Sequence of DPV Raven circovirus

Raven circovirus isolate 4-1131, complete genome.

ACC No: DQ146997

Dated: 2006-08-25 | Length: 1898 | CRC: -95359595

                
ID   DQ146997; SV 1; circular; genomic DNA; STD; VRL; 1898 BP.
XX
AC   DQ146997;
XX
DT   25-AUG-2006 (Rel. 88, Created)
DT   25-AUG-2006 (Rel. 88, Last updated, Version 1)
XX
DE   Raven circovirus isolate 4-1131, complete genome.
XX
KW   .
XX
OS   Raven circovirus
OC   Viruses; ssDNA viruses; Circoviridae; Circovirus; unclassified Circovirus.
XX
RN   [1]
RP   1-1898
RX   DOI; 10.1080/03079450600597345.
RX   PUBMED; 16595298.
RA   Stewart M.E., Perry R., Raidal S.R.;
RT   "Identification of a novel circovirus in Australian ravens (Corvus
RT   coronoides) with feather disease";
RL   Avian Pathol. 35(2):86-92(2006).
XX
RN   [2]
RP   1-1898
RA   Stewart M.E., Perry R., Raidal S.R.;
RT   ;
RL   Submitted (28-JUL-2005) to the EMBL/GenBank/DDBJ databases.
RL   School of Veterinary and Biomedical Science, Murdoch University, South St.,
RL   Murdoch, WA 6150, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1898
FT                   /organism="Raven circovirus"
FT                   /specific_host="Corvus coronoides"
FT                   /isolate="4-1131"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /db_xref="taxon:345250"
FT   stem_loop       join(1871. .1898,1. .21)
FT   rep_origin      join(1892. .1898,1. .2)
FT   CDS             36. .911
FT                   /codon_start=1
FT                   /product="rep protein"
FT                   /note="ORFV1; putative replicase"
FT                   /protein_id="ABA53822.1"
FT                   /translation="MPPQKREAAAKRWCFTLNNYTDEEVSAVKAWNASEYHYAVVGREK
FT                   GENGTPHLQGYIHLKKKARLSTLKKLLSRAHWEKARGSDSDNEAYCTKDGDVILTLGMP
FT                   VEGNRSDLSGAVAAVKAGSRMVDIAREFSEVYVKYGRGLRELALLIGQKPRDFKTEFIV
FT                   VTGPSGVGKSRYANEYPGTKFYKMKGDWWDGYSNEDVVVIDDFYGWIPFCELLRLTDRY
FT                   PHKVPVKGSYVEFTSKVIIVTSNTHPDSWYNEEKCYLPALFRRINKWLTWNAIRFEDAP
FT                   DCMKKYPINY"
FT   polyA_signal    1077. .1082
FT                   /note="putative"
FT   polyA_signal    complement(1115. .1120)
FT                   /note="putative"
FT   CDS             complement(1116. .>1847)
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="start site undetermined; ORFC1; putative structural
FT                   protein"
FT                   /protein_id="ABA53823.1"
FT                   /translation="SFIQVARRRRQTQAIRRRWRRRHWRRRRLTNRRGHRTNRVYRFKF
FT                   VRMYRQECAGSGDTTLKWATDGLNIMLDDFLDWGTINWRLPFEDYRIRLAKFEMRPLNE
FT                   NWGSWHGIGHNVPIQDNHLEDFFKKPGLETDPLANWDGARQWDLRKGFKRLFRPRPQIS
FT                   ITDTDAGNVTAALWLTNPRSAWIPLMKKGDQNLPSSGSRVKHYGLAISWPQPHDAILFH
FT                   AKVTIYVEFRQMNLTHLANPK"
XX
SQ   Sequence 1898 BP; 430 A; 438 C; 544 G; 486 T; 0 other;

dq146997 Length: 1898  25-AUG-2006  Type: N  Check: 267  ..

       1  accggccact tggagccacg gagccccttg cagctatgcc tccgcaaaag
      51  agggaagcag ccgctaagag gtggtgcttc acgctgaata actacaccga
     101  tgaagaggtg tccgccgtga aggcgtggaa cgcgagtgag taccattacg
     151  ctgtcgttgg acgcgaaaag ggggagaatg gtacgccgca tttgcagggc
     201  tacattcatc taaagaagaa ggctcggcta agcactctga aaaaattact
     251  tagccgtgcc cattgggaga aagctcgcgg ttcggacagc gacaacgagg
     301  cgtactgtac gaaagatggg gacgtgatac ttaccctggg catgccggtg
     351  gaagggaacc gtagcgatct ctccggagct gttgccgccg tgaaagccgg
     401  aagtcgaatg gtggatatcg cgcgagagtt cagtgaagtc tacgtcaagt
     451  atgggcgtgg cttacgtgaa ctggcgcttc tgattggaca gaaaccgcga
     501  gatttcaaaa ccgaatttat cgttgtcacc ggtccgtcgg gcgtgggcaa
     551  gagccgttat gctaatgagt atcctggcac taagttttat aagatgaaag
     601  gggactggtg ggacggctac tctaacgagg atgttgtcgt tattgacgac
     651  ttttatggat ggataccttt ttgtgagtta ctgcgtctca ctgataggta
     701  tccacataag gttcctgtga aaggatcgta tgtggagttt acgtcgaagg
     751  tcatcatagt gaccagcaat acgcaccccg actcgtggta caatgaagag
     801  aagtgctatc tacccgcgtt gtttcggcgg ataaataagt ggctgacgtg
     851  gaatgccatc cggttcgagg atgcaccgga ttgtatgaag aagtacccta
     901  taaactattg atttcgcccc ctccctcata gtgcctttcg aggaaagagc
     951  aatcgcggcc agccaaggcg gccgcgttca cgggtacttc gcgagcgcac
    1001  cgtcgcgagc gaagttccct agtgaagttc cccgaggaaa acacttgaga
    1051  tgaggcgatt tataattttt acacttaata aataaagaca ggaaacagta
    1101  ttgtgtgtct gtactttatt tagggtttgc gaggtgggtt aggttcattt
    1151  gtctgaactc tacatatatc gtcacttttg catggaatag tatagcatcg
    1201  tggggctggg gccaactgat ggcgaggccg tagtgcttta ctctagagcc
    1251  cgagctgggt aagttttggt ctcctttctt catcagaggt atccatgcgg
    1301  atctggggtt ggttagccat agcgctgcag taacgtttcc cgcgtcggtg
    1351  tccgtaatgg aaatttgggg tcggggtcgg aaaagacgct tgaatccttt
    1401  gcggaggtcc cactgtctgg cgccgtccca gtttgctagc gggtctgtct
    1451  ccaggcctgg cttcttgaag aagtcttcaa ggtggttgtc ttgaatgggc
    1501  acattgtgcc ctataccatg ccatgatccc cagttctcgt ttagtggacg
    1551  catttcgaat tttgccagcc ggatcctgta gtcttcgaat ggtagcctcc
    1601  aattaattgt tccccagtcg aggaagtcgt ccagcattat gttgaggccg
    1651  tcggtagccc atttcagggt agtgtcacct gagccggcgc attcttgtct
    1701  gtacatgcgg acaaacttga atcggtatac tctgttagtt ctgtgaccac
    1751  gcctattggt gagtctgcgt ctgcgccagt gacgtcgtcg ccatcgccgt
    1801  ctaatcgcct gtgtctgtcg gcgtctccta gcaacctgta tgaaagagcc
    1851  aatcacgagc tgtcacgtaa ccgtggctcc aagtggccgt tgagtatt