Sequence of DPV Blueberry scorch virus

Blueberry scorch virus isolate BC2-5 coat protein (CP) gene, partial cds.

ACC No: DQ266466

Dated: 2007-01-20 | Length: 870 | CRC: 1958031739

                
ID   DQ266466; SV 1; linear; genomic RNA; STD; VRL; 870 BP.
XX
AC   DQ266466;
XX
DT   20-JAN-2007 (Rel. 90, Created)
DT   20-JAN-2007 (Rel. 90, Last updated, Version 1)
XX
DE   Blueberry scorch virus isolate BC2-5 coat protein (CP) gene, partial cds.
XX
KW   .
XX
OS   Blueberry scorch virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Carlavirus.
XX
RN   [1]
RP   1-870
RA   Wegener L.A., Martin R.R., Bernardy M.G., MacDonald L., Punja Z.K.;
RT   "Epidemiology and identification of strains of Blueberry scorch virus on
RT   highbush blueberry in British Columbia, Canada";
RL   Can. J. Plant Pathol. 28(2):250-262(2006).
XX
RN   [2]
RP   1-870
RA   Wegener L.A., Martin R.R., Bernardy M.G., MacDonald L., Punja Z.K.;
RT   ;
RL   Submitted (26-OCT-2005) to the EMBL/GenBank/DDBJ databases.
RL   Centre for Environmental Biology, Department of Biological Sciences, Simon
RL   Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .870
FT                   /organism="Blueberry scorch virus"
FT                   /specific_host="Vaccinium corymbosum"
FT                   /isolate="BC2-5"
FT                   /mol_type="genomic RNA"
FT                   /country="Canada"
FT                   /db_xref="taxon:31722"
FT   gene            <1. .870
FT                   /gene="CP"
FT   CDS             <1. .870
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="ABB84485.1"
FT                   /translation="PVPVVPLAPPREPLVRPPPPQLQPAGAADAGPSSENQLERRLMNL
FT                   IEVLNGQRHNSSLKNVAFEIGRPNLEPVASMKRNPANPYGRFSIDELYKMDVQVVSNNM
FT                   ATTEQMAKISSAIAGLGVPTEQVAEVILKMVVMCASVSSSVYLDPDGSIEFDGGAVPID
FT                   SIAAIMKKEAGLRKVCRLYAPVVWNLMLVKDQPPSDWQAMGYPKEARFAAFDTFDYVTN
FT                   GAAIQPVEGLIRGPTPAECIAHNAHKRLALDRSNRNEKYGSLETEYTGGLQGAEIVRNH
FT                   RNAGNGSA"
XX
SQ   Sequence 870 BP; 216 A; 211 C; 244 G; 199 T; 0 other;

dq266466 Length: 870  20-JAN-2007  Type: N  Check: 4851  ..

       1  ccggtgcctg tggtgccctt ggcaccacca cgtgaaccac tggtgcgccc
      51  accaccacca caattgcagc ctgctggggc tgcggatgct ggtccaagct
     101  cggagaatca acttgaacgg aggctcatga acctcattga agtactgaat
     151  gggcagcgcc acaactctag tcttaagaat gtggcgttcg aaattggccg
     201  acccaatctg gagccagtcg cttctatgaa gcgtaaccct gcaaaccctt
     251  acgggcgttt ctcaattgat gagctgtaca agatggatgt gcaagtcgtg
     301  tcaaataaca tggcaactac agagcagatg gcaaagatct cttcagccat
     351  tgccgggctt ggagtgccga ctgagcaggt cgctgaagta atactgaaga
     401  tggttgtgat gtgcgctagc gttagcagtt ctgtgtacct ggaccccgac
     451  ggtagcattg agttcgacgg gggcgcagtg cccattgatt ctattgctgc
     501  aatcatgaaa aaagaagccg gattgcgcaa agtgtgcagg ctctacgctc
     551  ctgtcgtttg gaacctgatg ttagtcaagg atcagccgcc ttctgattgg
     601  caggctatgg gatacccgaa ggaggccagg tttgcggcgt ttgacacttt
     651  tgattacgta accaatgggg cagccataca accagttgag ggacttattc
     701  gtggtccaac tcccgctgaa tgcattgctc ataatgctca caagaggcta
     751  gctttggatc ggtcaaaccg caatgaaaaa tatgggagcc ttgagacgga
     801  gtacactggt gggcttcaag gtgcagaaat cgtccgcaat catcgaaatg
     851  cgggcaatgg atcagcatga