Sequence of DPV Rotavirus A
Human rotavirus VP4 gene, complete cds.
ACC No: D90260
Dated: 2003-07-07 | Length: 2359 | CRC: 948854366
!!NA_SEQUENCE 1.0
ID ROHK8 standard; genomic RNA; VRL; 2359 BP.
XX
AC D90260; M28349;
XX
SV D90260.1
XX
DT 04-SEP-1992 (Rel. 33, Created)
DT 07-JUL-2003 (Rel. 76, Last updated, Version 11)
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DE Human rotavirus VP4 gene, complete cds.
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KW capsid protein; VP4.
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OS Human rotavirus II type 1
OC Viruses; dsRNA viruses; Reoviridae; Rotavirus; Rotavirus A;
OC Human rotavirus A; Human rotavirus 2.
XX
RN [1]
RX MEDLINE; 89342660.
RX PUBMED; 2474677.
RA Taniguchi K., Nishikawa K., Urasawa T., Urasawa S., Midthun K.,
RA Kapikian A.Z., Gorziglia M.;
RT "Complete nucleotide sequence of the gene encoding VP4 of a human rotavirus
RT (strain K8) which has unique VP4 neutralization epitopes";
RL J. Virol. 63(9):4101-4106(1989).
XX
RN [2]
RP 1-2359
RA Taniguchi K.;
RT ;
RL Unpublished.
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RN [3]
RX MEDLINE; 94246741.
RX PUBMED; 7514681.
RA Zhou Y., Burns J., Morita Y., Tanaka T., Estes M.;
RT "Localization of rotavirus VP4 neutralization epitopes involved in
RT antibody-induced conformational changes of virus structure";
RL J. Virol. 68(6):3955-3964(1994).
XX
RN [4]
RX MEDLINE; 94233703.
RX PUBMED; 8178429.
RA Taniguchi K., Urasawa T., Urasawa S.;
RT "Species specificity and interspecies relatedness in VP4 genotypes
RT demonstrated by VP4 sequence analysis of equine, feline, and canine
RT rotavirus strains";
RL Virology 200(2):390-400(1994).
XX
RN [5]
RX MEDLINE; 94303190.
RX PUBMED; 8030238.
RA Burke B., Bridger J.C., Desselberger U.;
RT "Temporal correlation between a single amino acid change in the VP4 of a
RT porcine rotavirus and a marked change in pathogenicity";
RL Virology 202(2):754-759(1994).
XX
RN [6]
RX MEDLINE; 94330134.
RX PUBMED; 8053149.
RA Dunn S., Burns J., Cross T., Vo P., Ward R., Bremont M., Greenberg H.;
RT "Comparison of VP4 and VP7 of five murine rotavirus strains";
RL Virology 203(2):250-259(1994).
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DR GOA; Q01641.
DR SWISS-PROT; Q01641; VP4_ROTHJ.
XX
CC These data kindly submitted in computer readable form by:
CC Koki Taniguchi
CC Department of Hygiene
CC Sapporo Medical College
CC South 1, West 17
CC Sapporo 060
CC Japan
CC Phone: 011-611-2111 x2351
CC Fax: 011-612-1660
CC email: mise@sapmed.ac.jp
CC The 3'-terminal 200 nt of the viral RNA were determined by using
CC denatured double stranded virion RNA.
CC virion RNA
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FH Key Location/Qualifiers
FH
FT source 1. .2359
FT /db_xref="taxon:36432"
FT /mol_type="genomic RNA"
FT /organism="Human rotavirus II type 1"
FT /strain="K8"
FT CDS 10. .2337
FT /codon_start=1
FT /db_xref="GOA:Q01641"
FT /db_xref="SWISS-PROT:Q01641"
FT /product="VP4"
FT /protein_id="BAA14307.1"
FT /translation="MASLIYRQLLSNSYVTNISDEVNEIGTKKTTNVTVNPGPFAQTGY
FT APVDWGHGELPDSTLVQPTLDGPYQPTSLNLPVDYWMLIAPTREGKVAEGTNTTDRWFA
FT CVLVEPNVQNTQRQYVLDGQNVQLHVSNDSSTSWKFILFIKLTPYGTYTQYSTLSTPHK
FT LCAWMKRDNRVYWYQGATPNASESYYLTINNDNSNVSSDAEFYLIPQSQTAMCTQYINN
FT GLPPIQNTRNIVPVNITSRQIKDVRAQMNEDIVISKTSLWKEMQYNRDIIIRFKFANSI
FT IKSGGLGYKWSEISFKPMNYQYTYTRDEEEVTAHTTCSVNGVNDFNYNGGTLPTDFAIS
FT RFEVIKENSYVYVDYWDDSQAFRNMVYVRSLAANLNDVVCSGGSYSFALPVGNHPVMSG
FT GAVTLTSAGVTLSTQYTDYVSLNSLQFRFRLAVSEPSFSISRTRMSGIYGLPAVNPNNS
FT AEYYEIAGRFSLISLVPTNDDYQTPIANSVTVRQDLERQLGELREEFNSLSQEIAVSQL
FT IDLATLPLDMFSMFSGIKSTVEAVKSMTTNVMKRFKTSSLANAISDLTSNMSEAASSVR
FT LTSVRSVGTITLPRARVSLQVGDDLRSMQDVSTQVSNVSRNLRLKEFTTQTDTLSFDDI
FT SAAVLKTKLDKSTQISQQTMPDIIAESSEKFIPKRSYRIVDEDIRFETGIDGTFYAYKV
FT DTFNEIPFDMERFNKLITDSPVLSAIIDFKTLKNLNDNYGITKKQAMELLHSNPKTLKE
FT FINNNNPIIRNRIENLISQCRL"
FT mat_peptide 10. .732
FT mat_peptide 751. .2334
FT old_sequence 969. .971
FT /replace="tgg"
FT /citation=[1]
FT old_sequence 1112. .1114
FT /replace="aag"
FT /citation=[1]
FT old_sequence 1116. .1117
FT /replace="ta"
FT /citation=[1]
FT old_sequence 1200. .1202
FT /replace="aga"
FT /citation=[1]
XX
SQ Sequence 2359 BP; 844 A; 390 C; 460 G; 665 T; 0 other;
D90260 Length: 2359 January 8, 2004 16:01 Type: N Check: 8298 ..
1 ggctataaaa tggcttcttt aatttataga cagttattat caaactcata
51 tgttacaaac atctctgacg aagttaatga aattggaact aaaaaaacaa
101 ctaacgttac tgttaatcca gggccattcg cacaaacggg atatgcgcct
151 gttgactggg gacatggtga attgcctgat tctacattgg tgcagccaac
201 tcttgatggt ccataccaac ccacctcact caacttacca gttgattatt
251 ggatgttaat tgcgcctact agagaaggaa aagttgctga aggtacaaat
301 acgactgaca gatggttcgc ttgtgtacta gttgaaccaa atgtgcaaaa
351 tacacaaaga caatacgtat tagatgggca aaatgtccaa ttgcatgtct
401 caaacgattc aagtacttcg tggaaattta tattattcat taaattgacg
451 ccttatggaa cgtacactca atattcaaca ttatcaacgc cgcataagtt
501 gtgcgcgtgg atgaaaagag ataacagagt gtactggtat caaggagcga
551 caccgaacgc atcagagagc tattacttga ccataaacaa tgataacagc
601 aacgtttcaa gtgacgctga attttattta ataccgcaat cgcagaccgc
651 tatgtgtaca caatatataa acaatggttt accaccaatt cagaatacca
701 ggaatattgt accagtaaat attacatcta gacagattaa agacgtaaga
751 gctcagatga atgaagacat agtaatatca aaaacctcgt tatggaaaga
801 aatgcaatat aatagagata taatcattag atttaaattt gctaattcaa
851 taatcaaatc aggtggacta ggttataagt ggtcggaaat atcatttaag
901 cccatgaact atcaatatac gtatacgaga gatgaagaag aagtaacagc
951 acatacaaca tgttcagtga atggtgtcaa tgattttaat tataatggag
1001 gtacgttgcc tactgatttt gcaatatcga gatttgaggt cataaaggaa
1051 aattcttatg tatatgtaga ttattgggat gattcacaag catttagaaa
1101 tatggtatat gtgaggtcgt tagctgcaaa tttgaatgat gtagtatgca
1151 gtggaggttc ttacagtttt gcgttacctg taggcaatca tccggtgatg
1201 agtggtggtg cagtgacctt aacatctgct ggcgtaacac tatcaaccca
1251 gtatacagat tatgtatcat taaattcatt gcaattcaga ttcagattgg
1301 cggtgagcga accatcattt tccatctcgc gaactagaat gagtggcata
1351 tatggattac cagctgtaaa tccaaataat agcgcagaat attatgagat
1401 agctggtaga ttctcactca tatcactagt accaacaaat gatgactatc
1451 aaacgccaat cgctaattca gttaccgtaa gacaagattt agagagacaa
1501 ttaggcgagt taagagaaga atttaattcg ttgtcacaag aaatagctgt
1551 ttcccaactt atagatctag caacattacc gcttgatatg ttctcaatgt
1601 tctctggaat aaaatcaacg gtagaggcag taaaatctat gactacgaat
1651 gtgatgaaaa gatttaaaac atcaagttta gcaaacgcca tatctgattt
1701 aacaagtaat atgtcggaag cggcatcatc tgtaagattg acgtcagtga
1751 gatcggtggg cactattaca ttgccaagag ctagggtttc attgcaagtg
1801 ggcgatgact tgaggtccat gcaagacgta tcaacacaag tgtcaaatgt
1851 gagtagaaat ttaagattga aagagttcac gacgcaaact gatactttaa
1901 gctttgatga catctctgca gctgtattga agacgaaact agataaatcg
1951 acgcaaattt cacaacaaac aatgccagat attatagctg agtcatctga
2001 gaagtttata ccgaagagat cgtatagaat agttgatgag gatattcgat
2051 tcgaaactgg aattgacgga acgttttatg cttacaaagt cgatacattt
2101 aatgaaattc cgtttgatat ggaacgattt aataaattaa taacagattc
2151 accagtttta tcagcaataa tagactttaa gacgttaaag aacttaaacg
2201 acaattatgg aataacaaag aaacaagcca tggaactatt acattcaaat
2251 ccaaagacat taaaagagtt tataaataat aataatccaa taattagaaa
2301 tagaatcgaa aacttaatat cgcagtgtag gttgtagctg tctattttaa
2351 gatgtgacc