Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate VE427 nonstructural protein (NSs) and nucleocapsid (N) genes, complete cds.
ACC No: DQ376185
Dated: 2006-03-06 | Length: 2922 | CRC: -1294796936
ID DQ376185 standard; genomic RNA; VRL; 2922 BP.
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AC DQ376185;
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SV DQ376185.1
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DT 06-MAR-2006 (Rel. 87, Created)
DT 06-MAR-2006 (Rel. 87, Last updated, Version 1)
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DE Tomato spotted wilt virus isolate VE427 nonstructural protein (NSs) and
DE nucleocapsid (N) genes, complete cds.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-2922
RA Margaria P., Ciuffo M., Turina M.;
RT "Molecular characterization of resistance-breaking strains of tomato
RT spotted wilt virus (Tospovirus, Bunyaviridae) infecting resistant pepper
RT carrying the TSW gene";
RL Unpublished.
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RN [2]
RP 1-2922
RA Margaria P., Ciuffo M., Turina M.;
RT ;
RL Submitted (26-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL IVV, CNR, Strada Delle Cacce 73, Torino, TO 10135, Italy
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FH Key Location/Qualifiers
FH
FT source 1. .2922
FT /organism="Tomato spotted wilt virus"
FT /segment="S"
FT /specific_host="pepper"
FT /isolate="VE427"
FT /mol_type="genomic RNA"
FT /country="Spain"
FT /note="resistance-breaking strain able to infect pepper
FT carrying the Tsw resistance gene"
FT /db_xref="taxon:11613"
FT gene 86. .1492
FT /gene="NSs"
FT CDS 86. .1492
FT /codon_start=1
FT /gene="NSs"
FT /product="nonstructural protein"
FT /note="putative silencing suppressor"
FT /protein_id="ABD38702.1"
FT /translation="MMSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQT
FT QLYSDSRSKSSFGYTAKVGDLPCEEEEILSQHVYIPIFDNIDFSINIDDSVLALSVCSN
FT TVNANGVKHQGHLKVLSPAQLHSIGSIMNRSDITDRFQLQEKDIIPNDRYIEAANKGSL
FT SCVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSL
FT LMSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLS
FT IACIPNHNSVETALNITVICKHQLPIRKCKAPFELSMMFSDLKEPYNIVHDPSYPQRIV
FT HALLETHTSFAQVLCNNLQEDVIIYTLNNHELTSGKLDLGERTLNYSEDAYKRKYFLSK
FT TLECLPSNIQTMSYLDSIQIPSWKIDFARGEIKISPQSISVAKSLLKLDLSGIKKKESK
FT IKEAYASGSK"
FT gene complement(1995. .2771)
FT /gene="N"
FT CDS complement(1995. .2771)
FT /codon_start=1
FT /gene="N"
FT /product="nucleocapsid"
FT /protein_id="ABD38703.1"
FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI
FT KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLTELA"
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SQ Sequence 2922 BP; 925 A; 550 C; 472 G; 975 T; 0 other;
dq376185 Length: 2922 06-MAR-2006 Type: N Check: 800 ..
1 agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat
51 cacaatactg taataagaac acagtaccaa taaccatgat gtcttcaagt
101 gtttatgagt cgatcattca gacaagagct tcagtctggg gatcaactgc
151 atctggtaaa gctgttgtag attcttactg gattcacgaa cttggtactg
201 gttctcaact agttcagacc cagctgtatt ctgattcaag aagcaaaagt
251 agctttggct atactgcaaa agtaggggat cttccttgtg aagaagaaga
301 gattctttct cagcatgtgt atatccctat ttttgataat attgatttta
351 gcatcaatat tgatgactct gttctggcac tatctgtttg ctcaaataca
401 gtcaatgcta acggagtgaa acatcaaggt catttgaagg ttttgtctcc
451 tgctcagctc cactctattg gatctatcat gaacagatct gatattacag
501 accgattcca gctccaagaa aaagacataa ttcctaatga cagatacatt
551 gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa
601 gatcgagatg tgctataatc aagctttagg caaagtgaat gttctatctc
651 ctaacagaaa tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat
701 caagttgaaa gcaacaacag aactgtgaat tctcttgcag tgaaatctct
751 gctcatgtca gcagaaaaca acatcatgcc taactctcaa gcttttgtca
801 aagcttccac tgattctcat ttcaagctga gcctctggct aagggttcca
851 aaggttttga agcagatttc cattcagaaa ttgttcaaag tcgcaggaga
901 tgagacaaat aaaacatttt atttatctat tgcctgcatt ccaaaccata
951 acagtgttga gacagcttta aacattactg ttatttgcaa gcatcagctt
1001 ccaattcgta aatgtaaagc tccttttgaa ttatcaatga tgttttctga
1051 tttaaaggag ccttacaaca ttgttcatga tccttcatat ccccaaagga
1101 ttgttcatgc tttgcttgaa actcacacat cttttgcaca ggttctttgc
1151 aacaacttgc aagaagatgt gatcatctac accttgaaca accatgagct
1201 aacttctgga aagctagatt taggtgaaag aaccttgaat tacagtgaag
1251 atgcctacaa aaggaaatat ttcctttcaa aaacacttga atgtcttcca
1301 tctaacatac aaactatgtc ttatttagac agcatccaaa ttccttcctg
1351 gaagatagac tttgccaggg gagaaattaa aatttctccg caatctattt
1401 cagttgcaaa atctttgtta aagcttgatt taagcgggat caaaaagaaa
1451 gaatctaaga ttaaggaagc atatgcttca ggatcaaaat gatcttgcta
1501 tgtccagctt ttcctaatta tgttatgttt gttttctttc tttacttata
1551 attattcctc tgtttgtcat ttctttcaaa ttcctcctgt ctagtagaaa
1601 ccataaaaac aaaaataaaa ataaaataaa atcaaaataa aataaaaatc
1651 aaaaaatgaa ataaaaacaa caaaaaaata aaaaacaaaa aaccaaaaaa
1701 gatcccgaaa gggacaattt tggccaaatt tgggttttgt ttttgttttt
1751 tgttttttgt tttttgtttt tatttttatt tatttatttt tattttattt
1801 attttatttt tgtttttatt ttatgttttt tgttgttttt gttattttgt
1851 tatttattaa gcacaacaca cagaaagcaa actttaatta aacacactta
1901 tttaaaattt aacacactaa gcaagcacaa gcaataaaga taaagaaagc
1951 tttatatatt tataggcttt ttataattta acttacagct gcttttaagc
2001 aagttctgtg agtttcgcct gttttttaac cccaaacatt tcatagaact
2051 tgttaagagt ttcactgtaa tgttccatag caatacttcc tttagcatta
2101 ggattgctgg agctaagtat agcagcatac tctttcccct tcttcacctg
2151 atcttcattc atctcaaatg ctttgctttt cagcacagtg caaacttttc
2201 ctaaagcttc cctggtgtca tacttctttg ggtcgatccc gaggtccttg
2251 tattttgcat cctgatatat agccaagaca acactgatca tctcaaagct
2301 atcaactgaa gcaataagag gtaagctacc tcccagcatt atggcaagcc
2351 tcacagactt tgcatcatca agaggtaatc cataagcttg aatcaaaggg
2401 tgggaagcaa tcttagattt gatagtattg agattctcag aattcccagt
2451 ttcctcaaca agcctgaccc tgatcaagct atcaagcctt ctgaaggtca
2501 tgtcagtggc tccaatcctg tctgaagttt tctttatggt aattttacca
2551 aaagtaaaat cactctgctt aataaccttc attatgctct gacgattctt
2601 caggaatgtc agacatgaaa taacgctcat ctttttgatc tggtcaaggt
2651 tttccagaca aaaagtcttg aagttgaatg ctaccagatt ctgatcttcc
2701 tcaaactcaa ggtctttgcc ttgtgtcaac aaagcaacaa tgctttcctt
2751 agtgagctta accttagaca tgatgatcgt agaagttgtt atatgctctg
2801 accgtatgtg attcaaggtg caaaagtgca actctgtatc ccgcagtcgt
2851 ttcttagggt tttaatgtga tgatttgtaa gactgagtgt taaggtttga
2901 ataaaattga cacaattgct ct