Sequence of DPV Soybean mosaic virus

Soybean mosaic virus isolate BZ polyprotein gene, partial cds.

ACC No: DQ360817

Dated: 2008-02-27 | Length: 846 | CRC: 1480999857

                
ID   DQ360817; SV 1; linear; genomic RNA; STD; VRL; 846 BP.
XX
AC   DQ360817;
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DT   07-FEB-2006 (Rel. 86, Created)
DT   27-FEB-2008 (Rel. 94, Last updated, Version 2)
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DE   Soybean mosaic virus isolate BZ polyprotein gene, partial cds.
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KW   .
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OS   Soybean mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-846
RX   PUBMED; 18058013.
RA   Sun H., Shentu S., Xue F., Duns G., Chen J.;
RT   "Molecular characterization and evolutionary analysis of soybean mosaic
RT   virus infecting Pinellia ternata in China";
RL   Virus Genes 36(1):177-190(2008).
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RN   [2]
RP   1-846
RA   Shentu S., Chen J.;
RT   ;
RL   Submitted (10-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL   Life Science, Microbiology, ZheJiang University, Kaixuan Load, Hnagzhou,
RL   ZheJiang 310029, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .846
FT                   /organism="Soybean mosaic virus"
FT                   /specific_host="Pinellia ternata"
FT                   /isolate="BZ"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /virion
FT                   /db_xref="taxon:12222"
FT   CDS             <1. .>846
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="encodes for NIb and coat proteins"
FT                   /db_xref="GOA:Q2HZ15"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q2HZ15"
FT                   /protein_id="ABC94934.1"
FT                   /translation="SGKETGEDLDAGKETKKNTNNEKGDKSQITQSTQSGKGTTSSGTK
FT                   DKDVNVGSKGKVVPRLQKITRKMNLPMVGGKIILNLDHLLEYKPNQVDLFHTRATKTQF
FT                   TAWYNAVKAEYGLEDEQMGVVMNGFMVWCIDNGTSPDTNGMWVMMDGEEQVEYPLKPIV
FT                   ENAKPTLRQIMHHFSDAAEAYIEMRNSEGPYMPRYGLLRNLRDRDLARYAFDFYEVTSK
FT                   TPNRAREALAQMKAAALTGVNNKLFGLDGNISTNAENTERRTARDVNQNMHTLLGMGPP
FT                   Q"
XX
SQ   Sequence 846 BP; 294 A; 151 C; 213 G; 188 T; 0 other;

dq360817 Length: 846  27-FEB-2008  Type: N  Check: 306  ..

       1  tcagggaagg agacaggtga agatttggat gcaggtaaag aaacaaagaa
      51  aaacaccaac aatgaaaaag gagataagtc tcagattaca caaagcactc
     101  aaagtggaaa aggaacaaca agttctggaa ctaaggacaa ggatgtaaat
     151  gttggatcaa aaggaaaagt tgttccacgt ctgcaaaaga tcacgaggaa
     201  aatgaatctc ccaatggttg gtggaaagat cattctcaat ctggatcatt
     251  tgctcgagta caaacctaat caggttgatt tgtttcacac tcgggcaaca
     301  aaaacacagt tcacagcatg gtataatgca gtcaaggctg agtatggact
     351  agaggatgag cagatgggtg tggtcatgaa cggcttcatg gtttggtgca
     401  tagataatgg cacatccccg gatactaatg gaatgtgggt aatgatggat
     451  ggagaagaac aagttgagta tccgctgaag cctattgttg aaaatgcaaa
     501  accaacttta aggcaaatca tgcatcattt ctcagatgca gcggaagctt
     551  acattgaaat gagaaactct gaaggtccgt atatgcctag atacggattg
     601  ctgaggaatc tgagagacag agatctggca cgctatgctt ttgatttcta
     651  tgaagtgact tccaagacac caaatagagc aagagaagca ttagcgcaaa
     701  tgaaggctgc agctctcacg ggagttaaca acaagttgtt tggacttgat
     751  ggcaacatct caaccaatgc cgaaaatact gagaggcgca ctgcgaggga
     801  cgtaaatcaa aacatgcaca ctcttttggg gatgggtcca ccgcag