Sequence of DPV Shallot latent virus
Garlic latent virus genomic RNA for RNA replicase, coat protein and other products, complete and partial cds.
ACC No: D11161
Dated: 2003-07-07 | Length: 3468 | CRC: 764224757
!!NA_SEQUENCE 1.0
ID GCVRRCP1 standard; RNA; VRL; 3468 BP.
XX
AC D11161;
XX
SV D11161.1
XX
DT 13-JUL-1992 (Rel. 32, Created)
DT 07-JUL-2003 (Rel. 76, Last updated, Version 18)
XX
DE Garlic latent virus genomic RNA for RNA replicase, coat protein and other
DE products, complete and partial cds.
XX
KW coat protein; RNA replicase.
XX
OS Garlic latent virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Carlavirus.
XX
RN [1]
RP 1-3468
RA Sumi S.;
RT ;
RL Submitted (19-MAY-1992) to the EMBL/GenBank/DDBJ databases.
RL Shin-ichiro Sumi, Wakunaga Pharmaceutical Co., Ltd, Institute for
RL Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL 739-11, Japan (E-mail:sumi_s@wakunaga.co.jp, Tel:0826-45-2331,
RL Fax:0826-45-4351)
XX
RN [2]
RP 1-3468
RA Sumi S.;
RT ;
RL Unpublished.
XX
RN [3]
RA Tsuneyoshi T., Sumi S.;
RT "Differentiation among garlic viruses in mixed infections based on RT-PCR
RT procedures and direct tissue blotting immunoassays";
RL Phytopathology 86:253-259(1996).
XX
DR GOA; O09491.
DR GOA; P87725.
DR GOA; Q67551.
DR GOA; Q67552.
DR SPTREMBL; O09491; O09491.
DR SPTREMBL; P87725; P87725.
DR SPTREMBL; Q67551; Q67551.
DR SPTREMBL; Q67552; Q67552.
DR SPTREMBL; Q67553; Q67553.
DR SPTREMBL; Q67554; Q67554.
XX
CC Sequence updated (13-Jan-1997) by: Shin-ichiro Sumi
XX
FH Key Location/Qualifiers
FH
FT source 1. .3468
FT /db_xref="taxon:12458"
FT /mol_type="genomic RNA"
FT /note="3' portion of GCV genome."
FT /organism="Garlic latent virus"
FT CDS <1. .941
FT /codon_start=3
FT /db_xref="GOA:Q67551"
FT /db_xref="SPTREMBL:Q67551"
FT /product="RNA replicase"
FT /protein_id="BAA01931.1"
FT /translation="ENHANRSCSDWLADVGLVFSKSQICTKWDNRFRSAKAAQTIVCFQ
FT HSVLIRFAPYMRYIEKKVHEVLPKQYYIHSGKGLDELNQWVCDNKFVGFCTESDYEAFD
FT ASQDQYIMAFEIALMEYLGLPRSLINDYKYIKTHLGCKMGALAIMRFSGEASTFLFNTL
FT ANMLFTFLRYDLNGKESICFAGDDMCANRKLRVSLRHEDFLGKLKLKAKVAFTRRPTFC
FT GWNLTFFGIYKKPQLVFERMCIAKETNNLQNCIDNYAIEISFAYVKGEMAVCHMDPEEL
FT DAFYNCVRVVVKSRHLLKSNVRELFKNEVET"
FT CDS 972. .1682
FT /codon_start=1
FT /db_xref="GOA:Q67552"
FT /db_xref="SPTREMBL:Q67552"
FT /product="ORF(II)"
FT /protein_id="BAA01932.1"
FT /translation="MDVFCKVLIECGFHRLECTGNKCKVVLGVPGCGKSSCIRKLINLD
FT SRFIAATFGAPDPLNVTGRRIHSVGELAKIDCTGKFLLLDEFQQGGFEELKPFALFGDV
FT CQFFDSDRPCPIADWCKTLSHRVNKPTCDFLREFGFEITSSKEGTLVFGGLYEEELLGV
FT VITYCSQVSNLLKAHQVDHFTLASCRGSEFPKVCLCLSDSIIQREDLAKFYVCATRSRG
FT DLLILTPDASKPTT"
FT CDS 1660. .1992
FT /codon_start=1
FT /db_xref="SPTREMBL:Q67553"
FT /product="ORF(III)"
FT /protein_id="BAA01933.1"
FT /translation="MPLSPPPDHTKTYFAGAIGVCVAICLYTLTRSTLPHVGDNIHSLP
FT HGGCYQDGTKRIIYNSPARNFPSSNLVSNLASPFCVLAIIIGLICLSEKFRPSSRTRIS
FT CNCNHS"
FT CDS 1971. .2165
FT /codon_start=1
FT /db_xref="SPTREMBL:Q67554"
FT /product="ORF(IV)"
FT /protein_id="BAA01934.1"
FT /translation="MQLQPFIVLVTSLLVTLLFCYSFDNLRTERCTVIITGESVKLIGC
FT EFTKDFIDFAKQAKPFGSL"
FT CDS 2190. .3083
FT /codon_start=1
FT /db_xref="GOA:P87725"
FT /db_xref="SPTREMBL:P87725"
FT /product="coat protein"
FT /protein_id="BAA01935.1"
FT /translation="MANEEEELSRMQNLPTRDPGTIPEQERSKAVNDVGVMDRENFEAV
FT LRRSEDRFNKLKEKCLSELSSVRVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL
FT VRNYAPESNNMATAEELAKISAKIQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDSKGFTENTKY
FT AAFDTFDAVTNKAAIQPLEGLIRAPTDSERIAFATHKKLALAKNSQNSRYSNTSAEVTG
FT GFFGCFPKHNFRENRC"
FT CDS 3044. .3373
FT /codon_start=1
FT /db_xref="GOA:O09491"
FT /db_xref="SPTREMBL:O09491"
FT /product="ORF(VI)"
FT /protein_id="BAA01936.1"
FT /translation="MFSKTQFQRESMLIKQRTYRRLLRAIFKLHTNKNCVDVIDIIVNK
FT IVCGRTGASKYARARRAKSIGRCPRCFRCAPGFYFTKNCDTKTCTPGISYNEKVKNFIV
FT DGVTM"
XX
SQ Sequence 3468 BP; 949 A; 699 C; 810 G; 1010 T; 0 other;
D11161 Length: 3468 July 15, 2003 09:04 Type: N Check: 2234 ..
1 tagagaatca cgcaaatcgg tcctgttcgg attggttagc tgacgtgggt
51 ctagtttttt cgaaaagtca gatttgcacg aagtgggaca atcgctttcg
101 gtctgcaaaa gcggcacaaa cgattgtttg ctttcagcac tcagtgctaa
151 taaggtttgc tccctacatg cgctatattg aaaagaaagt gcacgaagtt
201 ttgcccaaac agtattatat tcactctggc aaaggattgg atgagctgaa
251 tcaatgggta tgcgataata aatttgtcgg tttttgtact gagtcggatt
301 atgaagcttt cgatgcgtca caggatcaat acatcatggc tttcgagatc
351 gctctgatgg aataccttgg cctgcccaga tcattgatca atgattataa
401 gtatatcaag actcacttgg gttgtaagat gggagctctg gccattatga
451 gattttccgg cgaagctagt accttcttat tcaacacttt ggctaatatg
501 ctcttcacct ttttgcgata tgatttaaat ggaaaagaga gtatttgttt
551 tgcaggggat gacatgtgcg ccaatcggaa attgcgcgtc agcttaaggc
601 atgaggattt cttgggaaag cttaagttga aggcgaaggt tgcttttact
651 agaaggccca ctttttgtgg ttggaatttg actttctttg gaatatacaa
701 aaaacctcaa ttggtcttcg aaaggatgtg catagccaag gaaaccaaca
751 acctacagaa ttgcatcgac aactacgcca tcgagataag ttttgcttat
801 gtgaaaggcg agatggctgt ttgccacatg gaccctgaag agctcgatgc
851 gttctacaat tgtgtgcgtg tagtagtgaa aagcaggcat cttttaaaat
901 caaacgttcg tgagcttttc aagaacgaag ttgaaacttg agcttaggta
951 ttagctatac tatcgatata tatggatgtg ttttgtaaag ttttaattga
1001 gtgtggtttt catagattag aatgtactgg aaataagtgc aaagtcgtac
1051 ttggcgtgcc cggttgcggt aaaagtagtt gcattcgtaa attgattaat
1101 ttagattcgc gtttcattgc tgccaccttc ggtgccccag acccgctgaa
1151 cgttacggga cggaggattc actctgttgg cgaacttgct aagattgatt
1201 gcacggggaa atttctttta cttgacgaat ttcagcaggg tggtttcgag
1251 gaactcaaac cgtttgccct ctttggtgac gtgtgccaat ttttcgattc
1301 tgatagaccc tgccccattg ctgactggtg taaaacattg agccaccgcg
1351 ttaataaacc cacttgtgat ttcttaaggg aatttggttt tgagataact
1401 tccagtaagg agggtacttt ggttttcgga gggttgtacg aagaggagtt
1451 gctaggtgtc gtaattactt actgttctca agtgtcaaat ttgctcaaag
1501 ctcaccaggt cgaccacttc actctcgcaa gctgccgtgg ttccgagttc
1551 ccgaaagtgt gtctctgttt gagtgattcc attatacaga gggaagatct
1601 agcgaaattt tacgtttgtg ccacacgaag tcgtggggat ttgcttatcc
1651 taactccgga tgcctctaag cccaccacct gatcatacca aaacttattt
1701 tgccggagcc ataggggttt gtgtagctat ctgtttgtac actttgactc
1751 gctcaacttt gccgcacgtc ggggataaca ttcatagttt accgcacgga
1801 ggttgctatc aggacggcac caaaaggata atttacaata gccccgccag
1851 gaatttcccc agtagtaact tagtgtcaaa tcttgcttcg cccttctgtg
1901 tgcttgctat catcatcggt ctaatttgtt tgagtgagaa gtttaggcca
1951 agttcgagaa cacgcatctc atgcaattgc aaccattcat agttctcgtc
2001 actagtctcc tagttactct gctgttttgc tatagtttcg acaatttgag
2051 aaccgaaagg tgcaccgtca tcatcactgg tgagtccgtc aagctcattg
2101 gctgcgaatt cacaaaagat ttcatcgatt tcgcaaaaca agcgaaaccc
2151 tttggttcac tttaggttaa cagcgctcta attgatatta tggctaacga
2201 agaagaagaa ctcagtagaa tgcaaaacct gcctacccgc gatcccggaa
2251 ctatccccga gcaagaacgt agcaaggcag ttaatgatgt tggcgtgatg
2301 gatcgtgaga attttgaagc tgtgttgcgg agaagtgaag atagattcaa
2351 taagcttaag gagaaatgcc tgtcggaact atctagcgtg agagtgacca
2401 attgcgggtg ggagtcaggg agacccaaag cacaattagc cgatagtctt
2451 aagggggatg catccaacat tttcacacgc ccctcaatgg atgccttgct
2501 agtgaggaac tacgcgcctg agagcaacaa tatggctacc gccgaagagt
2551 tagcgaaaat ttctgctaaa atacaggctc tcggcgctcc tgaagaatgc
2601 ttggccgaag ttttctggga tatctgtatg tattgtacca ctgcaggcag
2651 ttcgccaaat gtgaatccca aaggtactat ctcagtcggg ggtaaagtcg
2701 tgactcgaga tatggttgtc gctgtgatca aggagtattc cacattacgt
2751 caagtctgtc gttgctacgc accagtggtc tggaattaca tgctattaaa
2801 tgaacaacca ccagctaatt gggattccaa aggatttact gagaacacta
2851 aatacgcggc tttcgatact tttgatgctg tcacgaacaa ggctgcaatc
2901 caaccactcg agggccttat tagagccccg actgactcgg aacgcatcgc
2951 ttttgcgacg cacaagaaat tagctctggc gaagaattcc cagaattcac
3001 gttattccaa cacttctgct gaagttaccg gtggcttctt cggatgtttt
3051 ccaaaacaca atttcagaga gaatcgatgt tgatcaagca aaggacttac
3101 cgtagactat tgcgtgctat atttaagttg catactaata agaactgtgt
3151 ggatgtgata gacatcatcg ttaataaaat agtgtgtgga agaactggag
3201 catctaaata tgctcgagct cgtagagcta agagtattgg taggtgcccc
3251 cgctgcttca ggtgtgctcc tggtttttat tttactaaaa actgtgatac
3301 taaaacttgt accccaggca ttagctataa tgaaaaagtc aagaacttta
3351 tagttgatgg tgtaacaatg tgaaacccta ctacagttct tggcttgttg
3401 cccataaaac ctaaataatg catcaacgtg ggaacatata aaataatttg
3451 tttttaaaat attttcgc