Sequence of DPV Amur/Soochong virus
Soochong virus-1 isolate SC-1 putative polymerase mRNA, complete cds.
ACC No: DQ056292
Dated: 2006-01-11 | Length: 6533 | CRC: 42332453
ID DQ056292 standard; mRNA; VRL; 6533 BP.
XX
AC DQ056292;
XX
SV DQ056292.1
XX
DT 01-JUN-2005 (Rel. 84, Created)
DT 11-JAN-2006 (Rel. 86, Last updated, Version 3)
XX
DE Soochong virus-1 isolate SC-1 putative polymerase mRNA, complete cds.
XX
KW .
XX
OS Soochong virus-1
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC unclassified Hantavirus.
XX
RN [1]
RP 1-6533
RX PUBMED; 16372283.
RA Baek L.J., Kariwa H., Lokugamage K., Yoshimatsu K., Arikawa J.,
RA Takashima I., Kang J.I., Moon S.S., Chung S.Y., Kim E.J., Kang H.J.,
RA Song K.J., Klein T.A., Yanagihara R., Song J.W.;
RT "Soochong virus: An antigenically and genetically distinct hantavirus
RT isolated from Apodemus peninsulae in Korea";
RL J. Med. Virol. 78(2):290-297(2006).
XX
RN [2]
RP 1-6533
RA Song J.-W., Kang H.J., Kim E.-J., Moon S.-S., Baek L.J.;
RT ;
RL Submitted (09-MAY-2005) to the EMBL/GenBank/DDBJ databases.
RL Microbiology, College of Medicine, 5Ga Anam-dong, Sungbug-gu, Seoul
RL 136-701, Korea
XX
FH Key Location/Qualifiers
FH
FT source 1. .6533
FT /db_xref="taxon:286541"
FT /mol_type="mRNA"
FT /organism="Soochong virus-1"
FT /isolate="SC-1"
FT /specific_host="Apodemus peninsulae"
FT /segment="L"
FT CDS 38. .6493
FT /codon_start=1
FT /db_xref="GOA:Q4TUZ1"
FT /db_xref="InterPro:IPR007099"
FT /db_xref="InterPro:IPR007322"
FT /db_xref="UniProtKB/TrEMBL:Q4TUZ1"
FT /product="putative polymerase"
FT /protein_id="AAY56324.1"
FT /translation="MDKYREIHNKLKGYSPGTLTAVECIDYFDRLYAVRHDIVDQMIKH
FT DWSDNKDSEEPIGKVLLFAGVPSNIITALEKKIIPNHPTGKNLKAFFKMTPDNYKITGT
FT TIEFVEVTVTADVDKGIREKRIKYEAGLAYIEQELHKFYLKGEIPQPYKITFNVVAVRT
FT DGSNITTQWPSRRNDGVVQYMRLVQAEISYVREHLIKPDERAALEAMFNLKFNISTYKS
FT QPYYIPDYKGIDPIGANIEDLVEYSKEWLSRARNFSFFEVKGTAVFECFNSNEASHCQK
FT YPMSRKPRNFLLIQCSLITSYKPATTLSDQINSRRACAYILNLIPDTPASYLIHDIAYR
FT YINLTREDMINYYAPRIQFKQTQNIREPGTFKLTSSMLRAESKAMLDLLNNHKSGEKYG
FT QQIESLNIASHIVQSESVSLITKILSDLELNITEPSTQEFLTTKHTYVDTVLDKFFQNE
FT TQKYLIDILKKTTAWHIGHLVRDITESLIAHSGLKRSKYWSLHSYNNGNVILFILPSKS
FT LEVAGSFIRFITVFRMGPGLVDKENLDTILLDGEYQWGVSKVMSIDLNRLLALNIAFEK
FT ALIATATWFQYYTEDQGQFPLQYAIRSVFANHFLLSVCQKMKLCAIFDNLRYLIPAVTS
FT LYSGFPSLIEKLFERPFKSALEVYVYYNIKSLLVALAQNNKARFYSKVKLLGLTVDQST
FT VGASGIYPSFMSRIVYKHYRSLISEVTTCFFLFEKGLHGNMNEEAKIHLETVEWALKFR
FT EKEEKYDESLVENGYMMWELIENPDLAEQQLYCQDAIELAAIELNKVLSTKSSVVANSI
FT LNKNWEGPYFSQTRNISLKGMSGQVQEDGHLSSSVTIIEAIRYLSNSRHNPSLLKLYEE
FT TREQKAMARIVRKYQRTEADRGFFITTLATRCRLEIIEDYYDAIAKNITEEYISYGGEK
FT KILAIQGALEKALRWASGESFIELSNQKFIRMKRKLMYVSADATKWSPGDNSAKFRRFT
FT AMLHNGLPNDKLKNCVIDALKQVYKTDFFMSRKLRNYIDSMENHDPHIKQFLDFFPDGH
FT HGEVKGNWLQGNLNKCSSLFGVAMSLLFKQIWSQLFPELDCFFEFAHHSDDALFIYGYL
FT EPVDDGTDWFLFVSQQIQAGHLHWFSVNTEMWKSMFNLHEHILLLGSIKISPKKTTVSP
FT TNAEFLSTFFEGCAVSIPFVKILLGSLSDLPGLGYFDDLAAAQSRCVKALDLGASPQVA
FT QLAVALCTSKVERLYGTAPGMVNHPAAYLQVKHSDTPIPLGGNGAMSIMELATAGIGMS
FT DKNLLKRALIGYLHKRQKSMLYILGLFKFLMKLSDETFQHERLGQFSFIGKVQWKIFTP
FT KSEFEFADMYTPKFLELWSNQHVTYDYIIPKGRDNLLIYLVRKLNDPSIVTAMTMQSPL
FT QLRFRMQAKQHMKVCRLEGDWVTFREVLAAANSFAEGYVPDNQDIDLFQTLTSCTFSKE
FT YAWKDFLNGIHCDVIPTKQVQRAKVARTFTVREKDQIIQNSIPAVIGYKFAVTVDEMSD
FT VLDTAKFPDSLSVDLKTMKDGVYRELGLDISLPDVMKRIAPMLYKSSKSRVVIVQGNVE
FT GTAEAICAYWLRSMSLVKTIRVKPHKEVLQAVSIFNRKEDIGQQKDLAALKLCIEVWRW
FT CKANNAPYRDWFHALWFEDKTFSEWLDRFSRVGVPPVDPEIQCAALMIADIKGDYSILQ
FT LQANRRAYSGKQYDAYCVQTYNEETKLYEGDLRVTFNFGLDCARLEIFWDKKTYILETS
FT ITQKHVLKIMMDEVSKELLRCGMRFNTEQVQGVRHMVLFKTESGFEWGKPNIPCIVYKN
FT CVLRTSLRTTQAINRKFMITIKDDGLRAIAQHDDDSPRFLLAHAFHTIRDIRYQAVDAV
FT SNVWFIHRGVKLYLNPIISSGLLENFMKNLPAAIPPAAYSLIMNRAKISVDLFMFNDLL
FT KLINPSNTLDLSGLETTGDGFSTVSSMSSRLWSEEMSLVDDDEELDDEFTIDLQDVDFE
FT NIDIEADIEHFLQDESFYTGDLLISTEETEVKKMRGIVKILEPVRLIKSWVSRGLSIEK
FT VYSPVNIILMSRYISKTFNLGNKQVSLLDPYDLTELESIVRGWGECVIDQFDTLDKEAQ
FT SMVVNKGICPEDVIPDSLFSFRHTMVLLRRLFPQDSISSFY"
XX
SQ Sequence 6533 BP; 2172 A; 1055 C; 1371 G; 1935 T; 0 other;
dq056292 Length: 6533 11-JAN-2006 Type: N Check: 8656 ..
1 tagtagtaga ctccggaaat gacaagagct aaaaaagatg gacaaatata
51 gagaaattca taacaagtta aaggggtatt ctcctggcac actgactgca
101 gtagagtgta tagattattt tgataggtta tatgcagtca ggcatgatat
151 tgtagatcaa atgataaagc atgactggtc tgacaacaaa gattcagaag
201 aaccaatagg gaaagttcta ctttttgcag gagttccttc aaacattata
251 acagcactgg aaaaaaagat tattccaaat catccaacag ggaaaaacct
301 taaagcattt tttaagatga cacctgacaa ttataagatt accgggacta
351 ctatagaatt tgtggaggtg acagttacag cagatgtgga caaggggata
401 agagagaaaa ggattaagta tgaagcagga ttagcctata ttgagcagga
451 attgcacaaa ttctatctaa aaggtgaaat tccacagcca tacaagatta
501 catttaatgt tgttgcagtc cggactgatg gctcaaatat tacaactcaa
551 tggcctagta gaagaaatga cggtgttgtt cagtacatga gattagtcca
601 ggctgagata agttatgttc gagagcactt gatcaaacca gatgaaaggg
651 cagctctaga ggcaatgttc aatttgaaat ttaacataag cacatacaaa
701 agtcagcctt attacatccc agattataaa ggcattgatc caataggtgc
751 aaatattgaa gatttggttg agtattccaa agagtggttg tctagagcaa
801 ggaacttttc tttctttgag gttaagggaa cagctgtttt tgagtgtttt
851 aattcaaatg aagcaagtca ctgccaaaag tacccaatgt ctcgcaaacc
901 taggaatttt ctcttaatac agtgttctct gattacatcg tataagcctg
951 ccaccacatt atcagatcaa attaatagca ggagggcctg tgcatatatc
1001 cttaatctca ttccagacac accagcatca tacttaattc atgatatagc
1051 atataggtat attaatttga caagagaaga tatgataaat tattatgcac
1101 caaggattca gtttaaacag acacaaaata tacgggaacc tggcacgttt
1151 aagttgacat caagtatgct gagggcagag tcaaaggcta tgctagatct
1201 cctcaataat cataagagtg gagagaaata tggccaacaa attgagagtc
1251 taaatatagc aagtcatatt gttcaatctg agtctgtcag tttaataacc
1301 aagatcttat ctgacttgga gttaaatatc actgagcctt caactcagga
1351 gttcctgaca accaaacaca cttatgttga tacagtattg gataagtttt
1401 ttcaaaatga aacgcaaaaa tatttaattg acattttaaa gaaaactaca
1451 gcatggcata tagggcatct agtcagggat attacagaaa gtttaattgc
1501 ccactccgga ttaaagaggt caaaatattg gtcattacac tcatataata
1551 atggcaatgt gattttattt atccttccgt caaagtcact cgaagtagca
1601 ggatccttta taaggtttat tactgtattc aggatgggtc caggtttagt
1651 tgataaagag aatttggata ctatcttgct tgatggtgag tatcaatggg
1701 gggtttcaaa agtgatgagc attgatttaa acaggctatt ggcattaaat
1751 attgctttcg aaaaggctct aattgcaaca gctacgtggt ttcagtatta
1801 tactgaggat cagggacagt tccccctaca atatgcaata cggtcagtat
1851 ttgcaaacca tttccttttg tcagtttgtc aaaagatgaa actctgtgca
1901 atttttgata atttgagata ccttatacca gctgtcacat ctttatactc
1951 aggctttcct tcattgatag aaaaactctt tgaaagacct ttcaagtcag
2001 cattggaagt ttatgtttat tataatataa aaagtctatt agtagctttg
2051 gcgcaaaata ataaggctcg gttctattca aaagtcaaat tattagggtt
2101 aactgtagat cagtcaactg taggtgcaag tgggatttat ccctcattca
2151 tgtcacgtat agtatataag cactatagaa gtctaatttc agaagtaaca
2201 acatgttttt tcttatttga aaaaggactc catggtaata tgaacgaaga
2251 ggcaaaaatc catttagaga cagtagaatg ggctcttaaa ttcagagaaa
2301 aggaggaaaa gtatgatgaa tcactagtgg agaatggtta catgatgtgg
2351 gaactcatag aaaatcctga cttggcagaa caacagctgt attgccaaga
2401 tgctatcgaa ctggcagcaa tagaattaaa caaggtgttg tccacaaagt
2451 caagtgttgt tgcaaatagt atattaaata aaaattggga aggtccttac
2501 tttagccaaa ccaggaatat tagtttaaag ggcatgtcag ggcaggtaca
2551 agaggatggg catttatctt cttctgttac aattattgaa gcaatacgct
2601 atttatcaaa ttcacgacat aatcctagtc tattgaaact gtatgaagaa
2651 acaagggaac aaaaagctat ggctagaata gttagaaaat accagaggac
2701 agaggccgat agaggcttct tcattaccac attggcaaca agatgtagac
2751 tagaaataat tgaggactat tatgatgcta ttgcaaaaaa tattacagaa
2801 gagtatattt cctatggagg tgaaaagaag atcttggcca tccagggggc
2851 actagaaaag gctctgaggt gggcatctgg tgaaagtttt atagaactga
2901 gcaatcaaaa atttataaga atgaagcgga agttgatgta tgttagtgca
2951 gatgcaacaa agtggtctcc tggggataat tcagcaaaat ttcggagatt
3001 tactgctatg ttacacaatg gacttcctaa tgataaatta aaaaactgtg
3051 tcattgatgc tctaaagcaa gtctataaaa cagatttctt tatgtcaaga
3101 aaactaagaa attatattga tagcatggaa aatcatgacc ctcacattaa
3151 gcaattcctg gattttttcc ctgatggaca ccacggggag gttaaaggga
3201 attggttaca aggaaattta aataaatgtt cttcattgtt tggcgtggca
3251 atgtccctat tattcaagca gatttggtcc caattatttc cggaacttga
3301 ctgctttttt gagtttgcac atcattcaga tgatgcatta tttatctatg
3351 gatatcttga accagtcgat gatgggactg actggttttt atttgtgtca
3401 cagcaaatcc aggcaggtca tttacattgg tttagtgtaa acacagagat
3451 gtggaaaagt atgttcaact tacatgaaca tatcctactt cttggctcta
3501 taaaaatttc acctaagaaa actactgtct cccctaccaa tgcagaattt
3551 ttatcaacat tctttgaagg ttgtgctgtt tcgatcccgt ttgttaaaat
3601 actgcttggt tcattatcag atttaccagg attagggtac tttgatgact
3651 tggcagcagc acaaagtagg tgtgtaaagg cacttgattt gggcgcttca
3701 cctcaggtag cacaattagc tgtagccttg tgcacaagta aggttgaaag
3751 attgtatgga acagcacctg ggatggtcaa ccacccagct gcatatctcc
3801 aagtaaaaca tagtgataca ccaatcccgt taggaggtaa tggggctatg
3851 tcaataatgg aactggctac agctgggata gggatgtcag ataaaaacct
3901 attaaagcgt gcgctcatag gttatttaca taagaggcaa aagtctatgt
3951 tatatatact ggggctattt aaattcctga tgaaactctc cgatgagact
4001 tttcaacatg agaggttggg tcagttctca tttattggaa aggtacagtg
4051 gaaaatcttt acacccaaat ctgaatttga gtttgctgac atgtatacac
4101 ccaaattctt agaactatgg agcaatcaac atgtgacata tgactatata
4151 attccgaaag gaagagataa tttgcttatt tatcttgtaa gaaaactaaa
4201 tgacccaagc attgtaactg ccatgactat gcagtcaccc ttgcaactca
4251 gatttagaat gcaagcaaaa caacatatga aagtttgtag attagagggt
4301 gactgggtga catttaggga agttcttgct gctgcaaata gctttgcaga
4351 aggctatgtt cctgataatc aggatataga tttattccag acattaacaa
4401 gttgcacatt ctctaaagag tatgcctgga aagatttttt aaatggaatt
4451 cactgtgatg tcatacctac aaaacaagtt cagagagcaa aagtggccag
4501 aacttttacg gtgagagaaa aggaccaaat tatacaaaat agtattccag
4551 ccgttatagg atataagttt gccgtaactg tggatgaaat gtctgacgtt
4601 ttagacacag caaaattccc agattcactt tctgttgatc tcaaaacaat
4651 gaaagatgga gtatatcgag agctcggtct tgatatatcc ttacctgatg
4701 tcatgaaaag gattgcacca atgctgtaca agtcgtcaaa atctagagta
4751 gttattgtac aagggaatgt tgagggaaca gcagaagcta tctgtgctta
4801 ctggttacgg tcaatgtctc tggtaaagac catccgagtc aagccccata
4851 aagaagttct ccaggcagtg tcgattttta ataggaaaga ggatataggg
4901 cagcaaaaag acttagctgc tcttaaatta tgtatagaag tatggaggtg
4951 gtgcaaagca aataatgcac catacaggga ttggtttcat gctttatggt
5001 ttgaagataa aactttttca gagtggctgg ataggttttc tagggtgggt
5051 gtcccacctg ttgatccaga aatccagtgt gcagccttaa tgattgctga
5101 tattaaggga gactattcaa tattacaatt gcaagcgaat aggagagctt
5151 attcaggtaa acagtatgat gcatattgtg tacaaacata taatgaagaa
5201 acaaaactat atgaagggga tttaagggtt acatttaatt ttggccttga
5251 ttgtgctagg ttggagattt tctgggataa aaagacatat atcttagaaa
5301 catcaataac acagaaacat gttttaaaga tcatgatgga tgaggtgtca
5351 aaagagcttt taaggtgtgg gatgagattt aataccgagc aggttcaagg
5401 tgtaagacac atggtcctgt ttaaaactga gtctggtttt gaatggggga
5451 agccaaatat cccctgtata gtctataaaa actgtgtgct acggacaagc
5501 ttgaggacaa cacaggcaat caaccgtaag tttatgataa caataaaaga
5551 tgacggtctc cgtgctatcg cacagcacga tgatgatagt ccccggtttc
5601 tattagcaca tgcttttcat acaattaggg acataagata tcaggcagtt
5651 gatgctgtaa gtaatgtatg gtttattcac cgaggagtca agctatattt
5701 aaatcctatt atttcttcag ggttgttaga gaactttatg aaaaacctcc
5751 ctgcagctat cccacctgct gcatattcgt taataatgaa ccgtgcaaaa
5801 atatctgttg atctctttat gttcaatgat ttattgaagc tcataaaccc
5851 tagcaacacc ttagacttat ctggtcttga gaccacagga gatgggttta
5901 gcacagttag ttcaatgtca agccgactat ggtctgaaga gatgagttta
5951 gtagatgatg atgaagaatt ggatgatgaa ttcacaatcg atttgcagga
6001 tgtagacttt gaaaacattg acattgaggc agatattgag cattttctcc
6051 aggatgaaag cttttacact ggggatttgt tgataagcac agaagaaact
6101 gaggttaaaa agatgagggg tattgtaaaa atacttgagc ctgtaaggtt
6151 aattaaaagt tgggtatcac gagggttatc aatcgaaaag gtatacagtc
6201 cagtcaacat catcttgatg tctaggtata tttcaaaaac ttttaactta
6251 ggtaataagc aagtgtctct attagatcca tatgatttaa ctgaattaga
6301 aagtattgtc cgagggtggg gtgagtgtgt cattgatcaa tttgacaccc
6351 ttgataaaga agcccaaagc atggtagtca ataaggggat ctgtcctgaa
6401 gatgttatac cagattcatt gttttctttc cgacacacaa tggtgttgtt
6451 acgccgttta tttccacagg attctatttc ctctttttat taggctttat
6501 ttctttttca ttttccggag cctactacta cta