Sequence of DPV Cocksfoot streak virus
Cocksfoot streak virus isolate UK-1-04 FHCP36C HC-Pro protein (HC-Pro) gene, partial cds.
ACC No: DQ067587
Dated: 2005-06-20 | Length: 1371 | CRC: -1607875963
!!NA_SEQUENCE 1.0
ID DQ067587 standard; genomic RNA; VRL; 1371 BP.
XX
AC DQ067587;
XX
SV DQ067587.1
XX
DT 20-JUN-2005 (Rel. 84, Created)
DT 20-JUN-2005 (Rel. 84, Last updated, Version 1)
XX
DE Cocksfoot streak virus isolate UK-1-04 FHCP36C HC-Pro protein (HC-Pro)
DE gene, partial cds.
XX
KW .
XX
OS Cocksfoot streak virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1371
RA Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT "The dynamics of selection pressures acting on a viral suppressor of RNA
RT silencing in the field";
RL Unpublished.
XX
RN [2]
RP 1-1371
RA Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT ;
RL Submitted (19-MAY-2005) to the EMBL/GenBank/DDBJ databases.
RL Plant Virology, Nerc/Centre For Ecology and Hydrology (Ceh), Mansfield
RL Road, Oxford OX1 3SR, Uk
XX
FH Key Location/Qualifiers
FH
FT source 1. .1371
FT /country="United Kingdom:England"
FT /db_xref="taxon:192452"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Cocksfoot streak virus"
FT /isolate="UK-1-04 FHCP36C"
FT /isolation_source="Wytham Woods Yellow Ant Reserve,
FT Oxfordshire"
FT gene <1. .>1371
FT /gene="HC-Pro"
FT CDS <1. .>1371
FT /codon_start=1
FT /note="helper component proteinase"
FT /gene="HC-Pro"
FT /product="HC-Pro protein"
FT /protein_id="AAY79363.1"
FT /translation="SQGEEFWAGFNETFVTKRKDPTHTGECRARDTVRQCGEAAGILWQ
FT GMFPCFKITCGACQDQIGITADDIVKGELIDNLFEASANLERLRIQPSMSSTLKAVATK
FT LKPAQDHVQICQQIIQAIGDDNDGPARHLRLATEKFITLQASDAEKCSDISKNLLLVAN
FT FIKNRRDGLVRGDVKEFKNKISNKAHVNPVLMCDNQLDANGNFVWGERSHHAKRFFDNF
FT YTQVNVADDYDAHVLRKHPRGTRRLAIDRLILQLDLKALQEHVVGFPIERVPITSSCIS
FT KKYGAFVFTCSCITLDDKTPLYSDIIMPTKQHLVIGNSGDSKLIDFPETYRDKLWIARD
FT GYCYVNIFLAMLVNINEVDAKNFTKTIRDRVIPQLKEWPTMRDLAASLHMLTVLFPDTR
FT QAELPRILVDHKNKMMHVVDSYGSSDIGFHILKAGTVSQLLPFMFDSTEGEMKNYQVG"
XX
SQ Sequence 1371 BP; 427 A; 278 C; 316 G; 350 T; 0 other;
DQ067587 Length: 1371 June 28, 2005 08:34 Type: N Check: 2389 ..
1 tcgcaagggg aagaattttg ggccggcttc aatgagacat ttgtcaccaa
51 aaggaaagat cctacgcata cgggtgagtg tagagctcgc gatactgtga
101 gacaatgcgg tgaagcagct ggcattcttt ggcaagggat gtttccgtgc
151 ttcaagataa cgtgtggagc ttgtcaagat cagatcggaa tcacagccga
201 cgacattgtc aaaggtgaac tcatcgacaa tttgtttgaa gcatctgcaa
251 atcttgagcg tttacgaatt caacctagta tgtcaagcac tcttaaagcc
301 gtcgcaacta aactcaaacc agctcaggat catgtacaaa tttgccagca
351 aataattcag gcgattggtg acgataacga tgggccagcg agacatctgc
401 gcttagccac tgagaaattc ataacattgc aagcatcaga cgccgagaag
451 tgcagtgata tttcaaagaa ccttctgtta gttgcgaatt tcattaagaa
501 cagaagagat ggtcttgtac gtggcgacgt taaagagttc aagaataaga
551 tatccaacaa agcgcatgtt aaccctgttc tcatgtgtga caatcaacta
601 gacgccaacg gaaactttgt atggggggaa agaagtcatc acgcgaaacg
651 gttctttgac aatttctata cgcaagtgaa cgtagctgat gattacgacg
701 cgcatgtttt gagaaaacac ccaagaggca ctcgcagatt agcaattgat
751 cgcttgattc tacagctaga tttaaaggct cttcaggaac atgtggtggg
801 atttccaatc gaacgagtac ctataacttc atcatgcata agcaagaaat
851 acggagcctt tgtgttcaca tgcagttgta ttacacttga tgataaaaca
901 ccactctact cagatatcat catgcccaca aagcaacatt tagtgattgg
951 gaactcaggg gattcaaagc tcatcgattt ccctgagaca tatcgagaca
1001 aattgtggat cgcaagagat gggtactgct atgttaatat tttccttgcc
1051 atgttggtga atattaatga agttgatgcc aagaacttca ccaagacaat
1101 tcgcgatcgc gtgataccac agctgaagga atggccaacc atgagagacc
1151 tggcagcgag tttacacatg ttaacagtct tgttccctga tacaagacag
1201 gccgaactac cacgcatact tgttgatcac aaaaacaaaa tgatgcatgt
1251 cgtggattcg tatggttcga gtgacattgg gttccatata cttaaagctg
1301 ggacagtcag tcaattgttg ccatttatgt ttgattcaac cgagggggaa
1351 atgaaaaatt atcaagtcgg a