Sequence of DPV Raven circovirus
Raven circovirus isolate 4-1131, complete genome.
ACC No: DQ146997
Dated: 2006-08-25 | Length: 1898 | CRC: -95359595
ID DQ146997; SV 1; circular; genomic DNA; STD; VRL; 1898 BP. XX AC DQ146997; XX DT 25-AUG-2006 (Rel. 88, Created) DT 25-AUG-2006 (Rel. 88, Last updated, Version 1) XX DE Raven circovirus isolate 4-1131, complete genome. XX KW . XX OS Raven circovirus OC Viruses; ssDNA viruses; Circoviridae; Circovirus; unclassified Circovirus. XX RN [1] RP 1-1898 RX DOI; 10.1080/03079450600597345. RX PUBMED; 16595298. RA Stewart M.E., Perry R., Raidal S.R.; RT "Identification of a novel circovirus in Australian ravens (Corvus RT coronoides) with feather disease"; RL Avian Pathol. 35(2):86-92(2006). XX RN [2] RP 1-1898 RA Stewart M.E., Perry R., Raidal S.R.; RT ; RL Submitted (28-JUL-2005) to the EMBL/GenBank/DDBJ databases. RL School of Veterinary and Biomedical Science, Murdoch University, South St., RL Murdoch, WA 6150, Australia XX FH Key Location/Qualifiers FH FT source 1. .1898 FT /organism="Raven circovirus" FT /specific_host="Corvus coronoides" FT /isolate="4-1131" FT /mol_type="genomic DNA" FT /country="Australia" FT /db_xref="taxon:345250" FT stem_loop join(1871. .1898,1. .21) FT rep_origin join(1892. .1898,1. .2) FT CDS 36. .911 FT /codon_start=1 FT /product="rep protein" FT /note="ORFV1; putative replicase" FT /protein_id="ABA53822.1" FT /translation="MPPQKREAAAKRWCFTLNNYTDEEVSAVKAWNASEYHYAVVGREK FT GENGTPHLQGYIHLKKKARLSTLKKLLSRAHWEKARGSDSDNEAYCTKDGDVILTLGMP FT VEGNRSDLSGAVAAVKAGSRMVDIAREFSEVYVKYGRGLRELALLIGQKPRDFKTEFIV FT VTGPSGVGKSRYANEYPGTKFYKMKGDWWDGYSNEDVVVIDDFYGWIPFCELLRLTDRY FT PHKVPVKGSYVEFTSKVIIVTSNTHPDSWYNEEKCYLPALFRRINKWLTWNAIRFEDAP FT DCMKKYPINY" FT polyA_signal 1077. .1082 FT /note="putative" FT polyA_signal complement(1115. .1120) FT /note="putative" FT CDS complement(1116. .>1847) FT /codon_start=1 FT /product="capsid protein" FT /note="start site undetermined; ORFC1; putative structural FT protein" FT /protein_id="ABA53823.1" FT /translation="SFIQVARRRRQTQAIRRRWRRRHWRRRRLTNRRGHRTNRVYRFKF FT VRMYRQECAGSGDTTLKWATDGLNIMLDDFLDWGTINWRLPFEDYRIRLAKFEMRPLNE FT NWGSWHGIGHNVPIQDNHLEDFFKKPGLETDPLANWDGARQWDLRKGFKRLFRPRPQIS FT ITDTDAGNVTAALWLTNPRSAWIPLMKKGDQNLPSSGSRVKHYGLAISWPQPHDAILFH FT AKVTIYVEFRQMNLTHLANPK" XX SQ Sequence 1898 BP; 430 A; 438 C; 544 G; 486 T; 0 other; dq146997 Length: 1898 25-AUG-2006 Type: N Check: 267 .. 1 accggccact tggagccacg gagccccttg cagctatgcc tccgcaaaag 51 agggaagcag ccgctaagag gtggtgcttc acgctgaata actacaccga 101 tgaagaggtg tccgccgtga aggcgtggaa cgcgagtgag taccattacg 151 ctgtcgttgg acgcgaaaag ggggagaatg gtacgccgca tttgcagggc 201 tacattcatc taaagaagaa ggctcggcta agcactctga aaaaattact 251 tagccgtgcc cattgggaga aagctcgcgg ttcggacagc gacaacgagg 301 cgtactgtac gaaagatggg gacgtgatac ttaccctggg catgccggtg 351 gaagggaacc gtagcgatct ctccggagct gttgccgccg tgaaagccgg 401 aagtcgaatg gtggatatcg cgcgagagtt cagtgaagtc tacgtcaagt 451 atgggcgtgg cttacgtgaa ctggcgcttc tgattggaca gaaaccgcga 501 gatttcaaaa ccgaatttat cgttgtcacc ggtccgtcgg gcgtgggcaa 551 gagccgttat gctaatgagt atcctggcac taagttttat aagatgaaag 601 gggactggtg ggacggctac tctaacgagg atgttgtcgt tattgacgac 651 ttttatggat ggataccttt ttgtgagtta ctgcgtctca ctgataggta 701 tccacataag gttcctgtga aaggatcgta tgtggagttt acgtcgaagg 751 tcatcatagt gaccagcaat acgcaccccg actcgtggta caatgaagag 801 aagtgctatc tacccgcgtt gtttcggcgg ataaataagt ggctgacgtg 851 gaatgccatc cggttcgagg atgcaccgga ttgtatgaag aagtacccta 901 taaactattg atttcgcccc ctccctcata gtgcctttcg aggaaagagc 951 aatcgcggcc agccaaggcg gccgcgttca cgggtacttc gcgagcgcac 1001 cgtcgcgagc gaagttccct agtgaagttc cccgaggaaa acacttgaga 1051 tgaggcgatt tataattttt acacttaata aataaagaca ggaaacagta 1101 ttgtgtgtct gtactttatt tagggtttgc gaggtgggtt aggttcattt 1151 gtctgaactc tacatatatc gtcacttttg catggaatag tatagcatcg 1201 tggggctggg gccaactgat ggcgaggccg tagtgcttta ctctagagcc 1251 cgagctgggt aagttttggt ctcctttctt catcagaggt atccatgcgg 1301 atctggggtt ggttagccat agcgctgcag taacgtttcc cgcgtcggtg 1351 tccgtaatgg aaatttgggg tcggggtcgg aaaagacgct tgaatccttt 1401 gcggaggtcc cactgtctgg cgccgtccca gtttgctagc gggtctgtct 1451 ccaggcctgg cttcttgaag aagtcttcaa ggtggttgtc ttgaatgggc 1501 acattgtgcc ctataccatg ccatgatccc cagttctcgt ttagtggacg 1551 catttcgaat tttgccagcc ggatcctgta gtcttcgaat ggtagcctcc 1601 aattaattgt tccccagtcg aggaagtcgt ccagcattat gttgaggccg 1651 tcggtagccc atttcagggt agtgtcacct gagccggcgc attcttgtct 1701 gtacatgcgg acaaacttga atcggtatac tctgttagtt ctgtgaccac 1751 gcctattggt gagtctgcgt ctgcgccagt gacgtcgtcg ccatcgccgt 1801 ctaatcgcct gtgtctgtcg gcgtctccta gcaacctgta tgaaagagcc 1851 aatcacgagc tgtcacgtaa ccgtggctcc aagtggccgt tgagtatt