Sequence of DPV Chilli leaf curl virus
Chilli leaf curl virus-[Pakistan] segment DNA A, complete sequence.
ACC No: DQ114477
Dated: 2006-07-01 | Length: 2756 | CRC: 668087117
ID DQ114477; SV 1; circular; genomic DNA; STD; VRL; 2756 BP.
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AC DQ114477;
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DT 01-JUL-2006 (Rel. 88, Created)
DT 01-JUL-2006 (Rel. 88, Last updated, Version 1)
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DE Chilli leaf curl virus-[Pakistan] segment DNA A, complete sequence.
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KW .
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OS Chilli leaf curl virus-[Pakistan]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2756
RA Tsai W.S., Green S.K., Behjatnia S.A.A., Rezaian A., Iram S., Mansoor;
RT ;
RL Submitted (01-JUL-2005) to the EMBL/GenBank/DDBJ databases.
RL Virology Unit, Asian Vegetable Research and Development Center- The World
RL Vegetable Center, PO Box 42, Shanhua, Tainan, Taiwan 741, Republic of China
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FH Key Location/Qualifiers
FH
FT source 1. .2756
FT /organism="Chilli leaf curl virus-[Pakistan]"
FT /segment="DNA A"
FT /specific_host="chilli pepper"
FT /isolate="Shorkot"
FT /mol_type="genomic DNA"
FT /country="Pakistan"
FT /clone="PC10"
FT /db_xref="taxon:340896"
FT gene 147. .503
FT /gene="V2"
FT CDS 147. .503
FT /codon_start=1
FT /gene="V2"
FT /product="V2 protein"
FT /note="pre-coat protein"
FT /protein_id="AAZ77662.1"
FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL
FT ISVIRARNYVEATSRYNHFHSRFEGTPTSQLRQPICEPCHCPHCPRHQSKSMGEQAHEQ
FT KAQDVQDVPKSGCS"
FT gene 307. .1077
FT /gene="V1"
FT CDS 307. .1077
FT /codon_start=1
FT /gene="V1"
FT /product="CP"
FT /note="coat protein"
FT /protein_id="AAZ77663.1"
FT /translation="MSKRLADIIISTPVSKVRRRLNFDSPYASRATAPIVRVTKAKAWA
FT NRPMNRKPRMYRMFRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(1074. .1478)
FT /gene="C3"
FT CDS complement(1074. .1478)
FT /codon_start=1
FT /gene="C3"
FT /product="C3"
FT /note="replication enhancer protein"
FT /protein_id="AAZ77664.1"
FT /translation="MDSRTGEPITAAQAENGVFIWEIQNPLYFKIIEHQNRPFLMNQDI
FT ITVRIQFNHNLRKALGVHKCFLVYRIWMTSQPQTGRFLRVFKTQVVKYLDRLGVVSINN
FT VNRAVDHVLWNVIQHIVYVQQSYSIKFNIY"
FT gene complement(1219. .1623)
FT /gene="C2"
FT CDS complement(1219. .1623)
FT /codon_start=1
FT /gene="C2"
FT /product="C2"
FT /note="transcription activor protein"
FT /protein_id="AAZ77665.1"
FT /translation="MRPSSPSKAHSTQVPIKVQHRQAKRGIRRRRVDLDCGCSYFIALR
FT CHGYGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNRAPEPSIPHEPRHNHRPNTVQSQP
FT EESSGSAQVFSSLPNLDDFTASDWAFLEGL"
FT gene complement(1526. .2611)
FT /gene="C1"
FT CDS complement(1526. .2611)
FT /codon_start=1
FT /gene="C1"
FT /product="C1"
FT /note="replication-associated protein"
FT /protein_id="AAZ77666.1"
FT /translation="MPRQHQFQVKAKNIFLTYPKCPIPKEQILEILKSINCPSDKLFIR
FT VSQEKHHDGSLHIHALIQFKGKSQFRNPRHFDVTHPNNTTQFHPNFQGAKSSSDVKSYI
FT EKDGDYIDWGRFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYH
FT NLKSNLDRIFTPPVEVYVSPFCSSSFDQVPEELEEWRSENVVAAAARPLRPMSIVVEGA
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNTALKSWALKNATFITLQGPL
FT YSGSNQSAAQASQEGNQATTR"
FT gene complement(2197. .2454)
FT /gene="C4"
FT CDS complement(2197. .2454)
FT /codon_start=1
FT /gene="C4"
FT /product="C4"
FT /note="involved in symptom expression"
FT /protein_id="AAZ77667.1"
FT /translation="MGACISMPSSNSKVNPSSETLDISMSLTLITPPNSTQTSRELSPA
FT LMSSPTSRRTVITSTGVGFRSMDDLLEEVNRQLMMLPQRP"
XX
SQ Sequence 2756 BP; 741 A; 575 C; 627 G; 813 T; 0 other;
dq114477 Length: 2756 01-JUL-2006 Type: N Check: 7129 ..
1 accggatggc cgcgattttt ttaccatggt cccaccacac gcactaacgg
51 acatttacac atggaccaat taaaacatct cctcaaagcc taattgtttc
101 gtggtcccct atttaaactt gggctccaag tagtgcactc ataccaatgt
151 gggatccatt agtaaacgag tttcccgaaa ccgttcacgg ttttaggtgt
201 atgctagcag tgaaatatct gcagctagta gaaaagacgt attcgcccga
251 tactcttggg tacgatttaa ttagggattt aatttcagtc atcagggcta
301 gaaattatgt cgaagcgact agcagatata atcatttcca ctcccgtttc
351 gaaggtacgc cgacgtctca acttcgacag cccatatgcg agccgtgcca
401 ctgcccccat tgtccgcgtc accaaagcaa aagcatgggc gaacaggccc
451 atgaacagaa agcccaggat gtacaggatg ttccgaagtc cggatgttcc
501 tagaggatgt gaaggcccat gtaaggtcca gtcctttgag tctagacatg
551 acattcaaca tataggtaaa gttatgtgta tcagtgatgt tactcgtgga
601 actgggttga cccatcgagt gggtaagagg ttttgtgtta aatccgttta
651 tgtcttgggt aagatatgga tggatgaaaa tattaagacc aagaatcaca
701 cgaacagtgt gatgtttttt ctagttcggg atcgtagacc tgtggataaa
751 cctcaagact ttggcgaggt gtttaacatg tttgataatg agcccagtac
801 ggctactgtg aagaatgttc atcgtgatag gtatcaagtt cttcggaaat
851 ggcatgcaac agttaccggt ggacagtatg cgtctaagga acaagctctt
901 gtgaagaagt ttgtgagggt caataattat gttgtgtata accagcaaga
951 agctgggaag tatgaaaatc attctgagaa tgcgttaatg ttgtatatgg
1001 cgtgtactca tgcctctaac cctgtgtatg ctactttgaa gatacggatc
1051 tatttttatg attccgtaac aaattaataa atgttaaact ttattgaata
1101 agattgttgt acatatacaa tgtgttgtat tacattccat aatacatgat
1151 caaccgcacg atttacatta ttaatactga caactcctaa acgatctaaa
1201 tatttaacaa cctgagtctt aaagaccctc aagaaacgcc cagtctgagg
1251 ctgtgaagtc atccagattc ggtagactag aaaacacttg tgcactccca
1301 gagctttcct caggttgtga ttgaactgta ttcggacggt gattatgtct
1351 tggttcatga ggaatggacg gttctggtgc tctattatct tgaaatacag
1401 gggattttga atctcccaga taaacacgcc attctctgct tgagctgcag
1451 tgatgggttc ccctgtgcgt gaatccatag ccgtggcagc gtaatgctat
1501 gaaatatgaa cagccgcagt ctaggtcaac gcgtcgtcgc ctgattcccc
1551 tcttggcttg cctgtgctgc actttgattg gaacctgagt agagtgggcc
1601 ttggagggtg atgaaggtcg cattctttaa agcccaactt ttcagcgcag
1651 tattcttctc ttcatccaag aactctttat agctagagtt gggtcctgga
1701 ttgcagagga agatagcggg aattccacct ttaatttgaa ctggctttcc
1751 gtatttcgta ttgctttgcc agtccctttg ggcccccatg aattccttaa
1801 agtgctttag ataatgcgga tcaacgtcat caatgacgtt gtaccatgcg
1851 tcgttgctgt acaccttcgg gctaaggtct agatgaccgc acaaataatt
1901 gtgtgggccc aaagacctag cccacatggt ctttccagtt ctagaagcac
1951 cctccaccac aatactcatg ggtctcaacg gccgcgcagc ggcagcaacc
2001 acattctccg acctccattc ctcaagttct tccggaactt gatcaaaaga
2051 agaagaacaa aaaggagaaa cataaacctc caccggaggt gtaaaaatcc
2101 tatctaaatt actttttaga ttatgatatt gaaaaataaa atcttttggg
2151 agcttttccc ttattattgc taacgcagct tcagccgaac ctgcatttaa
2201 ggcctctgcg gcagcatcat tagctgtctg ttgacctcct ctagcagatc
2251 gtccatcgat ctgaaaccga ccccagtcga tgtaatcacc gtccttctcg
2301 atgtaggact tgacatcaga gctggactta gctccctgga agtttgggtg
2351 gaattgggtg gtgttattag ggtgagtgac atcgaaatgt ctagggtttc
2401 ggaactggga tttacctttg aattggatga gggcatggat atgcaagctc
2451 ccatcgtggt gtttttcctg tgatactctg ataaataatt tatcagaagg
2501 acaatttata gatttgagaa tttctagtat ttgttctttg ggtattgggc
2551 attttggata agttaggaag atattttttg ccttaacttg gaattggtgt
2601 tggcgtggca tattgtattg ggtgctcttc aaaaccctat ggaatggggt
2651 gctttgggtg cctatttata ccgagctccc aaatggcatt gatgtaattt
2701 cgtggaaaat tccaaaattt tcccgctcga aaaatcgcgg ccatccgtat
2751 aatatt