Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate P105-43.14 nonstructural protein (NSs) and nucleocapsid (N) genes, complete cds.
ACC No: DQ376182
Dated: 2006-03-06 | Length: 2927 | CRC: -2048801957
ID DQ376182 standard; genomic RNA; VRL; 2927 BP.
XX
AC DQ376182;
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SV DQ376182.1
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DT 06-MAR-2006 (Rel. 87, Created)
DT 06-MAR-2006 (Rel. 87, Last updated, Version 1)
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DE Tomato spotted wilt virus isolate P105-43.14 nonstructural protein (NSs)
DE and nucleocapsid (N) genes, complete cds.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-2927
RA Margaria P., Ciuffo M., Turina M.;
RT "Molecular characterization of resistance-breaking strains of tomato
RT spotted wilt virus (Tospovirus, Bunyaviridae) infecting resistant pepper
RT carrying the TSW gene";
RL Unpublished.
XX
RN [2]
RP 1-2927
RA Margaria P., Ciuffo M., Turina M.;
RT ;
RL Submitted (25-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL IVV, CNR, Strada Delle Cacce 73, Torino, TO 10135, Italy
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FH Key Location/Qualifiers
FH
FT source 1. .2927
FT /organism="Tomato spotted wilt virus"
FT /segment="S"
FT /specific_host="pepper"
FT /isolate="P105-43.14"
FT /mol_type="genomic RNA"
FT /country="Italy"
FT /note="resistance-breaking strain"
FT /db_xref="taxon:11613"
FT gene 89. .1492
FT /gene="NSs"
FT CDS 89. .1492
FT /codon_start=1
FT /gene="NSs"
FT /product="nonstructural protein"
FT /note="putative silencing suppressor"
FT /protein_id="ABD38696.1"
FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ
FT LYSDSRSKSSFGYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT
FT VNANGVNHQGHLKVLSPAQLHSIGSIMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS
FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL
FT MSAENNIMPNSQAFVKASTDSHFRLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI
FT ACIPNYNSVETALNITVICKHQLPIRKFKAPFELSMMFSDLKEPYNIVHDPSYPQRIVH
FT ALLETHTSFAQVLCNNLQEDVIIYTLNNHELTPGKLDLGEKTLNYSEDAYKRKYFLSKT
FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSVSVAKSLLKLDLSGIKKKESKI
FT KEAHASGSK"
FT gene complement(2000. .2776)
FT /gene="N"
FT CDS complement(2000. .2776)
FT /codon_start=1
FT /gene="N"
FT /product="nucleocapsid"
FT /protein_id="ABD38697.1"
FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI
FT KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA"
XX
SQ Sequence 2927 BP; 924 A; 550 C; 470 G; 983 T; 0 other;
dq376182 Length: 2927 06-MAR-2006 Type: N Check: 3219 ..
1 agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat
51 cacaatactg taataagaac acagtaccaa taaccataat gtcttcaagt
101 gtttatgagt cgatcattca gacaagagct tcagtctggg gatcaactgc
151 atctggtaaa gctgttgtag attcttactg gattcatgaa cttggtactg
201 gttctcaact agttcagacc caactgtatt ctgattcaag aagcaaaagt
251 agctttggct atactgcaaa agtaggggat cttccttgtg aagaagaaga
301 gattctttct cagcatgtgt atatccctat ctttgatgat attgatttta
351 gcatcaatat tgatgactct gttctggcat tatctgtttg ctcaaataca
401 gtcaatgcta atggagtgaa tcatcaaggt catttgaagg ttttgtctcc
451 tgctcagctc cactctattg gatctatcat gaacagatct gatattacgg
501 atcgattcca gctccaagaa aaagatataa ttcccaatga cagatacatt
551 gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa
601 gatcgagatg tgctataatc aagctttagg caaagtgaat gttctatctc
651 ctaatagaaa tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat
701 caagttgaaa gcaacaacag aactgtgaat tctcttgcag tgaaatctct
751 gctcatgtca gcagaaaaca acatcatgcc taactctcaa gcttttgtca
801 aagcttccac tgattctcat ttcaggctga gcctctggct aagggttcca
851 aaggttttga agcagatttc cattcagaaa ttgttcaagg ttgcaggaga
901 tgaaacaaat aaaacatttt atttatctat tgcctgcatt ccaaactata
951 acagtgttga gacagcttta aacattactg ttatttgcaa acatcagctc
1001 ccaattcgta aatttaaagc tccttttgaa ttatcaatga tgttttctga
1051 tttaaaggag ccttacaaca ttgttcatga tccttcatat ccccaaagga
1101 ttgttcatgc tctgcttgaa actcacacat cttttgcaca agttctttgc
1151 aacaacttgc aagaagatgt gatcatctac accttgaaca accatgagct
1201 aactcctgga aagttagatt taggtgaaaa aaccttgaat tacagtgaag
1251 atgcctacaa aaggaaatat ttcctttcaa aaacacttga atgtcttcca
1301 tctaacacac aaactatgtc ttatttagac agcatccaaa tcccttcctg
1351 gaagatagac tttgccaggg gagaaattaa aatttctccg caatctgttt
1401 cagttgcaaa atctttgtta aagcttgatt taagcgggat caaaaagaaa
1451 gaatctaaaa ttaaggaagc acatgcttca ggatcaaaat gatcttgctg
1501 tgtccagctt tttctaatta tgttatgttt attttcctcc tttacttata
1551 attatttctc tgtttgtcat ttctttcgaa ttcctcctgc ctagtagaaa
1601 ccataaaaac aaaaataaaa ataaaataaa atcaaaataa aataaaaatc
1651 aaaaaatgaa ataaaaacaa caaaaaatta aaaaacaaaa aaccaaaaaa
1701 gatcccgaaa gggacaattt tggccaaatt tgggttttgt ttttgttttt
1751 tgttttttgt tttttgtttt ttatttttat tttttatttt tcattttact
1801 ttattttatt tttatttgtt tttattttat gttttttgtt ggttttttat
1851 tatgttattt attaagcaca acacacagaa agcaaacttt aattaaacac
1901 acttatttaa aatttaacac actaagcaag cacaagcaat aaagataaag
1951 aaagctttat atatttatag gttttttata atttaactta cagctgcttt
2001 taagcaagtt ctgcgagttt tgcctgtttt ttaaccccaa acatttcata
2051 gaacttgtta agagtttcac tgtaatgttc catagcaata cttcctttag
2101 cattaggatt gctggagcta agtatagcag catactcttt ccccttcttc
2151 acctgatctt cattcatttc aaatgctttg cttttcagca cagtgcaaac
2201 tttccctaag gcttccctgg tgtcatactt ctttgggtcg atcccaaggt
2251 ccttgtattt tgcatcctga tatatagcca agacaacact gatcatctca
2301 aagctatcga ctgaagcaat aagaggtaag ctacctccca gcattatggc
2351 aagcctcaca gactttgcat catcaagagg taatccatag gcttgaatca
2401 aagggtggga agcaatctta gatttgatag tattgagatt ctcggaattc
2451 ccagtttcct caacaagcct gaccctgatc aagctatcaa gccttctgaa
2501 ggtcatgtct gtggctccaa tcctgtctga agttttcttt atggtaattt
2551 taccaaaagt aaaatcactt tgcttaataa ccttcattat gctctgacga
2601 ttcttcagga atgtcagaca tgaaataaca ctcatctttt tgatctggtc
2651 aaggttttcc agacaaaaag tcttgaagtt gaatgctacc agattctgat
2701 cttcctcaaa ctcaaggtct ttgccttgtg tcaacaaagc aacaatgctt
2751 tccttagtga gcttaacctt agacatgatg atcgtagaag ttgttatatg
2801 ctttgaccgt atgtaactca aggtgcaaaa gtacaactct gtatcccgca
2851 gtcgtttctt agggttttaa tgtgatgatt tgtaagactg agtgttaagg
2901 tttgaataaa attgacacaa ttgctct