Sequence of DPV Groundnut bud necrosis virus

Peanut bud necrosis virus from India nucleocapsid protein gene, complete cds.

ACC No: DQ375811

Dated: 2011-02-27 | Length: 831 | CRC: -163121616

                
ID   DQ375811; SV 1; linear; genomic RNA; STD; VRL; 831 BP.
XX
AC   DQ375811;
XX
DT   03-MAR-2006 (Rel. 87, Created)
DT   27-FEB-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Peanut bud necrosis virus from India nucleocapsid protein gene, complete
DE   cds.
XX
KW   .
XX
OS   Peanut bud necrosis virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN   [1]
RP   1-831
RX   PUBMED; 21299415.
RA   Kunkalikar S.R., Poojari S., Arun B.M., Rajagopalan P.A., Chen T.C.,
RA   Yeh S.D., Naidu R.A., Zehr U.B., Ravi K.S.;
RT   "Importance and genetic diversity of vegetable-infecting tospoviruses in
RT   India";
RL   Phytopathology 101(3):367-376(2011).
XX
RN   [2]
RP   1-831
RA   Bhanupriya M., Sreenivasulu P., Usha Z.B., Ravi K.S.;
RT   "Nucleotide diversity of Tospoviruses infecting economically important
RT   crops in India";
RL   Unpublished.
XX
RN   [3]
RP   1-831
RA   Bhanupriya M., Sudarsana P., Ravi K.S.;
RT   ;
RL   Submitted (23-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Virology, Mahyco Life Sciences Research Center, Jalma-Aurnagabad
RL   Road, Dawalwadi, Jalna, Maharashtra 413 203, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .831
FT                   /organism="Peanut bud necrosis virus"
FT                   /host="Solanum melongena L. (Brinjal)"
FT                   /mol_type="genomic RNA"
FT                   /country="India:dairyfarm, Jalna, Maharashtra"
FT                   /collection_date="2005"
FT                   /note="serogroup: IV"
FT                   /db_xref="taxon:40687"
FT   CDS             1. .831
FT                   /codon_start=1
FT                   /product="nucleocapsid protein"
FT                   /db_xref="GOA:Q6R622"
FT                   /db_xref="InterPro:IPR002517"
FT                   /db_xref="UniProtKB/TrEMBL:Q6R622"
FT                   /protein_id="ABD39047.1"
FT                   /translation="MSNVKQLTEKKIKELLAGGSADVEIETEDSTPGFSFKAFYDANKT
FT                   LEITFTNCLNILKCRKQIFAACKSGKYVFCGKTIVATNTDVGPDDWTFKRTEAFIRTKM
FT                   ASMVEKSKNDAAKQEMYNKIMELPLVAAYGLNVPASFDTCALRMMLCIGGPLPLLSSMT
FT                   GLAPIIFPLAYYQNVKKEKLGIKNFSTYEQVCKVAKVLSASQIEFKNELEEMFKSAVKL
FT                   LSESNPGTASSISLKKYDEQVKYMDKAFSASLSVDDYGEHSKKKSSKAGPSLEL"
XX
SQ   Sequence 831 BP; 274 A; 145 C; 176 G; 236 T; 0 other;

dq375811 Length: 831  27-FEB-2011  Type: N  Check: 1610  ..

       1  atgtctaacg tcaagcaact caccgagaag aaaatcaaag aacttttggc
      51  tggtggctct gcagatgttg aaattgaaac agaagattcc actcccggat
     101  ttagctttaa agctttctat gacgctaaca aaactcttga aataacattc
     151  acaaactgtt tgaacatctt gaagtgcagg aagcagatct ttgctgcttg
     201  caaaagtggt aagtatgttt tttgtggtaa aactattgtt gctacaaata
     251  ctgacgtagg gccagatgac tggaccttca aaaggacaga agctttcatc
     301  aggaccaaaa tggctagtat ggttgaaaag agcaagaatg atgctgctaa
     351  gcaggagatg tacaataaaa taatggaatt accattagtg gcagcttatg
     401  gattaaatgt ccctgcatct ttcgatacat gtgctttaag gatgatgctc
     451  tgcattggag gtcctctgcc tctcttgtct agcatgacag gtctggcacc
     501  aattatattc cctctggctt attatcaaaa tgtgaagaaa gagaaattag
     551  gaattaagaa cttttctact tatgaacagg tttgcaaagt agccaaagta
     601  ctttctgctt cacagattga atttaaaaat gaactagagg aaatgtttaa
     651  atcagctgta aagctattga gtgagagcaa ccctggaact gccagctcta
     701  tctcactcaa gaaatatgat gaacaagtca aatatatgga caaagctttc
     751  agtgctagtc tctcagtgga tgattatggt gaacattcta agaaaaagag
     801  ttcaaaggct ggtccttcgc tggaattgta a