Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate P166 nonstructural protein (NSs) and nucleocapsid (N) genes, complete cds.
ACC No: DQ376179
Dated: 2006-03-06 | Length: 2925 | CRC: 324593663
ID DQ376179 standard; genomic RNA; VRL; 2925 BP.
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AC DQ376179;
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SV DQ376179.1
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DT 06-MAR-2006 (Rel. 87, Created)
DT 06-MAR-2006 (Rel. 87, Last updated, Version 1)
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DE Tomato spotted wilt virus isolate P166 nonstructural protein (NSs) and
DE nucleocapsid (N) genes, complete cds.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-2925
RA Margaria P., Ciuffo M., Turina M.;
RT "Molecular characterization of resistance-breaking strains of tomato
RT spotted wilt virus (Tospovirus, Bunyaviridae) infecting resistant pepper
RT carrying the TSW gene";
RL Unpublished.
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RN [2]
RP 1-2925
RA Margaria P., Ciuffo M., Turina M.;
RT ;
RL Submitted (25-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL IVV, CNR, Strada Delle Cacce 73, Torino, TO 10135, Italy
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FH Key Location/Qualifiers
FH
FT source 1. .2925
FT /organism="Tomato spotted wilt virus"
FT /segment="S"
FT /specific_host="pepper"
FT /isolate="P166"
FT /mol_type="genomic RNA"
FT /country="Italy"
FT /note="resistance-breaking strain on Capsicum chinense
FT PI152225"
FT /db_xref="taxon:11613"
FT gene 89. .1492
FT /gene="NSs"
FT CDS 89. .1492
FT /codon_start=1
FT /gene="NSs"
FT /product="nonstructural protein"
FT /note="putative silencing suppressor"
FT /protein_id="ABD38690.1"
FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ
FT LYSDSRSKSSFGYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT
FT VNANGVKHQGHLKVLSPAQLHSIGSIMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS
FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL
FT MSAENNIMPNSQAFVKASTDSHFRLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI
FT ACIPNYNSVETALNITVICKHQLPIRKFKAPLELSMMFSDLKEPYNIVHDPSYPQRIVH
FT ALLETHTSFAQVLCNNLQEDVIIYTLNNHELTPGKLDLGEKTLNYSEDAYKRKYFLSKT
FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSISVAKSLLKLDLSGIKKKESKI
FT KEAHASGSK"
FT gene complement(1998. .2774)
FT /gene="N"
FT CDS complement(1998. .2774)
FT /codon_start=1
FT /gene="N"
FT /product="nucleocapsid"
FT /protein_id="ABD38691.1"
FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI
FT KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA"
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SQ Sequence 2925 BP; 927 A; 550 C; 469 G; 979 T; 0 other;
dq376179 Length: 2925 06-MAR-2006 Type: N Check: 4618 ..
1 agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat
51 cacaatactg taataagaac acagtaccaa taaccataat gtcttcaagt
101 gtttatgagt cgatcattca gacaagagct tcagtctggg gatcaactgc
151 atctggtaaa gctgttgtag attcttactg gattcatgaa cttggtactg
201 gttctcaact agttcagacc caactgtatt ctgattcaag aagcaaaagt
251 agctttggct atactgcaaa agtaggggat cttccttgtg aagaagaaga
301 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta
351 gcatcaatat tgatgactct gttctggcat tatctgtttg ctcaaataca
401 gtcaatgcta atggagtgaa acatcaaggt catttgaagg ttttgtctcc
451 tgctcagctc cactctattg gatctatcat gaacagatct gatattacgg
501 atcgattcca gctccaagaa aaagatataa ttcccaatga cagatacatt
551 gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa
601 gatcgagatg tgctataatc aagctttagg caaagtgaat gttctatctc
651 ctaatagaaa tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat
701 caagttgaaa gcaacaacag aactgtgaat tctcttgcag tgaaatctct
751 gctcatgtca gcagaaaaca acatcatgcc taactctcaa gcttttgtca
801 aagcttccac tgattctcat ttcaggctga gcctctggct aagggttcca
851 aaggttttga agcagatttc cattcagaaa ttgttcaagg ttgcaggaga
901 tgaaacaaat aaaacatttt atttatctat tgcctgcatt ccaaactata
951 acagcgttga gacagcttta aacattactg ttatttgcaa acatcagctc
1001 ccaattcgta aatttaaagc tcctcttgaa ttatcaatga tgttttctga
1051 tttaaaggag ccttacaaca ttgttcatga tccttcatat ccccaaagga
1101 ttgttcatgc tctgcttgaa actcacacat cttttgcaca agttctttgc
1151 aacaacttgc aagaagatgt gatcatctac accttgaaca accatgagct
1201 aactcctgga aagttagatt taggtgaaaa aaccttgaat tacagtgaag
1251 atgcctacaa aaggaaatat ttcctttcaa aaacacttga atgtcttcca
1301 tctaacacac aaactatgtc ttatttagac agtatccaaa tcccttcctg
1351 gaagatagac tttgccaggg gagaaattaa aatttctccg caatctattt
1401 cagttgcaaa atctttgtta aagcttgatt taagcgggat caaaaagaaa
1451 gaatctaaga ttaaggaagc acatgcttca ggatcaaaat gatcttgctg
1501 tgtccagctt tttctaatta tgttatgttt attttcctcc tttacttata
1551 attatttctc tgtttgtcat ttctttcaaa ttcctcctgc ctagtagaaa
1601 ccataaaaac aaaaataaaa ataaaataaa atcaaaataa aataaaaatc
1651 aaaaaatgaa ataaaaacaa caaaaaaatt aaaaacaaaa aaccaaaaaa
1701 gatcccgaaa gggacaattt tggccaaatt tgggttttgt ttttgttttt
1751 tgttttttgt tttgttttta tttttatttt ttatttttta ttttacttta
1801 ttttattttt atttgttttt attttatgtt ttttgttggt ttttttatta
1851 tgttatttat taagcacaac acacagaaag caaactttaa ttaaacacac
1901 ttatttaaaa tttaacacac taagcaagca caagcaataa agataaagaa
1951 agctttatat atttataggt tttttataat ttaactcaca gctgctttta
2001 agcaagttct gcgagttttg cctgtttttt aaccccaaac atttcataga
2051 acttgttaag agtttcactg taatgttcca tagcaatact tcctttagca
2101 ttaggattgc tggagctaag tatagcagca tactctttcc ccttcttcac
2151 ctgatcttca ttcatttcaa atgctttgct tttcagcaca gtgcaaactt
2201 tccctaaggc ttccctggtg tcatacttct ttgggtcgat cccaaggtcc
2251 ttgtattttg catcctgata tatagccaag acaacactga tcatctcaaa
2301 gctatcgact gaagcaataa gaggtaagct acctcccagc attatggcaa
2351 gcctcacaga ctttgcatca tcaagaggta atccataggc ttgaatcaaa
2401 gggtgggaag caatcttaga tttgatagta ttgagattct cggaattccc
2451 agtttcctca acaagcctga ccctgatcaa gctatcaagc cttctgaagg
2501 tcatgtcagt ggctccaatc ctgtctgaag ttttctttat ggtaatttta
2551 ccaaaagtaa aatcactttg cttaataacc ttcattatgc tctgacgatt
2601 cttcaggaat gtcagacatg aaataacact catctttttg atctggtcaa
2651 ggttttccag acaaaaagtc ttgaagttga atgctaccag attctgatct
2701 tcctcaaact caaggtcttt gccttgtgtc aacaaagcaa caatgctttc
2751 cttagtgagc ttaaccttag acatgatgat cgtagaagtt gttatatgct
2801 ttgaccgtat gtaactcaag gtgcaaaagt acaactctgt atcccgcagt
2851 cgtttcttag ggttttaatg tgatgatttg taagactgag tgttaaggtt
2901 tgaataaaat tgacacaatt gctct