Sequence of DPV Shallot yellow stripe virus

Onion yellow dwarf virus gene for polyprotein (truncated RNA polymerase and coat protein), partial cds.

ACC No: D73378

Dated: 2003-07-07 | Length: 2032 | CRC: 834439143

                !!NA_SEQUENCE 1.0
ID   OYVCPTRP1  standard; RNA; VRL; 2032 BP.
XX
AC   D73378;
XX
SV   D73378.1
XX
DT   24-OCT-1995 (Rel. 45, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 12)
XX
DE   Onion yellow dwarf virus gene for polyprotein (truncated RNA polymerase and
DE   coat protein), partial cds.
XX
KW   coat protein; polyprotein precursor; RNA polymerase.
XX
OS   Onion yellow dwarf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-2032
RA   Sumi S.;
RT   ;
RL   Submitted (05-OCT-1995) to the EMBL/GenBank/DDBJ databases.
RL   Shin-ichiro Sumi, Wakunaga Pharmaceutical Co., Ltd, Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan (E-mail:sumi_s@wakunaga.co.jp, Tel:0826-45-2331,
RL   Fax:0826-45-4351)
XX
RN   [2]
RP   1-2032
RA   Tsuneyoshi T., Sumi S.;
RT   "Molecular cloning and characterization of onion yellow dwarf virus (OYDV)
RT   and garlic latent virus (GLV) isolated from Allium fistulosum L. var.
RT   Caespitosum Makino.";
RL   Unpublished.
XX
DR   GOA; P89885.
DR   SPTREMBL; P89885; P89885.
XX
CC   Sequence updated (13-Jan-1997) by: Shin-ichiro Sumi
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2032
FT                   /db_xref="taxon:43130"
FT                   /mol_type="genomic RNA"
FT                   /note="plant potyvirus isolated from Allium fistulosum L.
FT                   var. Caespitosum Makino"
FT                   /organism="Onion yellow dwarf virus"
FT                   /isolate="M15LAST"
FT   CDS             <1. .1838
FT                   /codon_start=3
FT                   /db_xref="GOA:P89885"
FT                   /db_xref="SPTREMBL:P89885"
FT                   /product="polyprotein precursor"
FT                   /protein_id="BAA11121.1"
FT                   /translation="IWNGSLKAEIRPIEKVQANKTRSFTAAPIETLLGGKVCVDDFNNN
FT                   FYRRNLAIPSTVGITKFYKGWNDLMRALPDGWVYCDADGSRFDSSLTPYLMNAVLNIRL
FT                   RFMEEWDIGQEMLKNLYTEIIYTPIATPDGSIIKKFKGNNSGQPSTVVDNTLMVMLSVQ
FT                   YTLLKNNVRFMEQDSIIRYFCNGDDLLIAIHPDYSHILDSFTKHFADLGLEYDFSNRTT
FT                   NREELYFMSHRGLLRDGVYIPKLDKERIVSILEWDRAKEPEHRLEAICAAMVEAWGYDE
FT                   LLHEIRLFYKWVLEQAPYNLIAQTGKAPYIAETALKRLYMDEQATESELEKYSRLYQIL
FT                   DEHIPTPSYVSYQASEIEDAANVNTDKQVGKSKDKDKDVDVGTSGEFSVPKVKMLSDKM
FT                   RLPRVGKKVILNGKHLLTYKPDQVDLYNTRATHAQFKTWYDAVKLEYELTDEQMKIVMN
FT                   GLMVWCIENGTSQNLTGVWTMMDGDNQMEYPLSPIIDNAKPTFRQIMAHFSDAAEAYIE
FT                   YRNATEKYMPRYGLQRNLREYSLARYAFDFYEMNSKTPIRAKEAHMQMKAAAVRGVANR
FT                   MFGLDGNISTDDENTERHTAADVNKDHHTLLGLRM"
FT   mat_peptide     <1. .1061
FT                   /product="RNA polymerase"
FT   mat_peptide     1062. .1835
FT                   /evidence=EXPERIMENTAL
FT                   /product="coat protein"
XX
SQ   Sequence 2032 BP; 681 A; 357 C; 458 G; 536 T; 0 other;

  D73378  Length: 2032  July 15, 2003 09:04  Type: N  Check: 5325  ..

       1  gaatttggaa tggttcactc aaagcagaga tacggccaat cgaaaaagtt
      51  caagcaaaca aaacacgctc atttacagca gcgccaatcg aaacactatt
     101  gggtgggaag gtttgtgttg acgatttcaa caacaacttt tatagaagaa
     151  atttagcaat tccttcaacc gtcgggataa caaaatttta caaagggtgg
     201  aatgatctca tgcgtgcact accagatgga tgggtttact gtgatgcgga
     251  tggttcgcga ttcgatagtt ccctaacacc ttatcttatg aacgcagttt
     301  taaacataag attacgtttc atggaagagt gggacattgg gcaggaaatg
     351  cttaagaatt tgtacactga gatcatctat acaccaattg cgacacctga
     401  tggttcaatt ataaagaaat ttaaaggaaa taatagtggg caaccttcta
     451  cggtggtgga taacacatta atggtaatgc tcagtgttca atatacgtta
     501  ttaaagaaca acgttagatt catggaacaa gattctatca tcagatattt
     551  ttgtaatggc gatgacttac ttatagctat tcacccagat tatagccaca
     601  tactagactc atttacaaaa cactttgctg atttgggtct tgaatacgac
     651  ttttcaaacc ggactacaaa tcgtgaggaa ttatacttca tgtcgcatag
     701  aggcttatta agagatggtg tctatatacc caaacttgac aaagaacgca
     751  tagtttctat acttgaatgg gatagagcca aagaaccaga acatcggctg
     801  gaggctattt gtgctgctat ggtcgaagca tggggatatg atgaattgtt
     851  gcacgagatc agattatttt ataagtgggt gttggagcaa gcaccatata
     901  acttaatagc ccaaactggg aaagcgccat atattgcaga aactgcactt
     951  aaaagattgt acatggatga acaagcaact gagagtgagt tagagaagta
    1001  tagtcgactt taccaaatcc tagatgagca cataccaaca ccgagttatg
    1051  tgtcatatca agcttcagaa atagaagatg ctgccaatgt gaacactgat
    1101  aagcaggttg gaaagagtaa ggataaggat aaggatgttg acgttggtac
    1151  atcgggcgag ttctcagtgc caaaagtgaa aatgttgtcg gataaaatgc
    1201  gtttgccacg agttgggaag aaggtaatac ttaatggcaa acatctttta
    1251  acttacaagc ccgatcaggt tgacttatac aatacacggg caacacacgc
    1301  acagtttaag acgtggtatg acgcagtgaa acttgaatat gaactgacgg
    1351  atgaacagat gaaaatagtc atgaatgggt taatggtgtg gtgcattgag
    1401  aatggaacat cacaaaattt aacgggagtt tggacaatga tggatggcga
    1451  caaccaaatg gaatatccgc tcagccctat tattgacaac gcaaaaccaa
    1501  cattcagaca aataatggca catttcagtg acgcagctga agcgtacatt
    1551  gaatatagga atgccacaga aaaatacatg ccccggtatg gacttcagcg
    1601  aaacttaaga gaatacagct tagcacgtta cgcattcgac ttttatgaga
    1651  tgaattcaaa gacgccgatc cgcgcgaagg aagctcatat gcagatgaaa
    1701  gcagcagcgg ttagaggggt agctaaccgt atgtttggct tggatggtaa
    1751  cataagcacc gatgatgaga acacagaacg acatacagca gctgatgtga
    1801  ataaggatca tcacacactg ctcggtcttc gtatgtaaca aacatatata
    1851  tatttatata tagtgtcatg cattatcttt cgttatattt gaatatgagc
    1901  aaacacagtg tggttacacc accgtttgtg gcatagtata tgatataact
    1951  tcgctagcat tatttgcacc atgcgactta gtgtggttac accacgagaa
    2001  gagtcaagtg ttgtacgttt tgttagggag ac