Sequence of DPV Cotton leaf curl Gezira betasatellite

Tomato yellow leaf curl Mali virus-associated DNA beta, complete genome.

ACC No: DQ136001

Dated: 2009-01-13 | Length: 1346 | CRC: -1933571053

                
ID   DQ136001; SV 2; circular; genomic DNA; STD; VRL; 1346 BP.
XX
AC   DQ136001;
XX
DT   13-AUG-2005 (Rel. 84, Created)
DT   13-JAN-2009 (Rel. 99, Last updated, Version 3)
XX
DE   Tomato yellow leaf curl Mali virus-associated DNA beta, complete genome.
XX
KW   .
XX
OS   Tomato yellow leaf curl Mali virus-associated DNA beta
OC   Viruses; Satellites; Satellite Nucleic Acids;
OC   Single stranded DNA satellites;
OC   Begomovirus-associated DNA beta-like sequences.
XX
RN   [1]
RP   1-1346
RA   Hagen C., Gilbertson R.L.;
RT   "Functional analysis of BetaC1, from the geminivirus associated DNA-beta
RT   satellite";
RL   Unpublished.
XX
RN   [2]
RP   1-1346
RA   Hagen C., Gilbertson R.L.;
RT   ;
RL   Submitted (19-JUL-2005) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, UC Davis, 1 Shields Avenue, Davis, CA 95616, USA
XX
RN   [3]
RC   Sequence update by submitter
RP   1-1346
RA   Hagen C., Gilbertson R.L.;
RT   ;
RL   Submitted (12-JAN-2009) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, UC Davis, 1 Shields Avenue, Davis, CA 95616, USA
XX
CC   On Jan 12, 2009 this sequence version replaced gi:71905243.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1346
FT                   /organism="Tomato yellow leaf curl Mali virus-associated
FT                   DNA beta"
FT                   /mol_type="genomic DNA"
FT                   /country="Mali"
FT                   /db_xref="taxon:341685"
FT   CDS             complement(195. .548)
FT                   /codon_start=1
FT                   /product="putative C1 protein"
FT                   /db_xref="UniProtKB/TrEMBL:Q45FY9"
FT                   /protein_id="AAZ52662.1"
FT                   /translation="MTITFRSTKGVHFRVDVFLKDDHIDCRIEVTATKEAYLRKSTFII
FT                   PYNFADVFIPFDFNGSEEEIMNGLKNMFKDTTHQMIKTEELVEVVDMIMAENLNILGME
FT                   LINHYRIINKSSV"
XX
SQ   Sequence 1346 BP; 423 A; 261 C; 253 G; 409 T; 0 other;

dq136001 Length: 1346  13-JAN-2009  Type: N  Check: 3569  ..

       1  accgtgggcg agcggtgcct ggactgaaat tggtgggtcc cagctattgg
      51  gaatggatga aatcttggga aattgggcta gatccaaccc aattgttata
     101  tataattaat ttatgattaa attaatactg ctttaaatga tattataaaa
     151  cagataagac ataaaatatt attcattaca tataatttaa aacattacac
     201  cgatgattta tttatgatgc ggtaatgatt tatgagttcc atgcctaaaa
     251  tgttcaggtt ctcagccatt atcatatcca ccacttcgac taactcttcc
     301  gtcttgatca tctggtgagt ggtgtctttg aacatattct ttaacccatt
     351  cattatttcc tcctcagagc cgttaaagtc gaatgggatg aagacatcag
     401  cgaagttgta tggtatgata aacgttgatt tcctcagata tgcctccttt
     451  gttgccgtca cctctatcct gcagtctata tgatcgtctt tgaggaagac
     501  atcgactctg aagtggactc ccttggtgct cctgaatgtg atagtcattt
     551  tttattatgt ttcgtgttga tcatcaacag gaaatatata gatgattcat
     601  agaaaatatc ttatgagtat atggatttaa atggaacacg tatatcttgt
     651  atcatccata catattccgt catccattac gtcatacagg ctcatacgat
     701  gtaaagcatc gtaagagata aaaaataaag aaaagaaaaa ataaagaaga
     751  aataattata atttagaaag aaaccaggga gcgcagcgaa aaaaaaaacc
     801  ccgaacagac aaataaaatt aaatagaaaa agaaaaatgt acaattcctt
     851  ctcagaagga cttggttgaa aaaaaaagaa acacattaat tccgtactat
     901  aatactatgt cgctttgttt gaataccgta cttaaagcag tattttaaat
     951  ggtatatgaa atctccgtcc ctggatgttt agtgggtgat gactggatat
    1001  tacggtgtca ctgtttaccg ttccgtttta tctttacccc gttccgttat
    1051  tttaccccaa tccgttattg taccccgata tatcggtgct caattggtgc
    1101  taagatccgt acacatatat ccttttgacg aaaacaccct caaaaagctg
    1151  agataagagg cgcgtgcaat tgcgctgaaa aagttaacat tctctctcct
    1201  atttccggtg aaactatcat ttccggtggt tgccggcctc aattcacgac
    1251  acgcgcggcg gtgtgtaccc ctgggagggt agaaaccact acgctacgca
    1301  gcagccttag ctacgccgga gcttagctcg cccacgttct aatatt