Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate Roi-et ROI1 coat protein (CP) gene, partial cds.

ACC No: DQ085863

Dated: 2005-07-05 | Length: 861 | CRC: -1193906412

                !!NA_SEQUENCE 1.0
ID   DQ085863   standard; genomic RNA; VRL; 861 BP.
XX
AC   DQ085863;
XX
SV   DQ085863.1
XX
DT   05-JUL-2005 (Rel. 84, Created)
DT   05-JUL-2005 (Rel. 84, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate Roi-et ROI1 coat protein (CP) gene, partial
DE   cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-861
RA   Chowpongpang S., Attathom S., Kositratana W.;
RT   "PRSV resistance of transgenic papaya against papaya ringspot potyvirus
RT   from different geographic in Thailand";
RL   Unpublished.
XX
RN   [2]
RP   1-861
RA   Chowpongpang S., Attathom S., Kositratana W.;
RT   ;
RL   Submitted (03-JUN-2005) to the EMBL/GenBank/DDBJ databases.
RL   National Center for Genetic Engineering and Biotechnology, National Science
RL   and Technology Development Agency, 113 Pahonyothin Science Park,
RL   Klongluang, Pathumtanee 12120, Thailand
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .861
FT                   /country="Thailand"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: P"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="Roi-et ROI1"
FT   gene            <1. .861
FT                   /gene="CP"
FT   CDS             <1. .861
FT                   /codon_start=1
FT                   /note="capsid protein"
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="AAY96781.1"
FT                   /translation="SKTEAVDAGLNEKLKDKEKQKEEKDKQKGKENNEASDGNDVSAST
FT                   KIGERDRDVNAGTSGTFTVPKIKSFTDKMILPRIKGKTVLNLNHLLQYNPQQIDISNTR
FT                   ATQSQFEKWYEGVRNDYRLNDNQMQVMLNGLMGWCIENGTSPDMSGVWVMMDGETQVDY
FT                   PIKPLIEHATPSFRQIMAHFSNAAEAYIAKRNATERYIPRYGIKRNLTDISLARYAFDF
FT                   YELNSKTPDRAREAHMQMKAAALRNTSRRMFGMDGSVSNKEENTERHTVEDVNRDMHSL
FT                   LGMRN"
XX
SQ   Sequence 861 BP; 303 A; 156 C; 201 G; 201 T; 0 other;

  DQ085863  Length: 861  July 12, 2005 08:41  Type: N  Check: 7526  ..

       1  tccaaaactg aagctgtgga tgctggtctt aatgagaagc tcaaagacaa
      51  agaaaaacag aaagaagaaa aagataaaca aaaaggtaaa gaaaataatg
     101  aagctagtga cggaaatgat gtgtcagcta gcacaaaaat tggagagaga
     151  gatagagatg tcaatgccgg aactagtggt actttcactg ttccaaaaat
     201  aaaatcattt actgacaaga tgattttacc aagaattaag ggaaaaactg
     251  tccttaattt aaatcatctt cttcagtata atccgcaaca aatagacatc
     301  tcaaacactc gtgccactca atctcaattc gaaaagtggt atgagggagt
     351  gaggaatgat taccgtctta atgataacca aatgcaagtg atgttaaatg
     401  gtttgatggg ttggtgcatc gaaaatggaa catccccaga catgtctggt
     451  gtttgggtga tgatggatgg ggaaacccaa gttgattacc ccatcaagcc
     501  tttgatcgaa catgcaactc cttcgttcag gcaaatcatg gctcacttca
     551  gtaacgcggc agaggcatac atcgcaaaga ggaatgctac tgaaaggtac
     601  atcccgcggt atggaatcaa gaggaatttg actgacatta gtcttgctag
     651  atatgctttc gacttctatg agttgaattc aaaaacacct gatagggctc
     701  gtgaagctca tatgcagatg aaggctgcag cgctgcgcaa cactagtcgc
     751  agaatgtttg gaatggacgg cagtgtcagt aacaaggaag aaaacacgga
     801  gagacacaca gtagaagatg tcaacagaga catgcactct ctcctgggta
     851  tgcgcaattg a