Sequence of DPV Barley mild mosaic virus
Barley mild mosaic virus complete sequence of genomic RNA2, complete cds.
ACC No: D83409
Dated: 2003-07-07 | Length: 3516 | CRC: -405629190
!!NA_SEQUENCE 1.0
ID BMD409 standard; RNA; VRL; 3516 BP.
XX
AC D83409;
XX
SV D83409.1
XX
DT 22-MAR-1997 (Rel. 51, Created)
DT 07-JUL-2003 (Rel. 76, Last updated, Version 5)
XX
DE Barley mild mosaic virus complete sequence of genomic RNA2, complete cds.
XX
KW polyprotein precursor.
XX
OS Barley mild mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Bymovirus.
XX
RN [1]
RP 1-3516
RA Kashiwazaki S.;
RT ;
RL Submitted (06-FEB-1996) to the EMBL/GenBank/DDBJ databases.
RL Satoshi Kashiwazaki, National Agriculture Research Center, Department of
RL Plant Protection; 3-1-1 Kannondai, Tsukuba, Ibaraki 305-8666, Japan
RL (E-mail:skashiwa@narc.affrc.go.jp, Tel:81-298-38-8932, Fax:81-298-38-8929)
XX
RN [2]
RP 1-3516
RA Kashiwazaki S.;
RT "The complete nucleotide sequence and genome organization of barley mild
RT mosaic virus (Na1 strain)";
RL Unpublished.
XX
RN [3]
RP 1-3516
RA Kashiwazaki S.;
RT "The complete nucleotide sequence and genome organization of barley mild
RT mosaic virus (Na1 strain)";
RL Arch. Virol. 141:2077-2089(1996).
XX
DR GOA; P89684.
DR SWISS-PROT; P89684; POL2_BAMMN.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3516
FT /db_xref="taxon:12466"
FT /mol_type="genomic RNA"
FT /organism="Barley mild mosaic virus"
FT /clone="Na1SK5"
FT /strain="Na1"
FT /segment="2"
FT 5'UTR 1. .141
FT CDS 142. .2817
FT /codon_start=1
FT /db_xref="GOA:P89684"
FT /db_xref="SWISS-PROT:P89684"
FT /product="polyprotein precursor"
FT /protein_id="BAA18954.1"
FT /translation="MMMNSTIRQGWQQVLKRFSIPASGDRLIISNPTDQPIGLFGAFDT
FT SLQTLSQVGDDPEVLKQKIHIPTHLDIASALEASPRSFPWIFLTNSFCTFGGSIHAQNL
FT QAFATAEFKSGFCYMNLLVPLSFDIIDAHADSFRVFVEQLPDMLGAYPSLSMVLNVMLH
FT AATRFPEIVSSPVPTIAFDAESLQFHVTDKRGVPGMWNILKAGRVYELLSLAADGVGCE
FT YMLYPVGAAPQYSFWKKSMDHFTSDRFVEFLAMQNLLASALEQDYTTHDALDALLAALQ
FT NAGYTNVVARERRFPNGHDPSTVWLNLSEAPISEKLTDLKRYLLVGHRSDDTADITHNV
FT HQYVFEVLKTMSVQFSKRTNAYNRARFEVNHKVIWNAEYGRGPQQNAELEALVLFLNRQ
FT SLEIENILHRTTSPVVVTNWQPDVPTAAPEVSEGEPTHAVATPMTEAPAHATPVEVVNL
FT PSTRSYWAETLVGVLTAVLGTIFALLTRALIRAKRLRRKPTFPWVTLDSGDEDDDHSGG
FT GGGGPQTPGGQPPASPAHRTHQSRLSVQDIASDTSLLSVDLDEDTLSQYDETFQRIRRA
FT LFETSFTDILQNSARWISALEAMALADGNAPYTLLAQYLNGIEEAYTSFRNTGHVSRAT
FT LSSFFALEDSLRAAGIAFGATTPTQTIQNQFADSPARRWKTRFEQIACELGDASIKSLA
FT DLADIIDTERERSDLTQFDVLAASSISSLCRAVRIISDTTDPDAQLALVENATAMQNNI
FT NAILGTNVSIPFLSATRRLLVTRRIQQAGAENRSGATPETIQQLADAELIVSEANMFNE
FT MATSQRDIANATQEATIREHVLSPVNALANVGMAAAFFRSGGMRSRALHPAMPTMPGVS
FT AATGRPIFQAFRGRGHRLNR"
FT 3'UTR 2815. .3516
FT polyA_signal 3217. .3221
XX
SQ Sequence 3516 BP; 922 A; 1008 C; 781 G; 805 T; 0 other;
D83409 Length: 3516 July 15, 2003 09:22 Type: N Check: 7838 ..
1 aaaaataaaa caaaactaca acccaataca aacaacgaac aacaatcaaa
51 caaacaaaca cacaccaaac acacacagca aaccacagtt tacagctgcg
101 aaacgcgaac tcacacgctg caatctcaga attgaacaga gatgatgatg
151 aactccacga ttcgtcaagg atggcagcaa gtgctcaaac gcttttccat
201 cccagcatcc ggagataggc tcatcatttc caaccccact gatcaaccca
251 taggtctttt tggagcattc gacacatcgt tgcaaacact ctcgcaggtt
301 ggtgatgacc ccgaggtttt gaagcagaaa attcacatcc ccacgcacct
351 ggacatagca tccgcactcg aagccagccc ccggtccttt ccatggattt
401 tccttacaaa ctccttctgc acctttggtg gttccataca cgcccagaat
451 ctccaggcct tcgcaaccgc tgagttcaag agcgggttct gttacatgaa
501 cctgctggtg ccgctcagtt tcgacatcat tgatgcgcac gctgattcct
551 tccgtgtctt tgttgaacag ctccccgaca tgctaggtgc ctacccttcg
601 ctcagcatgg tgctaaacgt catgttgcac gcagccacgc gcttccccga
651 gattgtgagc tcccccgttc caaccatagc attcgacgcc gaatcactgc
701 agttccacgt gactgataaa cggggcgttc ctggcatgtg gaacatactc
751 aaagccggcc gcgtatacga gcttctctcg ctcgcagcgg atggcgtggg
801 ttgtgagtac atgctgtatc ccgttggcgc tgcaccccag tactccttct
851 ggaagaaatc catggaccat ttcacatctg accggttcgt tgaatttcta
901 gctatgcaga acctgcttgc tagtgcgctt gaacaggatt acacaacaca
951 tgacgcactt gatgcattac tagcagctct acagaacgca ggctacacaa
1001 atgttgtcgc aagggaaaga agattcccaa atggtcacga ccctagcact
1051 gtctggctaa acctaagtga ggcccccatt tcggagaagc taactgatct
1101 caaacgatac ctcttagttg gccacagaag cgacgacact gcagacataa
1151 cacacaacgt acaccagtac gtttttgagg ttcttaaaac catgtctgtt
1201 cagttcagca aaagaacgaa cgcttacaac cgcgcccgtt tcgaggtcaa
1251 ccataaggtg atttggaatg cagagtatgg acgcggtccc caacaaaacg
1301 ccgagcttga agcccttgtt ttgtttctta ataggcaatc gctggagatc
1351 gagaacattc tgcacaggac aaccagtccc gttgtcgtaa cgaactggca
1401 acctgatgtt cccactgcag cacctgaagt cagcgaggga gaacccacac
1451 acgcagtcgc aacacctatg actgaagcgc cagcacacgc aactcctgtt
1501 gaagttgtga atctgccatc aacacgctct tattgggccg aaacactcgt
1551 aggcgtgctg actgcagtcc taggaaccat cttcgcctta ctcacccgag
1601 cactcattcg tgcaaagagg ttgcgaagga agcccacctt cccttgggta
1651 acactggatt ccggagatga agatgacgac cattctggag ggggaggagg
1701 tggcccgcaa acacctggcg ggcagccccc agcctcaccg gcgcatagga
1751 cgcatcagtc acgcctctcc gtgcaagaca tagcatcgga caccagcctg
1801 ctgagtgtgg accttgacga agacacgctc tcccaatacg acgaaacctt
1851 ccaaaggatc cgtcgtgcgc tctttgaaac cagtttcaca gacattctgc
1901 aaaactctgc tcgctggatc tctgcgttag aagcaatggc attagcagat
1951 ggcaacgccc cttacacgct tctcgcgcaa tacctcaatg gtattgagga
2001 ggcgtacacg agcttccgta acacgggaca tgtttcgcgc gcaacactct
2051 caagcttctt cgctttggaa gacagcctac gtgcggctgg catagccttt
2101 ggagccacga caccaacgca aactatacag aaccagtttg ctgactcccc
2151 agcccggcgt tggaaaacac gcttcgaaca aatcgcatgc gaattgggcg
2201 acgctagcat taaatcgctt gccgatcttg cggacatcat cgacaccgag
2251 cgcgaaagaa gtgacctgac tcagtttgat gttcttgcag cctcttccat
2301 aagcagcctc tgtcgcgccg ttcgcatcat cagtgacaca actgatccag
2351 atgcgcaact ggccctcgtt gagaacgcga cagccatgca gaacaacatt
2401 aacgccatcc tggggacaaa tgttagcata cctttcctca gtgcaacacg
2451 tcgcctactc gtcacgcgac gcattcagca agccggcgca gaaaatcgtt
2501 ctggcgcaac acccgaaaca atacagcagc tggctgatgc tgaactaatt
2551 gtcagcgagg ctaacatgtt caacgagatg gccactagtc agagagatat
2601 cgccaatgct acacaagagg ccaccattcg tgagcatgtg ctcagtcctg
2651 tcaatgccct ggcaaatgtt ggcatggctg ctgctttctt ccggtctggc
2701 ggcatgcgct caagggctct ccaccccgca atgccaacaa tgcctggtgt
2751 ttctgctgcc acgggacggc caatattcca agcctttaga gggcgaggac
2801 atcgtctcaa tagatgatga aactctgtgc tcttgcacag cactgaacaa
2851 gcgacacacg cttgttgtga tagttaattt cacgcacagc gtgccactga
2901 acaagcgaca cacgcttgtt gtgataatta attaattttt gcgcagattc
2951 tatctgtgtt ttctagagtg tgctgctctg cagctgcatt ggagggtttc
3001 acgggaacga catcatcaca ccccatccac aaaccgcctg cattcacata
3051 ttgtgccact ttaaatactc atacgtatag gcaagtgcct ttctcgcaga
3101 gcatccctga gtgatggcta ttcacgcgat cgcaatcaac tgacttaatc
3151 ctcggttttg caatcaaata gtgagttcca cctccggatt tgttccccta
3201 gaactgcaat cctcgttatg ttgtcgctga ttactatcag ctcgtaaacc
3251 atgatatcca cccacaatta actactcgtg tactaacagt accggatacg
3301 cctatcctgc acttaaacct gcaggacgct atcagatccg cctactgtta
3351 ccatttgtgt agttcgttgt ggttccacct catatctaaa ttcagtacct
3401 gcatacaaaa cgtcatgcat ccctgttcaa catgaacgcg ggtttgggaa
3451 gaagcaagtc atcatagact gctggcattg ttaggttgac aatgtttatg
3501 tacacaggaa cgtgac