Sequence of DPV Pelargonium flower break virus
Pelargonium flower break virus isolate SP18, complete genome.
ACC No: DQ256073
Dated: 2006-04-05 | Length: 3923 | CRC: 271885556
ID DQ256073 standard; genomic RNA; VRL; 3923 BP.
XX
AC DQ256073;
XX
SV DQ256073.1
XX
DT 05-APR-2006 (Rel. 87, Created)
DT 05-APR-2006 (Rel. 87, Last updated, Version 1)
XX
DE Pelargonium flower break virus isolate SP18, complete genome.
XX
KW .
XX
OS Pelargonium flower break virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-3923
RA Rico P., Hernandez C.;
RT "Infectivity of in vitro transcripts from a full-length cDNA clone of
RT Pelargonium flower break virus in an experimental and a natural host";
RL J. Plant Pathol. 88(1):103-106(2006).
XX
RN [2]
RP 1-3923
RA Rico P., Hernandez C.;
RT ;
RL Submitted (21-OCT-2005) to the EMBL/GenBank/DDBJ databases.
RL IBMCP, CSIC, Avenida de lo Naranjos, Valencia, Valencia 46022, Spain
XX
FH Key Location/Qualifiers
FH
FT source 1. .3923
FT /organism="Pelargonium flower break virus"
FT /specific_host="Pelargonium x hortorum"
FT /lab_host="Chenopodium quinoa"
FT /isolate="SP18"
FT /mol_type="genomic RNA"
FT /country="Spain"
FT /db_xref="taxon:35291"
FT gene 33. .2303
FT /gene="p86"
FT CDS 33. .2303
FT /codon_start=1
FT /transl_except=(pos:762. .764,aa:OTHER)
FT /gene="p86"
FT /product="RNA-dependent RNA polymerase"
FT /note="translation requires read-through of stop codon"
FT /protein_id="ABB79925.1"
FT /translation="MLRFGSQLVVGSTLIGGLTAVGLAGLSVRATIGVVEFNLRCARVV
FT GDIIRDPFNALPSAPLFPGPSVEVFAEEVRKDLEPELEAKDYLVIHEEKEVDEEGKSKV
FT VRQRSTVNRHKKGRFVHRLVCDGKNHFGGTPSASRANELAVMKYLVGKCREHRLVVQHT
FT REVCSLAMAAIFTPDHHEVNMVREMNSHAAYRRRVALADAARVHSWQQELLRSPLSWNA
FT WGRAWWIANGLPDREPVRFTKXGGLFCLEGVETGVRRGTHPQMIEVEKNSPPKLRKLFA
FT QRLVSSGVEYRVHNHSFQNLRRGVLERVFYVEENKQLVSCPCPEKGAFKEMGYLRRQFV
FT RLTPKHARISAKEFVDCYHGRKKSVYEFAAMTLSERPLDRKDASLKTFIKAEKFCKADP
FT APRVIQPRSPRYNVELGRYLKKFEHSAYRTLDKIWGGKTVMKGYSVDEIGKHISEAWDS
FT FHSPVAVGFDMSRFDQHVSVPALQFEHSCYLACFPGDQHLAELLSWQLKNFGVGFASNG
FT MVRYKKDGCRMSGDMNTALGNCLLACLITRHLMKDINCRLVNNGDDCVLFLDKKDLPFV
FT VSNLTTGWRRFGFKCIAEEPVYELEHVRFCQMAPVYDGSQYVMLRDPFVSMSKDSFSLT
FT HWNTTKNAKQWMKSVGICGERITGGLPVVQEYYRKYQEIAGDVKFSHSLEITSSGTYRL
FT AQNSSRAYGSVSEMARFSFFLAFGVIPDAQIALEKHIRDMPVAAEFGPDESLADHTIEW
FT LLK"
FT gene 33. .764
FT /gene="p27"
FT CDS 33. .764
FT /codon_start=1
FT /gene="p27"
FT /product="putative polymerase-associated protein"
FT /protein_id="ABB79924.1"
FT /translation="MLRFGSQLVVGSTLIGGLTAVGLAGLSVRATIGVVEFNLRCARVV
FT GDIIRDPFNALPSAPLFPGPSVEVFAEEVRKDLEPELEAKDYLVIHEEKEVDEEGKSKV
FT VRQRSTVNRHKKGRFVHRLVCDGKNHFGGTPSASRANELAVMKYLVGKCREHRLVVQHT
FT REVCSLAMAAIFTPDHHEVNMVREMNSHAAYRRRVALADAARVHSWQQELLRSPLSWNA
FT WGRAWWIANGLPDREPVRFTK"
FT gene 2288. .2494
FT /gene="p7"
FT CDS 2288. .2494
FT /codon_start=1
FT /gene="p7"
FT /product="putative movement protein"
FT /protein_id="ABB79926.1"
FT /translation="MASKVIVPDLGSDNEIDVPVGGRGNRGKQKGKISVAKDAVSKRTS
FT DGGNGGSWVVVAETVSVNIHFNF"
FT gene 2328. .2648
FT /gene="p12"
FT CDS 2328. .2648
FT /codon_start=1
FT /gene="p12"
FT /product="putative movement protein"
FT /protein_id="ABB79927.1"
FT /translation="MRLTCQWEDVGIGGNRRVRYPSQRTLSPNGHLMVVMGVLGLLWLR
FT PFRSIYTSTFSMPPLINLQHILNLTLLSLILSSFILAERVTHNHYSNDNSKAQYIRIST
FT GQ"
FT gene 2650. .3687
FT /gene="CP"
FT CDS 2650. .3687
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="ABB79928.1"
FT /translation="MDVYKNDPIVRQAVAKGVAWAVKLNTRGWSSLTTQQKKAARSALS
FT VIQSPAVVVPRRTRVRNPVPAGLKSGNGKAGKSSTLTRSEFICNVSSTTGVTPTFQSWI
FT INPREVKSFPQSSVCSVGYNKYRITDFRIRFSTSCSDTMNGKVAIGFTPDSSDPVPVDK
FT SQLYGMQVYADTPAKESVTLKTAADNTIRFLRDSSSDDAKLVDYGRVVLATYGFDSTAP
FT SVIGELFFEYTVVYLDPTYVVALTQHGTLTTSSGPPYATLTTTATSTSMELNTHGKWLV
FT VWVSADEVINSPVISGSGASGSVTVVSDAQTTVVAVVTANLPGAIISNTSTAAPSSLEW
FT YVSRL"
XX
SQ Sequence 3923 BP; 991 A; 927 C; 1085 G; 920 T; 0 other;
dq256073 Length: 3923 05-APR-2006 Type: N Check: 5951 ..
1 gggatacatt acactcggta tctggttcca acatgctacg attcggatct
51 cagttagtgg tgggttctac cttaatcggt ggtctcactg ctgtcgggct
101 ggcaggcctg agcgtgcgtg ctacaatagg tgtagtggaa ttcaacctcc
151 gctgtgctag agtggtgggt gacatcatac gtgacccatt taatgccctc
201 ccttcggccc ctctattccc cgggcccagc gttgaggttt tcgctgagga
251 ggtgaggaag gacctcgagc cggagcttga ggctaaggat tacctcgtca
301 tccacgagga aaaagaagtg gatgaggagg ggaagagcaa ggtggttagg
351 cagaggtcta ctgtcaaccg ccacaagaag ggccggtttg tccatcggct
401 agtctgtgat gggaaaaacc actttggtgg gaccccttca gctagccggg
451 ccaacgagct ggccgtaatg aagtatctcg tgggtaagtg ccgcgagcac
501 cgcttagtgg tgcagcacac ccgcgaagtc tgctctctgg cgatggctgc
551 tattttcacc ccagaccacc atgaagtaaa catggttagg gagatgaaca
601 gccacgctgc ctaccgaaga agggtagctc ttgcagatgc cgccagagtc
651 catagctggc agcaggagct actccgctca cccctgagtt ggaacgcttg
701 ggggagggcg tggtggatag ccaacgggct tcctgacagg gagcctgtcc
751 ggttcaccaa ataggggggt cttttctgcc tcgagggtgt tgaaacagga
801 gtccgtaggg ggacgcaccc acagatgatc gaggtagaga aaaactcccc
851 cccgaaactt aggaaactct tcgcccaacg gttggttagc agtggagttg
901 aataccgcgt gcataaccac tcgtttcaaa acctaaggcg aggtgtgctt
951 gagagagttt tctacgtgga agaaaataag cagttagtat cgtgtccctg
1001 tccggaaaag ggggccttca aggaaatggg ttacctacga aggcaattcg
1051 ttagacttac tcccaaacat gccaggatct cagcaaagga atttgttgat
1101 tgctatcatg gtaggaagaa gagtgtctac gagtttgctg ccatgaccct
1151 ctctgagaga cctctggacc gcaaggatgc cagcttgaag acgtttataa
1201 aggccgaaaa attttgcaag gccgacccag ctccccgggt tatacaacca
1251 agaagtccgc gctacaacgt tgaattaggc cgatatctca agaaattcga
1301 acactcggcc tacagaacgc tggacaagat ctggggagga aagaccgtga
1351 tgaaagggta ctctgtggat gagataggga aacatatctc agaggcgtgg
1401 gattcattcc actctccggt tgctgtcgga ttcgacatga gccggttcga
1451 ccagcacgtt agtgtgcctg cgcttcaatt cgaacacagt tgttaccttg
1501 cctgttttcc cggagaccag catttggcgg aactcttgag ctggcagctc
1551 aagaattttg gcgtagggtt cgcgtcaaat ggaatggtta gatataagaa
1601 ggatgggtgt agaatgtccg gagacatgaa cactgcactg ggaaactgcc
1651 tattggcttg cctcataact aggcacctca tgaaggacat aaattgtcga
1701 ctcgtcaaca acggggatga ctgtgtattg ttcttggata aaaaggacct
1751 cccattcgtc gtgagtaatt taacgacggg ctggcgtagg ttcgggttca
1801 agtgcattgc agaggagcca gtatacgagc tagagcacgt gaggttttgt
1851 cagatggccc cagtgtatga tggatcgcaa tacgtcatgt tgcgtgatcc
1901 gttcgtgtcc atgtcaaagg atagtttttc actcacccat tggaacacca
1951 caaagaatgc caaacaatgg atgaaatccg tgggcatctg tggtgaaagg
2001 attacaggtg ggttaccagt tgtgcaagaa tactacagaa agtatcagga
2051 aattgctgga gacgtgaagt tctctcattc cctagagata acctcatctg
2101 gaacgtacag gttagcccag aattcttctc gggcctatgg ttcagttagc
2151 gagatggcgc gttttagttt cttcctggca tttggagtta tcccagatgc
2201 tcagattgcc ttggagaaac acataagaga catgcccgtc gcagctgaat
2251 ttgggcccga tgaaagtctg gcagaccaca caattgaatg gcttctaaag
2301 tgatcgttcc tgatttgggt agtgataatg agattgacgt gccagtggga
2351 ggacgtggga atagggggaa acagaagggt aagatatccg tcgcaaagga
2401 cgctgtctcc aaacggacat ctgatggtgg taatgggggt tcttgggttg
2451 ttgtggctga gaccgtttcg gtcaatatac acttcaactt ttagcatgcc
2501 ccctctgata aacctccaac acatattgaa tcttaccttg ttgtccctga
2551 ttctaagttc tttcatcttg gcagagagag taacgcacaa tcactactca
2601 aacgacaaca gcaaagcgca atatatacgg atctcaactg ggcaataaca
2651 tggacgtcta caagaatgac ccaatagtta ggcaggcagt ggcaaaggga
2701 gtagcttggg cggttaagct gaacactaga gggtggtctt cattgaccac
2751 ccaacagaag aaagctgcgc gctcagctct gtctgtgata caatccccag
2801 cggtggttgt acctcgcaga accagagtac gaaacccagt acccgcgggc
2851 ctgaaatcag ggaatggcaa ggcagggaag agctcaactc taacccgatc
2901 ggagtttatc tgcaacgtat cgagcacaac cggagtgacc ccgactttcc
2951 aatcatggat cataaatcct agggaggtca aaagtttccc acaatcttcc
3001 gtctgctcgg ttggctacaa caagtacagg atcacggact tcaggattag
3051 gttttctact tcctgttccg acactatgaa tgggaaggtg gccattggct
3101 tcactcccga ctctagcgat ccggttcctg ttgataagtc acagctgtac
3151 gggatgcagg tgtatgccga cactccagca aaggagtcgg tcaccttgaa
3201 aacggctgcg gataatacga tcaggttcct gcgggattca tccagcgatg
3251 atgccaagct ggtggattat ggccgcgtag ttttagccac atacggtttt
3301 gatagcacag ctccgtcagt gattggagag ctgttcttcg aatacaccgt
3351 agtctatctc gaccctacct atgtcgtggc tttaacacaa catggcacgt
3401 tgaccacctc atctggcccc ccatatgcta ccttgaccac cactgccact
3451 tcaacatcca tggaattaaa cacccatgga aagtggctag tggtttgggt
3501 ctcggcagac gaggtgatca actctccggt tatatccggg tccggggcaa
3551 gcggatccgt aactgtcgtt agcgacgcac agactactgt tgttgcagtg
3601 gtcaccgcaa acttgccagg cgccatcatt tccaacactt caaccgctgc
3651 cccttcgtca ctggagtggt acgtatctag gctatgagag ggcagtcacc
3701 ctaccttctg ccagaggttc ccggaggagt agtgatcctt tgggggtgat
3751 tcatagctag gaaaggtcgg agagttggga ggaggccaaa tgggggaggt
3801 gctaggagca ccagaggcag cagagcaaaa atccgggttt catcgcctgg
3851 tgcgggcgct caatgctgct aacaagttcc agaaggaaga aaggttttgg
3901 tcgatggaga ccttaacccg ccc