Sequence of DPV Barley mild mosaic virus
Barley mild mosaic virus genomic RNA1 for polyprotein precursor, complete cds.
ACC No: D83408
Dated: 2005-04-17 | Length: 7263 | CRC: -412209841
!!NA_SEQUENCE 1.0
ID BMD408 standard; genomic RNA; VRL; 7263 BP.
XX
AC D83408;
XX
SV D83408.1
XX
DT 22-MAR-1997 (Rel. 51, Created)
DT 17-APR-2005 (Rel. 83, Last updated, Version 7)
XX
DE Barley mild mosaic virus genomic RNA1 for polyprotein precursor, complete
DE cds.
XX
KW polyprotein precursor.
XX
OS Barley mild mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Bymovirus.
XX
RN [1]
RP 1-7263
RA Kashiwazaki S.;
RT ;
RL Submitted (06-FEB-1996) to the EMBL/GenBank/DDBJ databases.
RL Satoshi Kashiwazaki, National Agriculture Research Center, Department of
RL Plant Protection; 3-1-1 Kannondai, Tsukuba, Ibaraki 305-8666, Japan
RL (E-mail:skashiwa@narc.affrc.go.jp, Tel:81-298-38-8932, Fax:81-298-38-8929)
XX
RN [2]
RP 1-7263
RA Kashiwazaki S.;
RT "The complete nucleotide sequence and genome organization of barley mild
RT mosaic virus (Na1 strain)";
RL Unpublished.
XX
RN [3]
RP 1-7263
RX MEDLINE; 97128984.
RX PUBMED; 8973524.
RA Kashiwazaki S.;
RT "The complete nucleotide sequence and genome organization of barley mild
RT mosaic virus (Na1 strain)";
RL Arch. Virol. 141(11):2077-2089(1996).
XX
FH Key Location/Qualifiers
FH
FT source 1. .7263
FT /db_xref="taxon:12466"
FT /mol_type="genomic RNA"
FT /organism="Barley mild mosaic virus"
FT /clone="Na1SK2, Na1SK15, NH38"
FT /strain="Na1"
FT /segment="1"
FT 5'UTR 1. .148
FT CDS 149. .6925
FT /codon_start=1
FT /db_xref="GOA:P90245"
FT /db_xref="HSSP:1HEI"
FT /db_xref="InterPro:IPR001205"
FT /db_xref="InterPro:IPR001410"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="InterPro:IPR001650"
FT /db_xref="InterPro:IPR001730"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/Swiss-Prot:P90245"
FT /product="polyprotein precursor"
FT /protein_id="BAA18953.1"
FT /translation="MEEFIPEVFYQNQVQSLKKILKSWKRDTSIYAYLAREQEVLAFLV
FT LSPAHIAKLNKLLTEESARCALLAQNCETIEALAVVRQALQGVTLHFGDNGMEKGWLHM
FT MKALDACLDESFSENAAALKKSIQAVGHKLIAAKNRIESCERSVNHLTTFQFAREYGLS
FT TTYFEKLSNFGGHIRSFVWSSDSGEIFPKPKRSSRTKRISTFTSYYWGEFWCNCIWLLC
FT SLWSPARWCFNSVVFIWSLCGVLNLSMVVLQFTLKRHFGRYYFRYVMSGVLAICAVCCV
FT HLKNRKGPILQASQKDKRFIGILAFCITVIYMFDVDLADSLSNNLHKISRLVNLFLDDN
FT RGFATPALDNLTDFTTILQSGTSSDDLKIVQDTLAVVLQVDDEDATQDDAIYDSDGLQT
FT FKQWVSHNQLAGMQLARPLQYPCSTTYGLTADNVAELATSMAQEAKQWSQVVGHTGSGK
FT STRLPTAYANCLKGLAGRKKNVLVCEPTRAATVNVTSGISQNFGRLVYGRHEGWSNLGD
FT KTIQVMTYGSALAAWKVDNKFLSQFDAVFLDESHLITTHALVFESICQEVTNVRKFYVS
FT ATPRDGKKCPEAVRRYEIKTVKSECSSVDTFVRSQDKENSLYVLQHETVLVFLAGKAEC
FT DRAASNWNKLYSTNMYAYSLTGDNFTVAYENIVTRMLTDRIIVFCTNILETGVTLNVDC
FT VVDFGFTMRPELDLVDKSLTLMRRRVTENERAQRIGRAGRLRTGHAICIGNPETRHDLV
FT PPETLYEAALLSFVHGVQFYINEHFENAWIEGVTKSQASVMTQFKLSPFLMRDIVRDDG
FT AIPLSLHKILKNYTHRNTDLIGTKLSVMSHVYNSWPLYRTVHQSIFRGDSNVPQALKHA
FT RVPFNVSTAHDFPWENFAQACLEFQPRVLQVFSDSSSTSRIINLQIGKMHIVNSMEEVK
FT ININSYQRSAENLRSVKDSFESSIFRTKLLRGNPTGKITKRIETLLDNVRVLQQVHAKL
FT EIIAYSGGEKLNMDKKSVDELNEIVELQSKNSLTAEELARILHLTKPTSTFFNLFAERG
FT RQMLVTLLVMVAASLMYLVFWVSPRKQDDITIEGKGRAYNRDKRMGYDSYEEDEVRHKI
FT NKKFKERSTRFSNDSKPETSSKYRNLKQEFVNFYDLKTDANVLQAVFTAMDGAVLLQTE
FT APMADIDRVNRLLNDHFEDSESQAAHEGLNTMVKCHLTMKDGRQFELDMEQHDPETIAK
FT LGGEVGFRMNRYDLRQVGATRYINPKAQTSAATLEGMTMKPMSAFTIDSAKMVGFIKTA
FT KDTLNCILYGDWIIAPAHIQQGEGDITFIFQHTQFTTTTERLASYGIRQFKGLDLVVIR
FT RPQQIRAVKKDMRASILDTPTEVQMLYLSTKGGKYQVSTSAVCFPHYNNRWGHVISTAE
FT GMCGCIVFNPTTNHIVGIHVSYNDTRRRNEFQAFTSDVLTTINAPGHEIPFSPWVFDWK
FT FCGYTTKPRNMQSAPSTLERLNINATGFGFKLNAQGIKPAMLRSTETFSREFPNTQFKL
FT IGEVKKGLIDKHTITGENPYFLEFLNTFKPYQWVQAFMDEYAPSILAYDAYFKDLKKYD
FT RPPHASVFCEDTLTKAKHKMIKILEEAGMGRTLVRTTEQVLLDMAWTTSGGPLYHGKKI
FT DIVQHLSDDELVQFSEACQQALITGTLDGVWNGSLKAELRSSQKILERKTRVFTAAPIT
FT SLIAMKYYVDDFNKQFYKTHLKAPHTVGINKFNRGWQNLYEKLNKPGWTHGSGDGSRFD
FT SSIDGFLFDVIKDIRKHFMDAEHHKQLDTIYEEIVNTKICLANGLVIQKNCGNNSGQPS
FT TVVDNTLALMTSFLYAYARLTGDDTFELMDENFVFVCNGDDNKFAMSPSFMVKFGCDFS
FT PFLSELGLTYEFDEATEDICENPYMSLTMVRTSFGIGFSLSIERIVAILQWSRAGGVLH
FT AYLSGIAALFESFNTPKLFNLVHTYLLWLVTEHEEELFSMMELKDMFMPLPTKEQIALL
FT HYVGTEPIMEETYLQSGKDDPDPIVPPVSDTDLTNMAAAPPDNRRSRAVVPRGTSDWNL
FT PEPKMRMLGFKSKINIETLADVPEGYMNTFASVATETQRRKWEEATRGDFGITDNEKWE
FT KLLIAACIYFADNGTSPNFDEELTMEVNGGLNSIKEYPVRPFVVRAKKISTLRRIFRCY
FT SIETKLMFVKLRRVPQWAIKHGCLDEIVFDFMIPDQFTSRTALETLKQTKLAAIGVGTS
FT NSLLTSEQTNMRTTETRRRNDYDGHEALLR"
FT 3'UTR 6923. .7263
FT polyA_signal 7178. .7182
XX
SQ Sequence 7263 BP; 2097 A; 1941 C; 1564 G; 1661 T; 0 other;
D83408 Length: 7263 May 10, 2005 10:09 Type: N Check: 4295 ..
1 aaaaataaaa caaaactaca acccaataca aacaacgaac aacaatcaac
51 gaattcaaaa ctcatcaaag caacatcgct catcagtaac aattcaaacg
101 aactcaacaa caaaccaccc ttcgaccaaa cgaactctga ccatcaagat
151 ggaggagttc attcccgaag tgttctacca gaaccaggtt caaagtctca
201 agaaaattct taaatcctgg aaacgtgaca cttccattta cgcgtatctt
251 gctcgcgagc aagaggtcct agccttcctt gtactgagtc ctgcgcacat
301 tgccaaactg aacaaactac tcactgagga gtccgcacga tgcgctctgc
351 ttgcccaaaa ctgtgaaacc atcgaagctt tagccgttgt gcgacaagcc
401 ctgcaaggcg tcacgctgca ctttggtgac aatggtatgg aaaaaggctg
451 gttgcacatg atgaaagcac ttgacgcatg tcttgatgaa agctttagcg
501 agaacgccgc tgcgctcaag aaaagcatcc aggcggtcgg tcacaagctc
551 attgcggcaa aaaatcgcat cgaaagttgc gagcgatctg taaatcacct
601 tacaacgttt caatttgctc gcgaatatgg cttaagtacc acatacttcg
651 aaaaattgtc caatttcggt gggcatattc gaagttttgt gtggtccagc
701 gactcaggag aaattttccc aaaaccaaaa agatcatcac gtacgaagcg
751 catctcgaca ttcacgagct actactgggg tgagttttgg tgcaactgca
801 tctggctcct ctgttccctg tggtctcccg cacgctggtg ttttaattcc
851 gtagttttta tttggagtct ttgtggtgtt cttaatttat ctatggttgt
901 tttgcaattc accctcaagc gtcattttgg tagatactac ttccgctatg
951 tcatgtctgg tgttttagcc atttgtgccg tttgctgtgt gcatcttaaa
1001 aatcgaaaag ggcctatact tcaagcctcc caaaaagaca aacgtttcat
1051 aggaatatta gccttctgca tcactgtcat atacatgttt gatgtggatc
1101 tcgccgattc gcttagtaat aaccttcata aaatatcccg cctcgtgaac
1151 ctcttcctgg atgacaaccg cggattcgca acacctgctc ttgacaatct
1201 aacggacttc acaacaattc ttcaaagtgg aacatcgagt gacgacctaa
1251 agattgttca ggacacgcta gctgtggttt tacaagtcga cgatgaggac
1301 gcaactcaag atgacgcaat atacgattcc gacgggcttc agacttttaa
1351 gcagtgggtc tctcacaacc aactagccgg gatgcaactc gcacgcccac
1401 tgcaataccc ctgctccacc acctatggcc taactgcaga caatgttgcg
1451 gaactagcca ctagcatggc acaggaagcg aagcagtggt cacaagttgt
1501 tggacacact ggttccggaa agtccacacg actaccaact gcatacgcca
1551 actgtctcaa aggtttggct gggcgaaaga aaaacgtcct cgtttgcgaa
1601 cccactagag ctgcaaccgt taatgtcacc agcggtatct cgcaaaattt
1651 cggcaggctc gtctacggac ggcatgaggg ttggagcaac cttggtgaca
1701 aaacaataca ggtcatgaca tacggctccg cactcgcagc atggaaagtt
1751 gacaacaaat tcttaagcca gttcgacgca gtgtttctcg acgaatccca
1801 cctcataacc acgcacgccc ttgttttcga aagcatctgc caggaagtca
1851 caaacgtccg caagttctat gtgtcagcaa caccccgcga tgggaagaaa
1901 tgcccagaag ccgtgcgcag atatgaaatc aaaactgtga aatccgagtg
1951 cagtagcgtc gacactttcg ttcgaagcca agataaggaa aactcgctgt
2001 acgtcctcca acacgaaact gtacttgttt ttcttgctgg gaaagctgag
2051 tgcgatagag cagcaagcaa ctggaacaag ctgtactcaa ccaacatgta
2101 cgcatactcc ctaacaggtg acaacttcac agtggcatac gaaaacattg
2151 taacacgcat gctcaccgat cgcatcatcg ttttctgtac aaacattctg
2201 gaaactggcg tcaccctcaa cgtagactgc gttgttgact ttggattcac
2251 catgcgcccc gaacttgatc ttgttgacaa atcgctcacc ttaatgcggc
2301 gccgagtcac cgaaaacgag cgcgcacagc gaattgggcg tgcaggaagg
2351 ctcaggaccg gacacgcaat ttgcattgga aatcctgaaa cgcgccacga
2401 cctagtccca ccagaaactc tctacgaggc agctcttctc agcttcgtac
2451 atggcgtgca attctacatc aacgagcatt tcgaaaacgc ctggatcgag
2501 ggtgtaacaa agtcccaggc ctccgtaatg acgcagttca aactttctcc
2551 cttcctcatg cgtgacatcg tccgtgatga tggcgcaata ccactatcgc
2601 tccacaagat actcaagaat tacacacacc gcaacaccga tctgatagga
2651 acaaaactct ctgtcatgtc gcatgtctat aactcatggc ctctgtatcg
2701 gacagtgcat caatccatct tccgtggaga ttcaaatgtt ccacaagcgc
2751 tcaaacacgc acgcgtccct tttaacgtca gcaccgccca tgatttccca
2801 tgggaaaatt tcgcacaggc atgcctcgaa ttccagccac gtgttcttca
2851 ggtcttcagt gacagcagca gcacttcgcg cataatcaac ctgcaaatcg
2901 gtaagatgca catcgtcaat tccatggaag aagtcaagat aaacataaac
2951 agctatcaac gttctgcaga aaacctacgc tcagtcaagg acagctttga
3001 gagctccatc ttccgaacaa aactgctccg tggaaaccca actgggaaaa
3051 taactaagcg cattgaaact ctccttgaca acgtgcgagt gctgcaacag
3101 gtgcacgcga agctagagat catcgcatac tcaggtggag agaaacttaa
3151 catggacaag aaatcagtcg acgaacttaa tgagatcgtc gaactccaga
3201 gcaagaattc actcacagcc gaagagctag cacgcatact gcacctaaca
3251 aaacccacct ccactttctt caatctcttc gctgaacgtg gccgacaaat
3301 gctcgtaacc ctcctggtca tggttgccgc ctcgctcatg tacctcgttt
3351 tctgggtttc cccaaggaaa caggatgaca tcaccatcga gggcaaaggc
3401 agggcataca accgtgacaa gcgcatgggg tatgattcct acgaggagga
3451 cgaagttcgc cacaagatca acaagaagtt caaagaacgc agcacaagat
3501 tctccaatga ctccaagccg gaaacaagct caaagtaccg caacctgaag
3551 caagagtttg tgaatttcta tgatctcaaa accgatgcga atgtactaca
3601 agccgtgttc accgcaatgg atggagccgt tcttctgcaa actgaagctc
3651 caatggcaga cattgatcgt gtcaacagac tgctaaatga tcactttgaa
3701 gacagcgaaa gccaggctgc acacgaaggt ctcaacacca tggtcaagtg
3751 tcatttaacc atgaaagacg gaagacagtt tgaactcgac atggaacaac
3801 acgatcctga gactatcgcc aaacttggag gcgaagttgg tttcaggatg
3851 aacaggtatg atctacgcca agttggtgcc acacgataca tcaacccaaa
3901 agcacaaaca tccgcagcaa cgcttgaagg catgaccatg aaaccaatga
3951 gtgctttcac cattgacagc gcgaagatgg tcggttttat taaaactgca
4001 aaagacacac tcaactgcat tctatatggc gactggatca tagctcccgc
4051 acacatacag cagggcgaag gggacataac attcatcttc cagcacacac
4101 agtttacaac taccaccgag cgtttagcaa gctacgggat tcgacagttc
4151 aaaggccttg accttgttgt cattcgacgc ccccagcaga tacgcgcagt
4201 taagaaggac atgcgcgcca gcattcttga cacacccact gaagtgcaaa
4251 tgctctacct atcaaccaaa ggcggcaagt atcaagtgtc cacgtctgct
4301 gtgtgtttcc cacactataa caaccgatgg ggacacgtca tttcaacagc
4351 cgaaggcatg tgcggctgca ttgttttcaa ccccaccaca aaccacattg
4401 ttgggattca cgtctcctac aatgacacgc gcagaagaaa cgagtttcaa
4451 gcttttacaa gtgacgttct aacaacaatc aacgcaccag gacacgaaat
4501 acccttcagt ccatgggttt ttgactggaa gttttgcggg tacacaacga
4551 aaccacggaa catgcaaagt gcaccaagca cgcttgaacg actcaacatc
4601 aacgccacag gttttggttt caaactcaat gcacagggga tcaaacctgc
4651 catgcttcgc tccacagaaa cattctccag ggagttcccg aacacacagt
4701 tcaagctcat cggagaagtg aagaagggac tcattgataa acacacgatc
4751 acaggagaga acccctattt ccttgaattc ctcaacacat tcaaaccata
4801 ccaatgggta caagctttca tggacgagta cgcaccctcc atccttgcct
4851 acgacgcgta cttcaaggac ttgaagaagt acgataggcc gccacacgca
4901 agtgtgttct gtgaggacac attgaccaaa gccaaacaca aaatgattaa
4951 gattctcgaa gaggcaggta tgggcagaac cctagtacga accaccgagc
5001 aagtcttact tgacatggcc tggaccacct ctggtggacc cttgtaccat
5051 ggcaagaaga ttgacattgt acaacactta tctgatgatg agcttgtgca
5101 attcagtgaa gcctgccaac aggctctcat cactggaacg ctagatggag
5151 tctggaacgg atcactcaaa gccgagctcc gctcttcgca gaagatcctc
5201 gagcggaaaa ctcgtgtctt cactgctgcc cccataacaa gtctaattgc
5251 gatgaaatac tacgtggacg atttcaacaa acaattctac aagactcatc
5301 tcaaagcacc acatacagtt ggtatcaaca agtttaaccg cggatggcag
5351 aatctctatg agaagctcaa caaacctgga tggacgcatg ggagtgggga
5401 tggctccagg tttgatagct cgattgatgg attcctcttc gatgtcatca
5451 aagacatccg aaagcacttc atggatgcag aacaccacaa gcagcttgac
5501 acaatctatg aagaaattgt taacacgaag atatgtttag caaatggtct
5551 agtcatccaa aagaattgtg gaaacaatag cggacagccg agcactgtcg
5601 tcgacaacac actcgcactc atgacttctt ttctttatgc atacgcccga
5651 ctcactggag atgacacctt tgaactcatg gacgaaaact tcgttttcgt
5701 ctgcaacggc gacgacaaca agttcgccat gtcacccagc ttcatggtga
5751 agttcgggtg cgatttctcc ccattccttt ctgagctagg gctaacctac
5801 gagttcgacg aagccaccga agacatctgt gaaaacccct acatgtcctt
5851 gaccatggtt cgcacctcgt tcgggatcgg cttctctctc tccatcgaac
5901 gcatcgttgc aatcctgcaa tggagccgtg ctggtggagt cctgcatgcc
5951 tatctctctg gcattgctgc tcttttcgag tccttcaaca cacccaaact
6001 cttcaacctc gtgcacacat acctcctctg gctagtcacg gagcatgagg
6051 aggaactttt ttcgatgatg gaactcaagg atatgttcat gcctctgccc
6101 actaaggaac agatagcctt gttgcactac gtaggcactg aacccatcat
6151 ggaggaaaca tatctgcaat caggaaaaga tgatccagat cccattgttc
6201 ctccagtttc tgacactgat ctcacaaaca tggctgcagc accacccgac
6251 aacagaaggt cgcgcgccgt cgtcccccgt gggaccagtg actggaattt
6301 gcctgaaccc aagatgcgaa tgctaggttt caagtccaaa atcaacatag
6351 aaacgctcgc cgatgtcccc gaagggtata tgaatacctt tgcgtccgtt
6401 gcaactgaaa cgcaacgtag gaaatgggaa gaggccacgc gtggtgattt
6451 tggcatcacc gacaacgaga agtgggaaaa gctgctcatt gctgcctgca
6501 tatatttcgc agacaatggc acttcaccaa acttcgatga ggagctcact
6551 atggaagtca atggcggtct caactccatc aaagagtatc ccgtccgccc
6601 ttttgttgtc agggccaaaa agatctccac actgcgcagg atctttcgct
6651 gttactccat tgagacgaaa ctaatgttcg tgaagctgag gcgcgtacca
6701 caatgggcta taaagcacgg gtgccttgat gaaatcgtct tcgatttcat
6751 gatcccagac cagttcactt ccagaactgc actcgaaaca ctgaagcaga
6801 ccaagcttgc tgccattggt gttggcacaa gcaattctct cctcacctcc
6851 gaacagacga acatgagaac cactgaaacc cgaaggcgca acgactacga
6901 cggtcacgag gcgcttctcc ggtaggtatc tcacacagtt ccatttcctt
6951 ttcagcaatg catttaaaca cgcttccaat tacatcaagc gtcaagagtt
7001 gttcccgctt gcagttaatc cttatggggt ggcactttgt gttatgcaat
7051 ggacagttca atgacgcaat caaccatcat tggttggtga caacgcagca
7101 tgttctttct tttcacatca agcgacctgc acatcgcccg cttacagcta
7151 atcctacctg aggatggcac tctgtgttat gtaatggaat gtgcaatctc
7201 gcaaccaacc gtcattggtt gatggtgcgg ccaaaacccg cactcctgta
7251 taccggaaag gtt