Sequence of DPV Japanese iris necrotic ring virus
Japanese iris necrotic ring virus genomic RNA, complete genome.
ACC No: D86123
Dated: 2005-04-17 | Length: 4014 | CRC: -896869219
!!NA_SEQUENCE 1.0
ID D86123 standard; genomic RNA; VRL; 4014 BP.
XX
AC D86123;
XX
SV D86123.1
XX
DT 17-MAR-2000 (Rel. 63, Created)
DT 17-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE Japanese iris necrotic ring virus genomic RNA, complete genome.
XX
KW capsid protein (p38); movement protein (p12); movement protein (p8);
KW readthrough protein (p85); readthrough protein (p99); replicase (p26).
XX
OS Japanese iris necrotic ring virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4014
RA Takemoto Y.;
RT ;
RL Submitted (20-JUN-1996) to the EMBL/GenBank/DDBJ databases.
RL Yutaka Takemoto, The University of Tokyo, Department of Agricultural and
RL Environmental Biology; 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113, Japan
RL (E-mail:aa57007@mail.ecc.u-tokyo.ac.jp, Tel:03-5841-5054, Fax:03-5841-5090)
XX
RN [2]
RX DOI; 10.1007/s007050050054.
RX MEDLINE; 20254547.
RX PUBMED; 10795530.
RA Takemoto Y., Kanehira T., Shinohara M., Yamashita S., Hibi T.;
RT "The nucleotide sequence and genome organization of Japanese iris necrotic
RT ring virus, a new species in the genus Carmovirus";
RL Arch. Virol. 145(3):651-657(2000).
XX
CC Sequence updated (26-May-1999)
XX
FH Key Location/Qualifiers
FH
FT source 1. .4014
FT /db_xref="taxon:77344"
FT /mol_type="genomic RNA"
FT /organism="Japanese iris necrotic ring virus"
FT /lab_host="Iris ensata"
FT CDS 32. .2698
FT /codon_start=1
FT /db_xref="GOA:Q9IRA2"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:Q9IRA2"
FT /note="ORF3"
FT /transl_except=(pos:764. .766,aa:OTHER)
FT /transl_except=(pos:2318. .2320,aa:OTHER)
FT /product="readthrough protein (p99)"
FT /protein_id="BAA92791.1"
FT /translation="MLWYEELTMSLLGSRFVPKPLAIVGGLSLCVTVAVRETVQDGISM
FT GLSSFGDYCRNKVQAGLNPLDVSHDFKQATPQHPSMDLMLDNPQLCEEPEDCLEVLVAN
FT EQVTKKRVNRHARGTFAAHAAMACKLHFGLVPMNTRANLSVATRFITNYCQERHVVPTH
FT TRAVVDAAIPLVFTPDSGEIGILVALNHRESQIRRLAAREATIQQTPLAELVTAPWCGA
FT SWVRVARVLSGYEDFTTFHFSNXGGLREMGGVETQIVRGAHPSLTVSREKPASKVRRIY
FT QITGLDSGINFGVHNNSLNNLRRGLIERVYYVESNGVLQPPLKPKVHQFRKLKYFARRL
FT VNIVGPYTPIEREEYPLLYQGRRKAIYQKALESLSERPCTRKDAKLRTFVKAEKINFTS
FT KGDPAPRVIQPRDPRYNIEVGKYLKKAEHHIYSAIDRIWGGPTVLKGYTVEQLGTNIAN
FT IWSQFQRPCAVGFDAKRFDQHVSVDALRFEHSVYNSIFHSPELARLLSYQLHNVGVAVA
FT SDGFARYSVDGCRMSGDINTALGNCLLSCAITHFLCRGIRCRLINNGDDCVLFFESSDL
FT TLVNERLTKWSDFGFSVKFEEPVYELERVEFCQMQPIYAGGWVMCRNPYICTSKDTYSI
FT TPWHNPKSALKWVASVGECGLSLCGGIPVLQSFYSCMMAQSDERMNIKNDVWFSDSGFA
FT RLASNGKRTREHVSTEARISFWKAFGILPETQVSLEGVFHSYENCKAFGAGGINCELWT
FT QLLKPQRMNXILQVKNYRLSSERYKMPGAVKRLRGLLRGMLRCLQFALWLVGKLLVGFG
FT CRSARPSPQPTIFTSEPLWDNDLLLVLIISLTFTLIYIFAQQQPVHHHHYSESNHKTQH
FT ITIGTESQTRQIPNGAT"
FT CDS 32. .2320
FT /codon_start=1
FT /db_xref="GOA:Q9IRA1"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:Q9IRA1"
FT /note="ORF2"
FT /note="putative replicase"
FT /transl_except=(pos:764. .766,aa:OTHER)
FT /product="readthrough protein (p85)"
FT /protein_id="BAA92792.1"
FT /translation="MLWYEELTMSLLGSRFVPKPLAIVGGLSLCVTVAVRETVQDGISM
FT GLSSFGDYCRNKVQAGLNPLDVSHDFKQATPQHPSMDLMLDNPQLCEEPEDCLEVLVAN
FT EQVTKKRVNRHARGTFAAHAAMACKLHFGLVPMNTRANLSVATRFITNYCQERHVVPTH
FT TRAVVDAAIPLVFTPDSGEIGILVALNHRESQIRRLAAREATIQQTPLAELVTAPWCGA
FT SWVRVARVLSGYEDFTTFHFSNXGGLREMGGVETQIVRGAHPSLTVSREKPASKVRRIY
FT QITGLDSGINFGVHNNSLNNLRRGLIERVYYVESNGVLQPPLKPKVHQFRKLKYFARRL
FT VNIVGPYTPIEREEYPLLYQGRRKAIYQKALESLSERPCTRKDAKLRTFVKAEKINFTS
FT KGDPAPRVIQPRDPRYNIEVGKYLKKAEHHIYSAIDRIWGGPTVLKGYTVEQLGTNIAN
FT IWSQFQRPCAVGFDAKRFDQHVSVDALRFEHSVYNSIFHSPELARLLSYQLHNVGVAVA
FT SDGFARYSVDGCRMSGDINTALGNCLLSCAITHFLCRGIRCRLINNGDDCVLFFESSDL
FT TLVNERLTKWSDFGFSVKFEEPVYELERVEFCQMQPIYAGGWVMCRNPYICTSKDTYSI
FT TPWHNPKSALKWVASVGECGLSLCGGIPVLQSFYSCMMAQSDERMNIKNDVWFSDSGFA
FT RLASNGKRTREHVSTEARISFWKAFGILPETQVSLEGVFHSYENCKAFGAGGINCELWT
FT QLLKPQRMN"
FT CDS 32. .766
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q9IRA0"
FT /note="ORF1"
FT /note="putative"
FT /product="replicase (p26)"
FT /protein_id="BAA92793.1"
FT /translation="MLWYEELTMSLLGSRFVPKPLAIVGGLSLCVTVAVRETVQDGISM
FT GLSSFGDYCRNKVQAGLNPLDVSHDFKQATPQHPSMDLMLDNPQLCEEPEDCLEVLVAN
FT EQVTKKRVNRHARGTFAAHAAMACKLHFGLVPMNTRANLSVATRFITNYCQERHVVPTH
FT TRAVVDAAIPLVFTPDSGEIGILVALNHRESQIRRLAAREATIQQTPLAELVTAPWCGA
FT SWVRVARVLSGYEDFTTFHFSN"
FT CDS 2284. .2514
FT /codon_start=1
FT /db_xref="GOA:Q9IR99"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProt/TrEMBL:Q9IR99"
FT /note="ORF4"
FT /note="putative"
FT /product="movement protein (p8)"
FT /protein_id="BAA92794.1"
FT /translation="MDSASETTTYELDPPGEELPTVKREIQNARGSQATKRAVARDAAL
FT STVRSVASREVVGGVWVQVGETFTTTNHFHF"
FT CDS 2366. .2698
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q9IR98"
FT /note="ORF5"
FT /note="putative"
FT /product="movement protein (p12)"
FT /protein_id="BAA92795.1"
FT /translation="MPGAVKRLRGLLRGMLRCLQFALWLVGKLLVGFGCRSARPSPQPT
FT IFTSEPLWDNDLLLVLIISLTFTLIYIFAQQQPVHHHHYSESNHKTQHITIGTESQTRQ
FT IPNGAT"
FT CDS 2685. .3743
FT /codon_start=1
FT /db_xref="GOA:Q9IR97"
FT /db_xref="HSSP:2TBV"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProt/TrEMBL:Q9IR97"
FT /note="ORF6"
FT /product="capsid protein (p38)"
FT /protein_id="BAA92796.1"
FT /translation="MALRDEKKVAKLASDGVAWAVKLRSGGGWKTLTTTQKRMARQALG
FT MTQVPIAQTGLRVNRVSQPISVSSRITTGEPRVTNVKRSMTVTFSEMIGVVRSHSSLST
FT ESWVLNPSDIATFPQLSVSAAMYEKYRFTNLAFRFAPSCPTTTGGVVVLVHDPDSSDDL
FT PSDPTMLYEYSGAMRTSAYSPARLIVPTDGAARFVGDNHTSDPKLINFGKLIVANYGQG
FT ASDPDMLGEIFIEYTVVLIDRQPSALSTQTLSAESSTGPKLLSRLVEGTKSPYTLTYSF
FT NCGGTFVVSLFYPIGPVSGPVSGSATIIRAYGDAQSQQAQVITVRSPCRGGDFTLGLNS
FT PGDIPTAFVTRA"
XX
SQ Sequence 4014 BP; 990 A; 1008 C; 1061 G; 955 T; 0 other;
D86123 Length: 4014 May 10, 2005 10:09 Type: N Check: 5550 ..
1 gggtaaacga gtatatatac aacgtgaacc catgttgtgg tacgaggagt
51 tgacgatgag tctactaggg tcgaggtttg tgcctaagcc tctggcgatc
101 gttggtgggc tgtctctctg tgtgactgtc gctgtgcggg aaactgtgca
151 agatggcatc tccatggggc tcagttcatt tggcgattac tgtaggaaca
201 aggtccaagc cggattaaac ccgctggacg tcagccacga cttcaagcaa
251 gcgacaccgc aacatcctag catggacctc atgctggaca atccccagtt
301 gtgcgaagaa ccggaggatt gccttgaggt cctggtggcg aacgagcaag
351 tgaccaagaa acgggtcaat cgccacgcta ggggaacatt cgccgcccac
401 gccgctatgg cctgtaaact gcacttcggg ttggttccaa tgaacacgcg
451 ggccaacctc agcgtagcaa ccaggttcat caccaactat tgccaggaga
501 ggcacgtcgt gccaacccac acgcgggcag tagtggatgc agccatccct
551 ctcgtattca cccctgactc tggtgagatc ggcattcttg tcgcattaaa
601 ccatcgcgag agtcagatca ggaggttggc agcgcgtgag gcaacaattc
651 agcaaacacc cctggctgaa ttggtaaccg ctccttggtg tggggcgagt
701 tgggtgaggg tggccagagt tctcagtggg tatgaggact ttaccacctt
751 ccatttctcc aactaggggg gtctccgcga gatggggggg gtagaaacac
801 agattgttcg aggcgcccac cccagtctca ccgtctcgcg ggaaaagcca
851 gcctccaagg ttcgcagaat ttaccaaatt actgggttgg atagtggcat
901 caattttggc gtgcacaaca atagtttgaa taacttgcgc cgaggtttaa
951 ttgagcgtgt ctactatgtc gaatccaatg gtgttttgca acctccgttg
1001 aagccaaagg tgcaccaatt ccgcaaactc aagtacttcg cccgtcgttt
1051 ggtaaacatt gttggaccgt ataccccgat cgagagggag gaataccctc
1101 tcttgtatca gggcaggcgt aaggcaatct accagaaggc gttagagtcc
1151 ctgagtgagc gaccatgcac aagaaaggac gccaaactcc ggacctttgt
1201 caaagccgag aagataaatt tcacctctaa gggtgaccca gcccccaggg
1251 taatccaacc cagggaccct cgatacaata tcgaggttgg gaagtaccta
1301 aagaaggctg aacatcacat atactccgct attgacagaa tatggggggg
1351 tcctactgta ctaaaggggt acacagtgga gcaactggga accaacattg
1401 ccaacatctg gtcccaattc cagagacctt gtgctgtagg ttttgatgcc
1451 aagagattcg atcagcacgt ctctgtagat gccctaagat ttgagcattc
1501 tgtttacaat tcgattttcc acagccctga gttggctaga ctacttagct
1551 accaactcca taacgtgggt gtggccgtgg cctctgatgg atttgccagg
1601 tattccgtgg atggatgtag aatgagcggt gacatcaaca cagcgttggg
1651 taattgcctg ctgagttgtg ccatcaccca cttcctgtgt aggggcataa
1701 ggtgtagact catcaacaac ggcgatgact gcgtcctctt cttcgaaagt
1751 tccgatttga ccctcgtcaa tgagcgtttg acgaaatggt ccgacttcgg
1801 gttttctgtc aagtttgagg aaccggtata cgagcttgaa cgtgttgagt
1851 tttgccaaat gcaaccaatt tacgcgggag gttgggtcat gtgccgtaac
1901 ccttacatat gcacttctaa ggacacctat agcatcacgc catggcacaa
1951 tcccaaaagc gcactcaaat gggtcgcttc agttggggag tgtggattat
2001 cactttgtgg gggcatacca gtgttgcaga gtttttacag ttgcatgatg
2051 gcgcagagtg atgagaggat gaatatcaaa aacgatgtgt ggttttcgga
2101 cagcgggttc gcaagattgg cctccaatgg caagcgcact agagagcatg
2151 tgagtaccga agccaggatt tccttctgga aagcttttgg tatccttcct
2201 gagacacagg tgtccctgga aggggtgttc cactcttatg aaaattgcaa
2251 agcatttggt gcggggggta taaactgcga actatggact cagcttctga
2301 aaccacaacg tatgaactag atcctccagg tgaagaatta ccgactgtca
2351 agcgagagat acaaaatgcc aggggcagtc aagcgactaa gagggctgtt
2401 gcgcgggatg ctgcgttgtc tacagttcgc tctgtggcta gtcgggaagt
2451 tgttggtggg gtttgggtgc aggtcggcga gaccttcacc acaaccaacc
2501 attttcactt ctgagcccct ctgggataac gaccttctcc ttgtgctaat
2551 aatctcactc accttcactc ttatatatat atttgctcaa caacaaccag
2601 tgcaccatca ccactactct gaaagcaatc ataagacaca gcacatcaca
2651 atcggcaccg aaagtcagac tcgacaaatt cccaatggcg ctacgtgatg
2701 aaaagaaagt tgcgaagcta gcctctgatg gagtagcctg ggctgtcaag
2751 ctcagatctg gtgggggttg gaaaaccctc accactaccc aaaagaggat
2801 ggctagacaa gcgctgggaa tgactcaagt gcccatagcc caaactgggt
2851 tgcgggtaaa tcgtgtgtcc cagccaatct ctgtgtcctc taggatcacg
2901 actggtgaac cccgtgtaac caacgttaaa cgcagtatga ctgtcacttt
2951 ttccgagatg attggtgtag taaggtcaca ctccagcttg tccacggagt
3001 cttgggtcct caacccaagt gacattgcta cgttccctca attatccgtt
3051 tctgctgcga tgtacgagaa gtacaggttc accaatctag ccttcagatt
3101 tgctccaagt tgccctacga ccacaggtgg agtagtagta ttagtccacg
3151 accctgattc gagcgacgac ctccctagcg accctaccat gttatatgag
3201 tattcaggag ctatgcgaac cagtgcttac agcccagctc gcctcattgt
3251 tccaactgac ggcgcagcca ggtttgtcgg cgacaatcac acaagtgacc
3301 cgaagctgat caacttcggg aagctcattg ttgccaatta tggacaagga
3351 gcatctgatc ctgatatgtt gggggagatc tttatcgagt atactgttgt
3401 gcttattgat cggcagccat ctgcattgag tacacagaca ttatcggctg
3451 aatcatcgac aggacctaag ctactctccc ggttggtcga gggaaccaag
3501 agcccctaca cccttacgta cagcttcaac tgtggtggta cctttgttgt
3551 cagtttgttc taccccatcg gaccagtttc cggaccagta tccgggtcag
3601 ctactattat ccgagcctat ggggacgcac agagccaaca ggcacaagtt
3651 atcaccgtta ggtcaccatg cagaggcgga gacttcaccc ttggactgaa
3701 tagtccaggt gacataccca ccgcctttgt cacccgtgct tagaaacgac
3751 cattcttggg tttgcagcga gatgccacgt gccagaggat agtaccactg
3801 gctgacccta ccagcgtttg cgagttggta tgcgtggatg taaattccaa
3851 gtcttgtgtc cgacctaggc tccgccggct ggagctcgca tgtggcagtg
3901 cgagcagagg atgtcccgat gcataaaatc ccgtgagggt gggcttgcta
3951 gggaggccga cactgcgtaa tgcaaaacta cccttttccc ctgtgagggg
4001 gaagaggggg gccc