Sequence of DPV Starling circovirus
Starling circovirus, complete genome.
ACC No: DQ172906
Dated: 2006-05-04 | Length: 2063 | CRC: 749652105
ID DQ172906; SV 1; circular; genomic DNA; STD; VRL; 2063 BP. XX AC DQ172906; XX DT 04-MAY-2006 (Rel. 87, Created) DT 04-MAY-2006 (Rel. 87, Last updated, Version 1) XX DE Starling circovirus, complete genome. XX KW . XX OS Starling circovirus OC Viruses; ssDNA viruses; Circoviridae; Circovirus; unclassified Circovirus. XX RN [1] RP 1-2063 RX DOI; 10.1099/vir.0.81561-0. RX PUBMED; 16603520. RA Johne R., Fernandez-de-Luco D., Hofle U., Muller H.; RT "Genome of a novel circovirus of starlings, amplified by multiply primed RT rolling-circle amplification"; RL J. Gen. Virol. 87(Pt 5):1189-1195(2006). XX RN [2] RP 1-2063 RA Johne R., Muller H.; RT ; RL Submitted (17-AUG-2005) to the EMBL/GenBank/DDBJ databases. RL Faculty of Veterinary Medicine, University of Leipzig, Institute for RL Virology, An den Tierkliniken 29, Leipzig 04103, Germany XX FH Key Location/Qualifiers FH FT source 1. .2063 FT /organism="Starling circovirus" FT /specific_host="European Starling (Sturnus vulgaris)" FT /mol_type="genomic DNA" FT /db_xref="taxon:349370" FT CDS 37. .906 FT /codon_start=1 FT /product="putative replication-associated protein" FT /protein_id="ABB59613.1" FT /translation="MAVRGSAAKRWCFTLNNPTEEEIAAVKAWQHSEYHYAIVGKEKGE FT QGTPHLQGFIHLKKKVRLTSLKKVLQRAHWEKARGSDEDNEKYCSKEGDVILTIGIPVK FT GNRSDLAGAVAAVKAGRGMSEIAREFSETYVRYGRGLRDLALLIGQKQRDFKTEVTVLT FT GPSGVGKSRWANEQVGTKFYKMKGDWWDGYCNEDIVIIDDFYGWIPFCELLRLCDRYPH FT KVPVKGSYVEFNSKQIIITSNTPPDSWYNEDKCYVQALFRRINRWLVWDATQFVDAPEV FT MKKYPINY" FT CDS 834. .1154 FT /codon_start=1 FT /product="unknown" FT /note="ORF3" FT /protein_id="ABB59614.1" FT /translation="MACVGCHPVRGCTGSDEEVSDQLLTGNGNDVTGNDDTRDLVIIKN FT KTGGPGGSPSPPRSGGLIRALPPRCRGPLAVHDREGAVGDRSVSPGPKARVYTRPRGKK FT NK" FT CDS complement(1190. .2020) FT /codon_start=1 FT /product="putative capsid protein" FT /protein_id="ABB59615.1" FT /translation="MLLSRRRWRRGLRPRYRRRHYRRRRRTRRLPRNRRGHRANRVYYF FT RLRHSVKVTLQKDEGGSFKYGTDVFTFTLEDVLNPTGGDSLKLPFEDYKIVLVKVEMRP FT LGENSTEWKGLGHTVPITDARLMNFVKKKGLADDPLANWDGALKWDQRKGFKRLVRPKP FT QLVITDLSTANETAALWLNSQKAFWIPLQLNAAQIKPKKVKHYGIAFSYLQPSPDEWAY FT QANITFYMKFRQFAWTALSDPPTPNVMADLPPHMELMNVIEDDEGPDSFPEFFE" XX SQ Sequence 2063 BP; 548 A; 500 C; 546 G; 469 T; 0 other; dq172906 Length: 2063 04-MAY-2006 Type: N Check: 2136 .. 1 accggccact tggagccacg gagccatcgt ctcgaaatgg ctgtaagggg 51 ctctgccgct aagagatggt gcttcaccct caacaacccc acagaggaag 101 agattgcagc agtcaaagcc tggcagcaca gtgagtacca ctatgccatt 151 gtgggaaaag aaaaaggaga gcaagggacc ccccacctcc aaggctttat 201 ccacttaaag aaaaaagtga gactcacaag ccttaaaaaa gtgctgcaaa 251 gagctcactg ggagaaggcc cgaggcagtg atgaagataa tgagaaatac 301 tgcagtaaag agggggacgt gatactcacg atcggcatac cagtgaaggg 351 aaaccggagc gaccttgccg gagctgttgc cgctgtgaaa gccggaagag 401 gaatgagtga gatcgcgcga gagttcagtg agacttacgt cagatatggg 451 cggggcctcc gggatctagc ccttctgatt ggtcagaagc aacgtgactt 501 caagacggaa gttaccgtgc ttactggccc ttcaggtgtg ggcaagtccc 551 ggtgggccaa tgaacaagtt gggacaaagt tctataaaat gaaaggtgat 601 tggtgggatg gatactgcaa tgaggatata gtaatcattg atgatttcta 651 tgggtggata cccttctgtg agctgctgag actgtgtgat cgatacccac 701 ataaggtgcc cgtcaagggg tcctatgtgg agttcaacag caagcagatc 751 atcattacca gtaacacccc accggactcg tggtataatg aagacaagtg 801 ttatgtgcaa gctctgttta gacgtataaa cagatggctt gtgtgggatg 851 ccacccagtt cgtggatgca ccggaagtga tgaagaagta tccgatcaac 901 tactgaccgg aaacggaaat gacgtcaccg gaaatgacga cactcgagat 951 cttgttatta taaaaaataa aacggggggt ccggggggga gccccagccc 1001 cccgcgaagc ggggggctga tcagggcgct ccccccccgg tgtcgtggac 1051 ctttagccgt ccacgaccgc gagggcgccg taggcgaccg aagcgtgtcc 1101 cccgggccga aggcccgggt ctacactcga cctcgaggaa aaaaaaataa 1151 ataaataata caccggaaac ggaaatgacg tcacttcctt tattcaaaga 1201 attctgggaa agagtcggga ccttcatcgt cctcaatgac attcatgagt 1251 tccatgtggg gtgggaggtc ggccattaca ttgggggttg gggggtcact 1301 cagagcagtc catgcaaact gcctgaattt catatagaag gttatattgg 1351 cctggtaagc ccactcatct ggtgatggct gcaggtagct gaaagctatc 1401 ccgtagtgtt tcactttttt gggtttaatc tgggcagcat tcaactgcag 1451 ggggatccaa aatgccttct ggctgtttaa ccatagagca gccgtttcat 1501 tagcagtaga taggtcagta atcaccagtt gaggtttagg ccttaccagc 1551 ctcttaaacc ccttcctctg atcccatttc agggccccat cccaattagc 1601 tagggggtcg tcagccagcc cctttttctt aacaaaattc ataagtctgg 1651 catcagtgat aggcactgta tgccctaacc ccttccactc agtagagttc 1701 tcccctaggg gtctcatctc gacctttaca agaacaatct tatagtcctc 1751 aaaaggtaat ttgagactat cacccccagt ggggttaagt acgtcttcaa 1801 gagtaaaagt aaagacatca gtcccatatt taaaagagcc tccctcgtcc 1851 ttttgaagag tgactttgac agagtgccga agtctaaagt aatagacacg 1901 gttggctctg tgccctcttc tgttcctcgg caaccgcctg gtccgtctcc 1951 gcctcctgta gtgacgtctc cgataacggg gtcgaagtcc gcgtctccac 2001 ctccgtctcg atagcaacat ggttaataat taaccagtgg ctccaagtgg 2051 ccgtttcagt att