Sequence of DPV Papaya ringspot virus

Papaya ringspot virus P isolate Braco coat protein gene, partial cds.

ACC No: DQ104819

Dated: 2007-11-01 | Length: 839 | CRC: -482983306

                
ID   DQ104819; SV 1; linear; genomic RNA; STD; VRL; 839 BP.
XX
AC   DQ104819;
XX
DT   29-JUN-2006 (Rel. 88, Created)
DT   01-NOV-2007 (Rel. 93, Last updated, Version 2)
XX
DE   Papaya ringspot virus P isolate Braco coat protein gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus P
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-839
RX   PUBMED; 17668274.
RA   Chin M., Rojas Y., Moret J., Fermin G., Tennant P., Gonsalves D.;
RT   "Varying genetic diversity of Papaya ringspot virus isolates from two
RT   time-separated outbreaks in Jamaica and Venezuela";
RL   Arch. Virol. 152(11):2101-2106(2007).
XX
RN   [2]
RP   1-839
RA   Chin M., Fermin G., Gonsalves D., Ahmad M.H., Tennant P.;
RT   "Genetic variability of Papaya ringspot virus (type-P) isolates from two
RT   time-separated outbreaks in Jamaica";
RL   Unpublished.
XX
RN   [3]
RP   1-839
RA   Chin M., Fermin G., Gonsalves D., Ahmad M.H., Tennant P.;
RT   ;
RL   Submitted (22-JUN-2005) to the EMBL/GenBank/DDBJ databases.
RL   Department of Biology, Universidad de Los Andes, La Hechicera, Merida 5101,
RL   Venezuela
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .839
FT                   /organism="Papaya ringspot virus P"
FT                   /specific_host="Carica papaya"
FT                   /isolate="Braco"
FT                   /serotype="P"
FT                   /mol_type="genomic RNA"
FT                   /country="Jamaica"
FT                   /virion
FT                   /db_xref="taxon:12206"
FT   CDS             <1. .839
FT                   /codon_start=3
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q15KE9"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q15KE9"
FT                   /protein_id="AAZ94757.1"
FT                   /translation="GLNEKRKEQEKQEEKEEKQKKKEKGDASYGNDVSTSTRTGERDRD
FT                   VNVGTSGTFTVPRTKSFTDKMILPRIKGKTVLNLNHLIQYNPQQIDISNTRATQSQFEK
FT                   WYEGVRNDYGLNDNEMQIVLNGLMVWCIENGTSPDISGVWVMMDGETQVDYPIKPLIEH
FT                   ATPSFRQIMAHFSNAAEAYITKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKTP
FT                   DRAREAHMQMKAAALRNTNRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGLRN"
XX
SQ   Sequence 839 BP; 295 A; 141 C; 200 G; 203 T; 0 other;

dq104819 Length: 839  01-NOV-2007  Type: N  Check: 2698  ..

       1  ctggtttaaa tgaaaagcgt aaagaacaag agaaacaaga agaaaaagaa
      51  gaaaaacaaa aaaagaaaga aaaaggcgat gctagttacg gaaacgatgt
     101  gtcaactagc acaagaactg gagagagaga cagagatgtc aatgttggga
     151  ccagtggaac tttcactgtt ccgagaacaa aatcatttac tgataagatg
     201  attttaccta gaattaaggg aaaaactgtc cttaatttaa atcatctcat
     251  tcagtataat ccgcaacaaa ttgacatttc taacactcgc gctactcaat
     301  cacaatttga gaagtggtac gagggagtga ggaatgatta tggccttaat
     351  gataatgaga tgcaaatagt gctaaatggt ttgatggttt ggtgtatcga
     401  aaacggtaca tctccagaca tatctggtgt ctgggttatg atggatgggg
     451  aaacccaggt tgattatcca atcaagcctt taattgagca tgctactccg
     501  tcgtttaggc aaattatggc tcatttcagt aacgcggcag aagcatacat
     551  tacaaagaga aatgctactg agaggtacat gccgcggtat gggatcaaga
     601  gaaatttgac tgacattagt cttgctagat atgctttcga tttctatgag
     651  gtgaattcga aaacacctga tagggctcgc gaagctcaca tgcagatgaa
     701  agctgcagcg ctgcgaaaca ctaatcgcag aatgtttggt atggacggca
     751  gtgttagtaa caaggaagaa aacacggaga gacacacagt ggaagatgtc
     801  aatagagaca tgcactctct cctgggtttg cgcaactaa