Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for virus coat protein, partial cds.

ACC No: D88614

Dated: 2008-12-14 | Length: 1223 | CRC: 839496024

                
ID   D88614; SV 1; linear; genomic RNA; STD; VRL; 1223 BP.
XX
AC   D88614;
XX
DT   25-DEC-1996 (Rel. 50, Created)
DT   14-DEC-2008 (Rel. 98, Last updated, Version 6)
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DE   Turnip mosaic virus gene for virus coat protein, partial cds.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1223
RA   Sano Y.;
RT   ;
RL   Submitted (26-OCT-1996) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Yoshitaka Sano Kyoto Institute of Technology, Faculty of Textile,
RL   Department of Applied Biology; Matsugasaki, Sakyo-ku, Kyoto, Kyoto 606,
RL   Japan
XX
RN   [2]
RX   DOI; 10.1007/BF01309697.
RX   PUBMED; 1524495.
RA   Sano Y., van der Vlugt R., de Haan P., Takahashi A., Kawakami M.,
RA   Goldbach R., Kojima M.;
RT   "On the variability of the 3' terminal sequence of the turnip mosaic virus
RT   genome";
RL   Arch. Virol. 126(1-4):231-238(1992).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1223
FT                   /organism="Turnip mosaic virus"
FT                   /host="Brassica rapa"
FT                   /isolate="JAP"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <148. .1014
FT                   /codon_start=1
FT                   /product="virus coat protein"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="BAA13652.1"
FT                   /translation="AGETLDTGLTEEQKQAEKERKERERSEKERERQRQLALKKGKNAA
FT                   QEEGERDNEVNAGTSGTFSVPRLKSLTSKMRVPKYEKRVALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVKGL"
FT   polyA_site      1223
FT                   /note="10 A nucleotides"
XX
SQ   Sequence 1223 BP; 388 A; 237 C; 310 G; 288 T; 0 other;

d88614 Length: 1223  14-DEC-2008  Type: N  Check: 9886  ..

       1  caagagggaa aagctcctta catagcggaa acggcattaa ggaaacttta
      51  ccttgacaaa gaaccagctc aagaagatct tacccaatac ttacaagcaa
     101  tcttcgaaga ttacgaagat ggtgctgaag tgtgtgttta tcaccaggca
     151  ggtgagacgc ttgataccgg tctaacagaa gagcagaagc aggctgaaaa
     201  ggagagaaag gagagggaga gatcagagaa agagcgagaa aggcaaagac
     251  agctagcgct taagaaaggc aaaaacgcag cacaagaaga gggcgaacgt
     301  gacaatgaag taaacgccgg aacttccgga acttttagcg tgcctagact
     351  caaaagtctt acaagcaaaa tgcgtgtgcc gaagtatgag aaaagagttg
     401  ctctcaacct cgatcatttg atcttataca cgccggagca gacagattta
     451  tccaacacgc gttcaacgcg gaagcagttt gacacttggt ttgaaggtgt
     501  catggctgac tatgagctaa cggaggataa aatgcaaata attctcaatg
     551  gtttaatggt ctggtgcatt gagaatggaa cctccccgaa cataaacgga
     601  atgtgggtga tgatggacgg agatgatcag gtggaattcc cgatcaagcc
     651  gctcattgac cacgccaaac ccacatttag gcaaataatg gcccatttca
     701  gtgacgtagc tgaagcgtac attgaaaagc gtaaccagga ccgaccgtac
     751  atgccacgat atggtcttca gcgcaattta accgacatga gcttagctcg
     801  ttacgcgttt gatttctacg aaatgacttc tagaactcca atacgtgcga
     851  gagaggcaca catccagatg aaagcagcag cactgcgtgg cgcaaataat
     901  aatttgttcg gcttggatgg taacgtcggc acaacggtag agaacacgga
     951  aaggcatacg accgaagacg ttaatcggaa catgcataac ttacttggcg
    1001  ttaaggggtt atgaagttgt atgctagtag actataagta gttaagttta
    1051  ctcgttagta ttctcgctta tgggaaatat gtaagtttgt taaagcagcc
    1101  agtgtgactt cgtcatgtgt gttgttgtta ctttctatat tttcgccgaa
    1151  ctttttattg gtgttagcgc atgtggtgag atactatctc gattgcctta
    1201  acatttgata ggaagcaagg gac