Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate Chuporn CPN1 coat protein (CP) gene, partial cds.

ACC No: DQ085858

Dated: 2005-07-05 | Length: 861 | CRC: 1048276866

                !!NA_SEQUENCE 1.0
ID   DQ085858   standard; genomic RNA; VRL; 861 BP.
XX
AC   DQ085858;
XX
SV   DQ085858.1
XX
DT   05-JUL-2005 (Rel. 84, Created)
DT   05-JUL-2005 (Rel. 84, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate Chuporn CPN1 coat protein (CP) gene, partial
DE   cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-861
RA   Chowpongpang S., Attathom S., Kositratana W.;
RT   "PRSV resistance of transgenic papaya against papaya ringspot potyvirus
RT   from different geographic in Thailand";
RL   Unpublished.
XX
RN   [2]
RP   1-861
RA   Chowpongpang S., Attathom S., Kositratana W.;
RT   ;
RL   Submitted (03-JUN-2005) to the EMBL/GenBank/DDBJ databases.
RL   National Center for Genetic Engineering and Biotechnology, National Science
RL   and Technology Development Agency, 113 Pahonyothin Science Park,
RL   Klongluang, Pathumtanee 12120, Thailand
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .861
FT                   /country="Thailand"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: P"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="Chuporn CPN1"
FT   gene            <1. .861
FT                   /gene="CP"
FT   CDS             <1. .861
FT                   /codon_start=1
FT                   /note="capsid protein"
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="AAY96776.1"
FT                   /translation="SKTEAVDAGLNEKLKDKEKQKEEKDKQKGKENNEASDGNDVSTST
FT                   KTGERDRDVNAGTSGTFTVPRVKLFTDKMILPRIKGKTVLNLNHLLQYNPQQIDISNTR
FT                   ATQSQFEKWYEGVRNDSGLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGESQVNY
FT                   PIKPLIEHATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDF
FT                   YEVNSKTPDRVREAHMQMKAAALRNTGRRMFGMDGSVSNKEENTERHTVEDVNRDMHSL
FT                   LGMRN"
XX
SQ   Sequence 861 BP; 298 A; 156 C; 207 G; 200 T; 0 other;

  DQ085858  Length: 861  July 12, 2005 08:41  Type: N  Check: 7163  ..

       1  tccaaaactg aagctgtgga tgctggtctt aatgaaaagc tcaaagataa
      51  agaaaaacag aaagaagaaa aagataaaca aaaaggtaaa gaaaataatg
     101  aagctagtga cggaaacgat gtgtcaacta gcacaaaaac tggagagaga
     151  gatagagatg tcaatgccgg aactagtggt actttcactg ttccgagagt
     201  aaaattattt actgacaaga tgattttacc aagaattaag ggaaaaactg
     251  tccttaattt aaatcatctt cttcagtata atccgcaaca aatagacatc
     301  tcaaacactc gtgccactca atctcaattc gaaaagtggt atgagggagt
     351  gaggaatgat tccggtctta atgataacga aatgcaagtg atgttaaatg
     401  gtttgatggt ttggtgcatc gaaaatggaa catccccaga catatctggt
     451  gtctgggtga tgatggatgg ggaatcccaa gtcaattatc ccatcaagcc
     501  tttgatcgaa catgcaactc cttcgttcag gcaaatcatg gctcacttca
     551  gtaacgcggc agaggcgtac atcgcaaaga ggaatgctac tgagaggtac
     601  atgccgcggt atggaatcaa gaggaatttg actgacatta gtctcgctag
     651  atatgctttc gacttctatg aggtaaactc aaaaacacct gatagggttc
     701  gtgaggctca tatgcagatg aaggctgcag cgctgcgcaa cactggtcgc
     751  agaatgtttg gaatggacgg cagtgtcagt aacaaggaag aaaacacgga
     801  gagacacaca gtggaagatg tcaacagaga catgcactct ctcctgggta
     851  tgcgcaattg a