Sequence of DPV Starling circovirus

Starling circovirus, complete genome.

ACC No: DQ172906

Dated: 2006-05-04 | Length: 2063 | CRC: 749652105

                
ID   DQ172906; SV 1; circular; genomic DNA; STD; VRL; 2063 BP.
XX
AC   DQ172906;
XX
DT   04-MAY-2006 (Rel. 87, Created)
DT   04-MAY-2006 (Rel. 87, Last updated, Version 1)
XX
DE   Starling circovirus, complete genome.
XX
KW   .
XX
OS   Starling circovirus
OC   Viruses; ssDNA viruses; Circoviridae; Circovirus; unclassified Circovirus.
XX
RN   [1]
RP   1-2063
RX   DOI; 10.1099/vir.0.81561-0.
RX   PUBMED; 16603520.
RA   Johne R., Fernandez-de-Luco D., Hofle U., Muller H.;
RT   "Genome of a novel circovirus of starlings, amplified by multiply primed
RT   rolling-circle amplification";
RL   J. Gen. Virol. 87(Pt 5):1189-1195(2006).
XX
RN   [2]
RP   1-2063
RA   Johne R., Muller H.;
RT   ;
RL   Submitted (17-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   Faculty of Veterinary Medicine, University of Leipzig, Institute for
RL   Virology, An den Tierkliniken 29, Leipzig 04103, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2063
FT                   /organism="Starling circovirus"
FT                   /specific_host="European Starling (Sturnus vulgaris)"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:349370"
FT   CDS             37. .906
FT                   /codon_start=1
FT                   /product="putative replication-associated protein"
FT                   /protein_id="ABB59613.1"
FT                   /translation="MAVRGSAAKRWCFTLNNPTEEEIAAVKAWQHSEYHYAIVGKEKGE
FT                   QGTPHLQGFIHLKKKVRLTSLKKVLQRAHWEKARGSDEDNEKYCSKEGDVILTIGIPVK
FT                   GNRSDLAGAVAAVKAGRGMSEIAREFSETYVRYGRGLRDLALLIGQKQRDFKTEVTVLT
FT                   GPSGVGKSRWANEQVGTKFYKMKGDWWDGYCNEDIVIIDDFYGWIPFCELLRLCDRYPH
FT                   KVPVKGSYVEFNSKQIIITSNTPPDSWYNEDKCYVQALFRRINRWLVWDATQFVDAPEV
FT                   MKKYPINY"
FT   CDS             834. .1154
FT                   /codon_start=1
FT                   /product="unknown"
FT                   /note="ORF3"
FT                   /protein_id="ABB59614.1"
FT                   /translation="MACVGCHPVRGCTGSDEEVSDQLLTGNGNDVTGNDDTRDLVIIKN
FT                   KTGGPGGSPSPPRSGGLIRALPPRCRGPLAVHDREGAVGDRSVSPGPKARVYTRPRGKK
FT                   NK"
FT   CDS             complement(1190. .2020)
FT                   /codon_start=1
FT                   /product="putative capsid protein"
FT                   /protein_id="ABB59615.1"
FT                   /translation="MLLSRRRWRRGLRPRYRRRHYRRRRRTRRLPRNRRGHRANRVYYF
FT                   RLRHSVKVTLQKDEGGSFKYGTDVFTFTLEDVLNPTGGDSLKLPFEDYKIVLVKVEMRP
FT                   LGENSTEWKGLGHTVPITDARLMNFVKKKGLADDPLANWDGALKWDQRKGFKRLVRPKP
FT                   QLVITDLSTANETAALWLNSQKAFWIPLQLNAAQIKPKKVKHYGIAFSYLQPSPDEWAY
FT                   QANITFYMKFRQFAWTALSDPPTPNVMADLPPHMELMNVIEDDEGPDSFPEFFE"
XX
SQ   Sequence 2063 BP; 548 A; 500 C; 546 G; 469 T; 0 other;

dq172906 Length: 2063  04-MAY-2006  Type: N  Check: 2136  ..

       1  accggccact tggagccacg gagccatcgt ctcgaaatgg ctgtaagggg
      51  ctctgccgct aagagatggt gcttcaccct caacaacccc acagaggaag
     101  agattgcagc agtcaaagcc tggcagcaca gtgagtacca ctatgccatt
     151  gtgggaaaag aaaaaggaga gcaagggacc ccccacctcc aaggctttat
     201  ccacttaaag aaaaaagtga gactcacaag ccttaaaaaa gtgctgcaaa
     251  gagctcactg ggagaaggcc cgaggcagtg atgaagataa tgagaaatac
     301  tgcagtaaag agggggacgt gatactcacg atcggcatac cagtgaaggg
     351  aaaccggagc gaccttgccg gagctgttgc cgctgtgaaa gccggaagag
     401  gaatgagtga gatcgcgcga gagttcagtg agacttacgt cagatatggg
     451  cggggcctcc gggatctagc ccttctgatt ggtcagaagc aacgtgactt
     501  caagacggaa gttaccgtgc ttactggccc ttcaggtgtg ggcaagtccc
     551  ggtgggccaa tgaacaagtt gggacaaagt tctataaaat gaaaggtgat
     601  tggtgggatg gatactgcaa tgaggatata gtaatcattg atgatttcta
     651  tgggtggata cccttctgtg agctgctgag actgtgtgat cgatacccac
     701  ataaggtgcc cgtcaagggg tcctatgtgg agttcaacag caagcagatc
     751  atcattacca gtaacacccc accggactcg tggtataatg aagacaagtg
     801  ttatgtgcaa gctctgttta gacgtataaa cagatggctt gtgtgggatg
     851  ccacccagtt cgtggatgca ccggaagtga tgaagaagta tccgatcaac
     901  tactgaccgg aaacggaaat gacgtcaccg gaaatgacga cactcgagat
     951  cttgttatta taaaaaataa aacggggggt ccggggggga gccccagccc
    1001  cccgcgaagc ggggggctga tcagggcgct ccccccccgg tgtcgtggac
    1051  ctttagccgt ccacgaccgc gagggcgccg taggcgaccg aagcgtgtcc
    1101  cccgggccga aggcccgggt ctacactcga cctcgaggaa aaaaaaataa
    1151  ataaataata caccggaaac ggaaatgacg tcacttcctt tattcaaaga
    1201  attctgggaa agagtcggga ccttcatcgt cctcaatgac attcatgagt
    1251  tccatgtggg gtgggaggtc ggccattaca ttgggggttg gggggtcact
    1301  cagagcagtc catgcaaact gcctgaattt catatagaag gttatattgg
    1351  cctggtaagc ccactcatct ggtgatggct gcaggtagct gaaagctatc
    1401  ccgtagtgtt tcactttttt gggtttaatc tgggcagcat tcaactgcag
    1451  ggggatccaa aatgccttct ggctgtttaa ccatagagca gccgtttcat
    1501  tagcagtaga taggtcagta atcaccagtt gaggtttagg ccttaccagc
    1551  ctcttaaacc ccttcctctg atcccatttc agggccccat cccaattagc
    1601  tagggggtcg tcagccagcc cctttttctt aacaaaattc ataagtctgg
    1651  catcagtgat aggcactgta tgccctaacc ccttccactc agtagagttc
    1701  tcccctaggg gtctcatctc gacctttaca agaacaatct tatagtcctc
    1751  aaaaggtaat ttgagactat cacccccagt ggggttaagt acgtcttcaa
    1801  gagtaaaagt aaagacatca gtcccatatt taaaagagcc tccctcgtcc
    1851  ttttgaagag tgactttgac agagtgccga agtctaaagt aatagacacg
    1901  gttggctctg tgccctcttc tgttcctcgg caaccgcctg gtccgtctcc
    1951  gcctcctgta gtgacgtctc cgataacggg gtcgaagtcc gcgtctccac
    2001  ctccgtctcg atagcaacat ggttaataat taaccagtgg ctccaagtgg
    2051  ccgtttcagt att