Sequence of DPV Soil-borne wheat mosaic virus
Soil-borne wheat mosaic virus genomic RNA (RNA 2) for readthrough protein, capsid protein and cystein-rich protein, complete cds.
ACC No: D86320
Dated: 2006-12-05 | Length: 2426 | CRC: -452953250
ID D86320; SV 1; linear; genomic RNA; STD; VRL; 2426 BP.
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AC D86320;
XX
DT 26-JUL-1996 (Rel. 48, Created)
DT 05-DEC-2006 (Rel. 90, Last updated, Version 6)
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DE Soil-borne wheat mosaic virus genomic RNA (RNA 2) for readthrough protein,
DE capsid protein and cystein-rich protein, complete cds.
XX
KW .
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OS Soil-borne wheat mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Furovirus.
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RN [1]
RP 1-2426
RA Shirako Y.;
RT ;
RL Submitted (28-JUN-1996) to the EMBL/GenBank/DDBJ databases.
RL Yukio Shirako, University of Tokyo, Asian Center for Environmental
RL Sciences; 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113, Japan
RL (E-mail:shirako@ims.u-tokyo.ac.jp, Tel:81-3-3812-2111, Fax:81-3-5800-5192)
XX
RN [2]
RA Shirako Y.;
RT "Non-AUG translation initiation in a plant RNA virus: a forty-amino-acid
RT extension is added to the N terminus of the soil-borne wheat mosaic virus
RT capsid protein";
RL J. Virol. 72:1677-1682(1998).
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FH Key Location/Qualifiers
FH
FT source 1. .2426
FT /organism="Soil-borne wheat mosaic virus"
FT /segment="2"
FT /strain="Nebraska"
FT /isolate="US Lab1"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:28375"
FT CDS 333. .1364
FT /codon_start=1
FT /transl_except=(pos:861. .863,aa:OTHER)
FT /product="39-kDa readthrough protein"
FT /note="opal suppression"
FT /db_xref="GOA:Q88464"
FT /db_xref="InterPro:IPR001337"
FT /db_xref="UniProtKB/TrEMBL:Q88464"
FT /protein_id="BAA13064.1"
FT /translation="MAVNKSYTGYNKELNAMAATHAYIRLSTLMSQIESWQATRASVLT
FT HLGVMLNGVSKLGERSFFSRTKRFGAHTSDGDEIFCDLGGEAVTQILSRLTVALQSARG
FT EGAQTRKAKRGAAPGTSQVENEEQGQTDQTLAISNAVAELMIFVRTKDFTMNECYTQDS
FT FEAKYNLKWEGSSXLIIRNEPEVVYSELEDKLLSFESSVYHPKAVTVEFEVPVATGTTT
FT TDDEIITEDVEMVIVTEVLVDDESDYYWLYFVLLLTSFLITCFILLSRRFIHFLGNRGG
FT PGAPLCRRFATRLWSIRLWLLRKATRRYGNLGVVRKTHSQTTMRKYLRDYNFQLEEWET
FT AIA"
FT CDS 333. .863
FT /codon_start=1
FT /product="19-kDa capsid protein"
FT /db_xref="GOA:Q88463"
FT /db_xref="InterPro:IPR001337"
FT /db_xref="UniProtKB/TrEMBL:Q88463"
FT /protein_id="BAA13065.1"
FT /translation="MAVNKSYTGYNKELNAMAATHAYIRLSTLMSQIESWQATRASVLT
FT HLGVMLNGVSKLGERSFFSRTKRFGAHTSDGDEIFCDLGGEAVTQILSRLTVALQSARG
FT EGAQTRKAKRGAAPGTSQVENEEQGQTDQTLAISNAVAELMIFVRTKDFTMNECYTQDS
FT FEAKYNLKWEGSS"
FT CDS 1498. .2022
FT /codon_start=1
FT /product="19-kDa cystein-rich protein"
FT /db_xref="InterPro:IPR007609"
FT /db_xref="UniProtKB/TrEMBL:Q88465"
FT /protein_id="BAA13066.1"
FT /translation="MSTVGFHTCASCVDGPKSIKCVSKYRISVYKTLGLDVVKCRLPAD
FT CGVNCGMPAAFVLEQGHPKLTMDGYCGEKHRGYVLSGAWRHAQLRSLNAELDTLEAREE
FT SLRAQIKALSAGDHCPAVLAYVPKKLTKLKAEVYDVTGKKQVCITGLVDVMDSALVRLA
FT PDSPPKKISSL"
XX
SQ Sequence 2426 BP; 635 A; 469 C; 594 G; 728 T; 0 other;
d86320 Length: 2426 05-DEC-2006 Type: N Check: 7631 ..
1 gtatttcttc ttcacatacg acaagtgtta acttgttccg tgagatttta
51 ccattcttcc ctgagtgaga attaaaataa actttggatt gctacttgga
101 tgaaacttgg agtttcactt gtctctcgtt accataggca cgcttaacgc
151 gataaatcct aggtaatcag cggggaggaa actagtcgtc tctttcaagt
201 ggtatcggtg cgctggataa gtttgctaga ctcaaagacc aggtggacct
251 gtcgctgcag aaagcagctg gtaaagtgac tgctgaatct accggaccat
301 tattgccaaa ggttactaca ccattgccag ttatggcggt aaataaaagt
351 tacactggtt acaacaaaga gcttaacgcg atggctgcga ctcacgctta
401 cataagactc agcactttga tgagtcagat tgaaagttgg caggctacga
451 gggcgagtgt acttacgcat ttaggtgtta tgcttaatgg cgtgagtaaa
501 ttaggtgaac gaagtttctt ctctaggact aaacgctttg gagcgcatac
551 ttcagacggt gacgagattt tctgcgatct aggaggagaa gcggttacgc
601 aaatcctttc taggttgaca gttgctcttc aatccgctag aggtgaaggt
651 gctcagacga ggaaggctaa gaggggagct gcacctggca ctagtcaagt
701 agagaatgaa gaacagggtc agaccgatca gactcttgct atttctaatg
751 cagttgctga gttaatgatc tttgtgcgta cgaaagattt tactatgaat
801 gaatgctata ctcaagactc ttttgaggct aagtataact tgaaatggga
851 aggttcgagt tgacttatca ttcgtaacga accagaggta gtctattcgg
901 agctagaaga taagttactg agcttcgaaa gttctgtcta tcatcccaaa
951 gcggttactg tcgagtttga agttcctgtt gctacaggga ctacgactac
1001 tgatgatgag atcattactg aagatgtgga gatggtaata gtcactgagg
1051 tgctcgtcga cgacgaatct gattactatt ggctgtactt cgtactgctg
1101 ctcacatctt ttctcataac gtgtttcatt ctcctttcga ggagattcat
1151 tcatttcctt ggcaaccgag ggggtcctgg tgcaccattg tgtagacgct
1201 ttgctacaag actttggtcc attaggttgt ggttgttaag gaaagcgacc
1251 aggcgctatg gcaatttagg cgtcgtgcga aagactcact ctcaaaccac
1301 aatgcgtaaa tatttgaggg attacaactt tcaacttgaa gagtgggaaa
1351 cagctattgc ctagggtgag tggtaaaagt ggtgttggta gtatgaagat
1401 gaaaatcgct agtaagccta tggcgtccta acgtgttgtt tttaatacta
1451 cttcaccaat cacacactac tttctgggct acttgtttat ctccattatg
1501 tctactgttg gtttccacac ttgtgcgagt tgcgttgatg gacctaagtc
1551 tattaaatgt gttagtaagt atcgtattag cgtgtacaag actcttggtc
1601 ttgatgttgt taagtgtcgt cttcctgcag attgtggcgt taattgtggt
1651 atgcctgcgg cttttgtttt agaacagggt catcctaagc ttactatgga
1701 cggttactgt ggagagaaac acagaggtta tgttctatct ggtgcgtggc
1751 gtcatgccca actccgctct ctcaatgctg aattagatac cttggaggct
1801 agagaagagt ctcttcgagc tcagattaaa gctctcagcg ctggcgatca
1851 ttgtcccgct gttctcgcat acgtccccaa gaaactgact aagttgaaag
1901 cggaggttta cgatgttact ggaaagaagc aggtgtgcat tacgggttta
1951 gttgatgtaa tggattctgc gttggtgcgt ttggcacctg actcaccgcc
2001 aaagaagata tcctctttgt gatgttctat gttctcgtct tgttgttttc
2051 ttattgctag tttgtgtcta ctggagtagg taaccaggat aaagaacccg
2101 aacgaaaatc ttgcaaaaat atttattact aatataaata aatgggcaag
2151 tctgtcactt tggctatcag agttatcata ctctataaac tatgacgtgg
2201 tcttcacgat agaagatggt gcttgttatt tcacctaaat cgaaataacg
2251 aaagggcgtt ctacagtacg tttaaactgt aggttccaac ctctagttcc
2301 tattgatgta atcgaaaaaa gatcaatggg taattatgat gaggtgcgac
2351 tggtggtcgc ggctgctatc acacagcagc taggaggggt tcaattcccc
2401 ccccatccgg agggttatcc ggccca