Sequence of DPV Cocksfoot streak virus
Cocksfoot streak virus isolate UK-1-04 GHCP628B HC-Pro protein (HC-Pro) gene, partial cds.
ACC No: DQ067595
Dated: 2005-06-20 | Length: 1371 | CRC: -378957435
!!NA_SEQUENCE 1.0
ID DQ067595 standard; genomic RNA; VRL; 1371 BP.
XX
AC DQ067595;
XX
SV DQ067595.1
XX
DT 20-JUN-2005 (Rel. 84, Created)
DT 20-JUN-2005 (Rel. 84, Last updated, Version 1)
XX
DE Cocksfoot streak virus isolate UK-1-04 GHCP628B HC-Pro protein (HC-Pro)
DE gene, partial cds.
XX
KW .
XX
OS Cocksfoot streak virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1371
RA Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT "The dynamics of selection pressures acting on a viral suppressor of RNA
RT silencing in the field";
RL Unpublished.
XX
RN [2]
RP 1-1371
RA Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT ;
RL Submitted (19-MAY-2005) to the EMBL/GenBank/DDBJ databases.
RL Plant Virology, Nerc/Centre For Ecology and Hydrology (Ceh), Mansfield
RL Road, Oxford OX1 3SR, Uk
XX
FH Key Location/Qualifiers
FH
FT source 1. .1371
FT /country="United Kingdom:England"
FT /db_xref="taxon:192452"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Cocksfoot streak virus"
FT /isolate="UK-1-04 GHCP628B"
FT /isolation_source="Wytham Woods Yellow Ant Reserve,
FT Oxfordshire"
FT gene <1. .>1371
FT /gene="HC-Pro"
FT CDS <1. .>1371
FT /codon_start=1
FT /note="helper component proteinase"
FT /gene="HC-Pro"
FT /product="HC-Pro protein"
FT /protein_id="AAY79371.1"
FT /translation="SQGEEFWAGFNETFVAKRKDPKHTGECRARDTVRQCGEAAGILWQ
FT GMFPCFKITCGACQDQIGITADDIVKGELIDNLFEASANLERLRIQPSMSGTLNALATK
FT LKPAQDHVQICQQIIQAIGDDNDGPARHLRLATEKFITLQASDAEKCNDISKNLLLVAN
FT FIKNRRDGLVRGDVREFKNKISNKAHVNPVLMCDNQLDANGNFVWGERSHHAKRFFDNF
FT YTQVNVADDYDAHVLRKHPRGTRRLAIDRLILQLDLKALQEHVVGFPIERAPITSSCIS
FT KKYGAFVFTCSCITLDDKTPLYSDIIMPTKQHLVIGNSGDSKLIDFPETYRDKLWIARD
FT GYCYVNIFLAMLVNINEVDAKNFTKTIRDRVIPQLKEWPTMRDLAASLHMLTVLFPDTR
FT QAELPRILVDHKNKMMHVVDSYGSSDIGFHILKAGTVSQLLPFMFDSTEGEMKNYQVG"
XX
SQ Sequence 1371 BP; 424 A; 284 C; 318 G; 345 T; 0 other;
DQ067595 Length: 1371 June 28, 2005 08:34 Type: N Check: 2144 ..
1 tcgcagggtg aggagttttg ggcaggcttc aacgaaacat ttgttgccaa
51 gaggaaagat cccaaacata cgggcgaatg tagagctcgt gatactgtga
101 gacaatgcgg tgaggcagca ggcatccttt ggcaaggtat gtttccgtgc
151 ttcaagataa catgtggagc ttgtcaagat cagattggaa taacagcaga
201 cgacatcgtt aaaggtgagc tcattgacaa tttgtttgaa gcatcagcaa
251 accttgagcg cttacgaatt caacccagca tgtcaggcac tctcaatgct
301 cttgcaacta aactcaagcc agctcaggat catgtgcaaa tttgccagca
351 aataattcag gcgattggtg atgacaacga tggaccagca agacatctgc
401 gcttagccac tgaaaaattc ataactttgc aagcgtcaga tgccgagaag
451 tgcaatgata tttcaaagaa ccttctgtta gttgcgaact ttatcaagaa
501 cagaagagat ggtcttgtgc gcggcgacgt aagagagttc aagaacaaga
551 tatctaacaa agcgcacgtt aaccctgttc ttatgtgtga caatcaacta
601 gatgctaatg gaaattttgt atggggggaa aggagtcatc atgcaaaacg
651 gttcttcgat aacttctaca cgcaagtcaa cgtagctgat gattatgatg
701 cgcacgtttt gaggaagcat ccgagaggca ctcgcagatt agcaattgat
751 cgcttaattc tacaactgga cttgaaggct cttcaagaac atgtggtggg
801 attcccaatc gagcgagcac ccataacttc atcgtgcata agcaagaaat
851 atggtgcctt tgtgttcaca tgcagttgca tcacacttga tgacaagaca
901 ccactctatt cagatatcat aatgcccacg aagcagcact tagttattgg
951 aaactcaggg gattcaaaac tcatcgactt tcctgagaca tatcgagaca
1001 aattgtggat cgcaagagat gggtattgct atgtcaacat tttccttgct
1051 atgttggtga acatcaatga agttgatgcc aagaacttta ccaagacgat
1101 tcgagatcgc gtgataccac aactgaaaga atggccaact atgagagatc
1151 tggcagcgag tttacatatg ttaacagtct tgttccctga cacaagacaa
1201 gctgaactac cacgcatact tgttgaccac aagaacaaaa tgatgcatgt
1251 tgtggattcg tatggctcaa gtgacattgg attccatata ctcaaagctg
1301 gaacggtcag tcaattgctg ccgttcatgt ttgactcaac tgagggcgaa
1351 atgaaaaact accaagtcgg t