Sequence of DPV Papaya ringspot virus

Papaya ringspot virus P isolate Caymanas coat protein gene, partial cds.

ACC No: DQ104823

Dated: 2007-11-01 | Length: 842 | CRC: 1740954152

                
ID   DQ104823; SV 1; linear; genomic RNA; STD; VRL; 842 BP.
XX
AC   DQ104823;
XX
DT   29-JUN-2006 (Rel. 88, Created)
DT   01-NOV-2007 (Rel. 93, Last updated, Version 2)
XX
DE   Papaya ringspot virus P isolate Caymanas coat protein gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus P
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-842
RX   PUBMED; 17668274.
RA   Chin M., Rojas Y., Moret J., Fermin G., Tennant P., Gonsalves D.;
RT   "Varying genetic diversity of Papaya ringspot virus isolates from two
RT   time-separated outbreaks in Jamaica and Venezuela";
RL   Arch. Virol. 152(11):2101-2106(2007).
XX
RN   [2]
RP   1-842
RA   Chin M., Fermin G., Gonsalves D., Ahmad M.H., Tennant P.;
RT   "Genetic variability of Papaya ringspot virus (type-P) isolates from two
RT   time-separated outbreaks in Jamaica";
RL   Unpublished.
XX
RN   [3]
RP   1-842
RA   Chin M., Fermin G., Gonsalves D., Ahmad M.H., Tennant P.;
RT   ;
RL   Submitted (22-JUN-2005) to the EMBL/GenBank/DDBJ databases.
RL   Department of Biology, Universidad de Los Andes, La Hechicera, Merida 5101,
RL   Venezuela
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .842
FT                   /organism="Papaya ringspot virus P"
FT                   /specific_host="Carica papaya"
FT                   /isolate="Caymanas"
FT                   /serotype="P"
FT                   /mol_type="genomic RNA"
FT                   /country="Jamaica"
FT                   /virion
FT                   /db_xref="taxon:12206"
FT   CDS             <1. .842
FT                   /codon_start=3
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q15KE5"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q15KE5"
FT                   /protein_id="AAZ94761.1"
FT                   /translation="GLNEKLKEKEKQKDKEKEKQKDKEKGDASDGNDGSTSTKTGERDR
FT                   DVNVGTSGTSTVPRIKSFTDKMVLPRIKGKTVLNLNHLLQYNPQQIDISNTRATQSQFE
FT                   KWYEGVRSDYGLNDSEMQVTLNGLMVWCIENGTSPDISGVWVMMDGETQVDYPIKPLIE
FT                   HATPSFRQIMAHFSNAAEAYTAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKT
FT                   PDRAREAHMQMKAAALRNTNRRMFGMDGSVSNNEENTERHTVEDVYIDMHSLLRLRN"
XX
SQ   Sequence 842 BP; 295 A; 147 C; 199 G; 201 T; 0 other;

dq104823 Length: 842  01-NOV-2007  Type: N  Check: 9888  ..

       1  ctggtttaaa tgaaaagctc aaagaaaaag aaaaacagaa agataaagaa
      51  aaagaaaaac aaaaagataa agaaaaagga gatgctagtg acggaaatga
     101  tggttcgact agcacaaaaa ctggagagag agatagagat gtcaatgttg
     151  ggaccagtgg aacttccact gttccgagaa ttaaatcatt cactgataag
     201  atggttctac caagaattaa gggaaaaact gtccttaatt taaatcatct
     251  tcttcagtat aatccacaac aaattgacat ttctaacact cgtgccactc
     301  agtcacaatt tgagaagtgg tacgaaggag tgaggagtga ttatggccta
     351  aatgatagtg aaatgcaagt gacgctaaat ggcttgatgg tttggtgtat
     401  cgagaatggt acatctccag acatatctgg tgtctgggtt atgatggatg
     451  gggaaaccca agttgattat ccaatcaagc ctttaattga gcacgctacc
     501  ccatcattta ggcagattat ggctcacttc agtaacgcgg cagaagcata
     551  cactgcaaag agaaatgcta ctgagaggta catgccgcgg tatggaatca
     601  agagaaattt gactgacatt agtctcgcta gatacgcttt cgatttctat
     651  gaggtgaatt cgaagacacc tgatagggct cgtgaagctc acatgcagat
     701  gaaagctgca gcgctgcgaa acactaatcg cagaatgttt ggtatggacg
     751  gcagtgttag taacaatgaa gaaaacacgg agagacacac agtggaagat
     801  gtctatatag acatgcactc tctcctgcgt ttgcgcaact ga