Sequence of DPV Soybean mosaic virus

Soybean mosaic virus isolate LB polyprotein gene, partial cds.

ACC No: DQ360820

Dated: 2008-02-27 | Length: 846 | CRC: 2076235180

                
ID   DQ360820; SV 1; linear; genomic RNA; STD; VRL; 846 BP.
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AC   DQ360820;
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DT   07-FEB-2006 (Rel. 86, Created)
DT   27-FEB-2008 (Rel. 94, Last updated, Version 2)
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DE   Soybean mosaic virus isolate LB polyprotein gene, partial cds.
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KW   .
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OS   Soybean mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-846
RX   PUBMED; 18058013.
RA   Sun H., Shentu S., Xue F., Duns G., Chen J.;
RT   "Molecular characterization and evolutionary analysis of soybean mosaic
RT   virus infecting Pinellia ternata in China";
RL   Virus Genes 36(1):177-190(2008).
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RN   [2]
RP   1-846
RA   Shentu S., Chen J.;
RT   ;
RL   Submitted (12-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL   Life Science, Microbiology, ZheJiang University, Kaixuan Load, Hnagzhou,
RL   ZheJiang 310029, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .846
FT                   /organism="Soybean mosaic virus"
FT                   /specific_host="Pinellia ternata"
FT                   /isolate="LB"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /virion
FT                   /db_xref="taxon:12222"
FT   CDS             <1. .>846
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="encodes for NIb and coat proteins"
FT                   /db_xref="GOA:Q2HZ12"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q2HZ12"
FT                   /protein_id="ABC94937.1"
FT                   /translation="SGKETGEDLDAGKETKKNTNNEKGDKSQSTQSTQSGKGTTSTGTK
FT                   DKDINVGSKGKVVPRLQKITRKMNLPMVGGKIILNLDHLLEYKPNQVDLFNTRATKTQF
FT                   TAWYNAVKAEYGLEDEQMGVVMNGFMVWCIDNGTSPDTNGMWVMMDGEEQVEYPLKPIV
FT                   ENAKPTLRRIMHHFSDAAEAYIEMRNSEGPYMPRYGLLRNLRDRDLARYAFDFYEVTSK
FT                   TPNRAREALAQMKAAALTGVSNKLFGLDGNISTNAENTERHTARDVNQNMHTLLGMGPP
FT                   Q"
XX
SQ   Sequence 846 BP; 294 A; 144 C; 216 G; 192 T; 0 other;

dq360820 Length: 846  27-FEB-2008  Type: N  Check: 5097  ..

       1  tcagggaaag agacaggtga ggacttggat gcaggcaaag aaacaaagaa
      51  aaacactaac aatgaaaaag gagataagtc tcagagtaca caaagcactc
     101  aaagtggaaa aggaacaaca agcactggaa ccaaggataa ggatataaat
     151  gttggatcaa aaggaaaagt tgttccacgc ctgcaaaaga tcacgaggaa
     201  gatgaatctc ccaatggttg gtggaaagat cattcttaac ttggatcatt
     251  tgctcgaata caaacctaat caggttgatt tgtttaacac tcgggcaaca
     301  aagacacagt ttacagcatg gtataatgca gttaaggctg agtatggact
     351  agaggatgaa cagatgggtg tggttatgaa tggcttcatg gtttggtgta
     401  tagataatgg cacatcccca gatactaatg gaatgtgggt aatgatggat
     451  ggagaagaac aagtcgagta tccgctgaag cctattgttg aaaatgcaaa
     501  accaactttg aggcgaatca tgcatcattt ctcagatgca gcggaagctt
     551  atattgaaat gagaaactct gaaggtccgt atatgcctag atacggactg
     601  ctgaggaatt tgagagacag ggatctggcg cgctatgctt ttgattttta
     651  tgaagtgact tctaagacac caaatagagc aagagaggca ttagcgcaaa
     701  tgaaggctgc agctctcacg ggagttagca acaagttgtt tggacttgat
     751  ggtaatatct caaccaatgc cgaaaatact gagaggcaca ctgcgaggga
     801  cgtgaaccaa aacatgcaca ctcttttggg aatgggtcca ccacag