Sequence of DPV Zucchini yellow mosaic virus
Zucchini yellow mosaic virus gene for nuclear inclusion protein and coat protein.
ACC No: D13914
Dated: 2004-09-09 | Length: 1944 | CRC: -2130603020
!!NA_SEQUENCE 1.0
ID ZYMCP1 standard; genomic RNA; VRL; 1944 BP.
XX
AC D13914; D00593;
XX
SV D13914.1
XX
DT 17-DEC-1992 (Rel. 34, Created)
DT 09-SEP-2004 (Rel. 81, Last updated, Version 10)
XX
DE Zucchini yellow mosaic virus gene for nuclear inclusion protein and coat
DE protein.
XX
KW .
XX
OS Zucchini yellow mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1944
RA Jerry S.L.;
RT ;
RL Submitted (15-DEC-1992) to the EMBL/GenBank/DDBJ databases.
RL Slightom L Jerry, The Upjohn Company; Molecular Biology Unit
RL 7242,Kalamazoo,MI 49007, U.S.A. (Tel:616-385-5304, Fax:616-385-7373)
XX
RN [2]
RP 1-1944
RX MEDLINE; 90324931.
RX PUBMED; 2374006.
RA Quemada H., Sieu L.C., Siemieniak D.R., Gonsalves D., Slightom J.L.;
RT "Watermelon mosaic virus II and zucchini yellow mosaic virus: cloning of
RT 3'-terminal regions, nucleotide sequences, and phylogenetic comparisons";
RL J. Gen. Virol. 71:1451-1460(1990).
XX
CC In the longest ORF, there is a reading frame shift that probably
CC occurs between position 335 and 345. They suggests that it is most
CC likely an artifact of the recombinant DNA cloning procedure in (1).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1944
FT /db_xref="taxon:12232"
FT /mol_type="genomic RNA"
FT /note="512 bp upstream of BglII site."
FT /organism="Zucchini yellow mosaic virus"
FT /strain="Florida"
FT /clone="pZYMV-15"
FT misc_feature 335. .345
FT /evidence=NOT_EXPERIMENTAL
FT /note="reading frame shift region in translation"
FT CDS <346. .1733
FT /codon_start=3
FT /db_xref="GOA:Q89329"
FT /db_xref="UniProt/TrEMBL:Q89329"
FT /product="polyprotein precursor"
FT /protein_id="BAA03010.1"
FT /translation="WNCEEIENKLVFFANGDDLILAVKDEDSGLLDNMSSSFSELGLNY
FT DFSERTHKREDLWFMSHQAILVDGMYIPKLEKERIVSILEWDRSKEIMHRTEAICAAMI
FT EAWGHTELLQEIRKFYLWFVEKEEVRELAALGKAPYIAETALRKLYTDKGAETSELARY
FT LQALHQDIFFEQGDTVMLQSGTQPTVADARVTKKDKEDDKGENKDFTGSGSGEKTVVAA
FT KKDKDVNAGSHGKIVPRLSKITKKMSLPRVKGNVILDIDHLLEYKPDQIELYNTRASHQ
FT QFASWFNQVKTEYDLNDQQMGVVMNGFMVWCIENGTSPDINGVWFMMDGNEQVEYPLKP
FT IVENAKPTLRQIMHHFSDAAEAYIEMRNAEAPYMPRYGLLRNLRDRSLARYAFDFYEVN
FT SKTPERAREAVAQMKAAALSNVSSRLFGLDGNVATTSEDTERHTARDVNRNMHTLLGVN
FT TMQ"
FT mat_peptide <346. .893
FT /product="nuclear inclusion b"
FT mat_peptide 894. .1730
FT /product="coat protein"
FT polyA_site 1944
XX
SQ Sequence 1944 BP; 599 A; 359 C; 465 G; 521 T; 0 other;
D13914 Length: 1944 September 14, 2004 08:36 Type: N Check: 3383 ..
1 cggttgggca atgacaaaat tttatggtgg ctgggataaa ttgatgaaag
51 cattacctga tggttggtta tattgtcatg ctgatggatc acagtttgat
101 agttcattaa ccccagcctt attgaacgca gttcttataa tcaggtcatt
151 ttatatggag gattggtggg ttggccaaga gatgcttgaa aatctttatg
201 ctgaaattgt gtacactcca attcttgctc cggatggaac aattttcaag
251 aaatttagag gtaacaacag tgggcaaccc tcaacagtgg tggataacac
301 actaatggtt gtgatctcta tttactatgc gtgcatgaaa attcggttgg
351 aattgcgagg aaattgagaa taaacttgtc ttctttgcaa atggagatga
401 tctgatactt gcagtcaaag atgaggatag cggcttactt gataacatgt
451 catcctcttt ttccgaactt ggattaaatt atgatttttc agaacgtaca
501 cacaaaagag aagatctttg gttcatgtcc caccaagcaa tactagttga
551 tggaatgtac attccaaaac tcgagaaaga gagaattgtt tcaattctag
601 agtgggatag aagcaaagaa attatgcacc gaacagaggc gatttgcgct
651 gcaatgattg aggcatgggg gcacactgag cttttgcaag aaatcagaaa
701 gttttaccta tggttcgttg aaaaagaaga agtgcgagaa ttggctgccc
751 tcggaaaagc tccatacata gctgagacag cacttcgtaa gttatatact
801 gacaagggag cggagacaag tgaactggca cgatacctac aagccctcca
851 ccaagatatc ttctttgaac aaggagacac tgtaatgctc caatcaggca
901 ctcaaccaac tgtggcagac gctagagtta caaagaaaga taaagaagat
951 gacaaagggg aaaacaagga tttcacaggc tccggctcag gtgagaaaac
1001 agtagtagct gccaagaaag acaaggatgt gaatgctggt tctcatggga
1051 aaattgtgcc gcgtctttcg aagatcacaa agaaaatgtc attgccacgc
1101 gtgaaaggga atgtgatact cgatatcgat catttgctgg aatataagcc
1151 ggatcaaatt gagttataca acacacgagc gtctcatcag caatttgcct
1201 cttggttcaa ccaagttaag acagaatatg atctgaatga tcaacagatg
1251 ggagttgtga tgaacggttt catggtttgg tgtattgaaa atggcacctc
1301 acctgacatt aatggagtgt ggtttatgat ggacggaaat gaacaagttg
1351 agtatccttt gaaaccgata gttgaaaatg caaagccaac gctgcggcaa
1401 ataatgcatc atttttcaga tgcagcggag gcatatatag agatgagaaa
1451 tgcagaggca ccatacatgc cgaggtatgg tttgcttcga aacctacggg
1501 ataggagttt agcacgatac gctttcgatt tctatgaagt caattctaaa
1551 actcctgaaa gagcccgtga agctgttgcg cagatgaaag cagcagctct
1601 tagcaatgtt tcttcaaggt tgtttggcct tgatggaaat gttgccacca
1651 ctagcgaaga cactgaacgg cacactgcac gtgatgttaa tagaaacatg
1701 cacaccttac taggtgtgaa tacaatgcag taaagggtag gccgcctacc
1751 taggttatcg cttcgctgcc gacgtaattc taatatttac cgctttattt
1801 gatatcttta gatttccaga gtgggcctcc cacctttaaa gcgtagagtt
1851 tatgttagtt gtccaggagt gccgtagtcc tgtcggaagc tttagtgtga
1901 gcctctcacg aataagctcg agattagact ccgtttgcaa gcct