Sequence of DPV Impatiens necrotic spot virus
Impatiens necrotic spot virus segment L, complete sequence.
ACC No: DQ425094
Dated: 2006-03-28 | Length: 8780 | CRC: 1824070506
ID DQ425094 standard; genomic RNA; VRL; 8780 BP.
XX
AC DQ425094;
XX
SV DQ425094.1
XX
DT 28-MAR-2006 (Rel. 87, Created)
DT 28-MAR-2006 (Rel. 87, Last updated, Version 1)
XX
DE Impatiens necrotic spot virus segment L, complete sequence.
XX
KW .
XX
OS Impatiens necrotic spot virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN [1]
RP 1-8780
RA Finetti-Sialer M.M., Pasciuto M., Gallitelli D.;
RT "Complete nucleotide sequence of Impatiens necrotic spot virus tomato
RT isolate found in Apulia (Italy)";
RL Unpublished.
XX
RN [2]
RP 1-8780
RA Finetti-Sialer M.M., Pasciuto M., Gallitelli D.;
RT ;
RL Submitted (01-MAR-2006) to the EMBL/GenBank/DDBJ databases.
RL Protezione Piante e Microbiologia Applicata, Universita degli Studi di
RL Bari, Via Amendola 165/a, Bari, BA 70126, Italia
XX
FH Key Location/Qualifiers
FH
FT source 1. .8780
FT /organism="Impatiens necrotic spot virus"
FT /segment="L"
FT /mol_type="genomic RNA"
FT /country="Italy"
FT /isolation_source="systemically infected leaves"
FT /virion
FT /db_xref="taxon:11612"
FT gene complement(148. .8745)
FT /gene="L"
FT CDS complement(148. .8745)
FT /codon_start=1
FT /gene="L"
FT /product="L protein"
FT /note="RNA-dependent RNA polymerase"
FT /protein_id="ABD93455.1"
FT /translation="MNNYKARLLIENSVTLLSSIDDCIKSNLELSRDLHKKNPDEISED
FT IIINNNAKNYEALRTLIARITRDGEGIETGLATVDMKKISEDMTLLEQKYLETELARHD
FT MFGELVSRHLHLRPKKRHDVEIEHAVREYFEELSKKECSNRLSEEDFKKVSKEYVATNA
FT TPDNFVIYKESKSGPLCMMIYDWKISVDAKTEAKTTEKYYKNIRKSLKDVKVKGKSFLE
FT EHPIFISIVILKPIGSMPIVVTTSRVLEEFEDSESALHANRLRYASQSRLVGVSNIGQI
FT IGTTPTVVREFYADTQKLKIEFRSILGEEFGSKDIFFSHWTNKYKDRDPTQIAHSEDLE
FT KIIESMVTDDISREEIVHFMFGNFCLRIETMNDQHIADRFNGYRSSCVNLNVEPKKDIS
FT ELKDHLLSTKGLWESLYDHHLIKVMDRIKMKKQKEKIIPDIMTAFNLNAEEYEKKYPNC
FT FTSDLSETKTNFSVTWSPCTDMVELGNQDYNNAVIDRFRKAFLSNPRIRYNSAYSKEMN
FT VTSKAKDVTELVRSCLTTLSCDTSGMDSQQLEDEVDISTGGIKVERTSKSQEWIKKNDC
FT LTRNRNEFNMRETSKDNKVIYFKGLSVMNVSMSKKKRIIKHEELKEKITKGLEYDTSER
FT QYDPNDDYVSLDLSSFTHAKKLIRHDNEESLEWCSQIQDGLFVLHNSDIRENCKVATVY
FT NNYTKNPENLFTQSTIIKTEMETCKKINKLCNDLAIYNYAEDMMQISKGLMVADRYMTK
FT ESFKILTTSNTSMLVLAFKGDGLNTGGSGVPYILVHMVEETLSEQFSVCYTKEIYSHFS
FT FGSHVVYIMRPQRLNQVRLLSLFKSPSKVPVCFAQFSKKAHELEGWLKIKDMQEVQTLS
FT MSSNVRRIMRNIVFSSVMIGTVTKLSRMGIFDFMRYAGFLPLSDYSNIKEYIQDKFDPD
FT ITNVADMFFVEGIKKLLLKMENLNLSTSAKPVVIDHENDVIGGITNLNIKCPITGATLK
FT TLEDLYNNVYLAIYMMPKSLHNHFHNLTSLLNVPAEWELRFRKEMGFTLFEDIYPKQKM
FT FQDNELFSINGVLNLKSLSDYYASTVENVGLMRTEIENKEDFLSPCYKISTLKSSKKCS
FT QSNIICSDDIINCLQEVNVRLLEDLSPKNLAILKGLLRTLHEDKNRLYEFFEDHSENPY
FT YLMEKMKTIKSSEKITTGKSKTSKFIRNNHPLTVETYLKTKLYYRNNITVLKSKKVSEE
FT LYDLIKQYHNIMDIDMESIMNLGKGLEGKKHTFLQMLEFVMSKAKNASDAIDFLVSVFE
FT KMQRTKTDREIYLMSMKVKMMLYFIEHTFKHVAQSDPSEAISISGDNKIRALSMLSMDT
FT ITSYNDILKNSKNKSKLAFLSADQSKWSASDLTYKYILAIIMNPILTSGECTLMVDCLM
FT MYVKLKKVCIPTDIFLGLRNSQEKFGTNETAIGLLTKGLSTNSYPVSMNWLQGNLNYLS
FT SVYHSCAMKAYHRMLESYKKCEFQTRWIVHSDDNATSLIADGDIDQMLTDFSSKSLSEM
FT VFRSIESHFKSFCITLNPKKSYASSSEVEFISERIVNGAIIPLYCRHLANCCTESSHIS
FT YFDDLMSLSINVTMLLRKGCPNEVIPFSYGAVQTQALSIYSMLPGEINDTMRICKKAGV
FT NLEHNEIPTNLGGWLTANVESLSLLGPSSNDQTIYYNIIRDFLKKDDFEQVKQSTSSER
FT FLDLRFEELKQKKEKDKLELNDKKMIFLMNLFEQSSVSEDSDVLNIGMKFQTMMTQIIR
FT LPQFINENALSKMSSYNDFCKLYPHLRKNQQLHNSTKEIKSDEDMLIEDLDDYEKIAPA
FT NEMEEVHEIMIKNPETILIAPLNDRDFLLSQLFLYTSPAKRNQLSSQSTEKLALNRILR
FT SKARTFINPDSDTKMTYDENLERKISTMKTLNEDSVSVFKTCINLVLKDVNFAMAIPTI
FT DNIYPCEARRRDNYNFRWFQTEKWIPVVEGSPGLVVMYSIYGSDYIEKLGLKNIPLTDN
FT SMVVLTSTFGSSLMLEDVKYYVKGLEVFETEEFQNSNSCQRAVKACNYMITAQNRLLAI
FT NTCFSRKNFPFYSKFNLGRGFVSNTLALMSSIYSKEESFHFMPNVHFKIDKSIRAIINA
FT QQDLNLERILDTAVYISDKIQAIFPDITRFDIMTILKNVCIDSVSIWDTLDSKMDKINR
FT AMERKMTTSNILLSHNSELNTIQKQIIWLYNMGLCSKKTLNFVIRYIRRSDVRYVRTEE
FT QDSFGNYVSGTVYKIGIMNQNNYVQLMASETDIAISLRTPYDIRDERDMLYSAHKDSIE
FT KLLSKFLFDKGNVIRSKQSQTVFLNPGQACLRTTTDGKLIAKVNPTPKLLKVANVKPIM
FT DINYENVNSDVWSIIESQKQIDLRLPETGECYSEMYKTIDSEQGLIHEMKSNLIRSLTF
FT INTFADLNESVYSIDDEVTRETIFDFIDSIRNDCLEGLETCKNVEEYEEFLDTHGFRET
FT VSLFKNMIESLESLDAEYSPIFLNITDKYQKFSEDLGNFKSMLLMLKYSLVNDASGFKS
FT YRATGAHAIDLTMKKHIEIGEFNLLGLIQLIKACESCHNSDSILNLVSLRNVLSKTYTV
FT SSRKIQLYYDINLQNDLMERSYDFKTLVLPDINLSDYSKEILKENGFVVSGENIKIDRE
FT IGDEDFVGLASFNVMRLDEEQMYDEIVKDMKIKRKKKGYLFPSNTLILSEMIKFLINGI
FT KGTSFDVESLLRNSFNVTIFAGSRLGKVSTSVPSLKIYSTVFMEYEKSDCPLYEISECL
FT EGFLKITKSEISEPILEGKLKKVLIQLRNEKNKSKKLEVFRAIYGFLSNNPLCLTDRTL
FT YGRMTFEDINRYIMETREIIINKIKELDDGDSSDSIEVLLNYLNEAN"
XX
SQ Sequence 8780 BP; 2604 A; 1641 C; 1253 G; 3282 T; 0 other;
dq425094 Length: 8780 28-MAR-2006 Type: N Check: 7126 ..
1 agagcaatca ggcacaacta aaatcttaat ctaaccatac taaatatata
51 aaactaatat taagatcaaa attatggcac tatttgctct ttcagttgta
101 tggctactta tgctagatgc tcatgtaaaa atatttttgg ttcttattta
151 gtttgcttca ttcaaataat tcaaaagtac ttctatgctg tctgaagaat
201 caccatcatc aagttctttg attttattta taattatttc tctagtttcc
251 atgatgtatc tgttgatatc ttcaaatgtc attctaccat ataatgttct
301 gtctgtcaag cataaagggt tatttgataa aaacccatat attgccctga
351 agacttccaa tttcttgctc ttgttttttt catttcttaa ttgaatcaaa
401 accttcttta attttccctc aagtatgggt tcagaaatct ctgatttggt
451 tatttttaaa aatccttcca ggcactctga tatctcatac aaaggacaat
501 cgcttttctc atattccatg aaaactgttg agtagatctt caaagaagga
551 acactagtgc ttactttccc taatctgctt ccggcaaaaa tagtcacatt
601 gaaactgttt ctaagcaaac tctctacatc aaaactagtt ccttttattc
651 catttatcaa gaattttatc atttcgctaa gtatgagagt gttggaagga
701 aacaaatatc ctttcttttt tctttttatt ttcatatctt tcactatttc
751 atcatacatt tgctcttcat ccaatctcat gacattaaag ctagctagac
801 caacaaaatc ttcatcacca atctctctat ctatttttat gttctcacca
851 gaaacaacaa aaccattttc tttcagtatt tcctttgaat aatcagacag
901 attaatatct ggtaaaacca atgtcttgaa atcataactc ctctccatca
951 aatcgttctg taagtttata tcataatata gttggatttt cctactagaa
1001 acggtatatg ttttgcttag aacatttctc aagctcacta gattcaatat
1051 agaatcacta ttatggcaag actcgcaagc tttgatcaac tgtatcaagc
1101 ctaataagtt gaattctcct atctctatat gttttttcat tgttaaatca
1151 attgcatgtg caccagtagc tctgtaactt ttgaagccag aagcatcatt
1201 cactagagaa tacttcaaca tcaacaacat tgacttgaaa tttcctaaat
1251 cctcggagaa tttttgatac ttgtcagtta tattcaagaa tatagggcta
1301 tattcagcat ccaatgactc taagctctct atcatgtttt taaaaaggct
1351 aacagtttct ctaaacccgt gggtgtccaa aaattcttca tactcttcaa
1401 catttttgca agtttctaaa ccttctagac aatcattcct tatactatct
1451 atgaaatcaa aaatggtttc tcttgtgact tcatcatcta tagaataaac
1501 agattcattc agatctgcaa atgtgtttat aaaagtcaat gacctaatca
1551 aattagattt catttcatgg atcaaaccct gctccgaatc aattgtttta
1601 tacatttcag agtaacattc acctgtttct ggaagtctta aatcaatttg
1651 tttttgactc tctattatag accaaacatc agagttcaca ttttcataat
1701 tgatatccat tattggtttt acattggcaa ctttcagcaa tttaggagtc
1751 ggatttactt ttgcaataag cttaccatca gttgttgttc ttagacaagc
1801 ttggcctggg tttaggaaaa ctgtttggct ctgtttggat cgtatcacat
1851 tacctttgtc aaacaaaaat tttgataaaa gtttctcaat gctatcttta
1901 tgagcactgt atagcatatc cctttcatct cttatatcat atggtgttct
1951 caaagagatt gcaatatctg tttcagaagc catcagttgt acataattat
2001 tttggttcat gatgccaatc ttataaactg tccccgaaac atagtttcca
2051 aaactgtctt gttcttctgt cctaacatat ctgacatcac ttcttcttat
2101 atatcttata acaaagttca gtgttttttt agaacataga cccatattat
2151 acaaccaaat tatttgtttc tggattgtgt ttaattcact gttatgggac
2201 agaagaatgt tagatgtagt cattttcctt tccatagcac gatttatttt
2251 atccattttt gaatctaatg tatcccaaat ggaaacactg tcaatgcaaa
2301 cgtttttcag aatagtcatg atgtcaaatc tagttatgtc tgggaaaata
2351 gcttgtatct tatcagaaat gtacacagca gtgtccaaaa ttctctccaa
2401 atttagatct tgttgtgcat ttattatagc tcttatagat ttgtctattt
2451 taaaatgcac atttggcata aaatgaaatg attcttcttt actgtaaatg
2501 cttgacatta atgccaatgt gtttgacaca aagcctctgc ctaaattgaa
2551 tttagaatag aaagggaaat tttttcttga aaaacacgtg ttaatagcaa
2601 gcaacctatt ttgtgctgtt atcatataat tgcaagcttt cactgctctc
2651 tggcagctat tagaattttg gaattcttca gtctcgaata cttcaagacc
2701 tttgacataa tattttacat cctccagcat caagctggat ccaaatgtgc
2751 tagttaagac aaccatgcta ttatctgtca agggtatatt tttcagccct
2801 aatttttcta tatagtcaga accatatatt gaatacatca caactaatcc
2851 tggtgaacct tctacaactg gtatccattt ttctgtttga aaccagcgga
2901 aattgtagtt atctcttctc ctggcttcac atggataaat gttatcaata
2951 gttggtatag ccatagcaaa attcacatcc ttcagcacca aatttatgca
3001 tgttttgaat acacttacag agtcctcatt caatgttttc attgtgctaa
3051 ttttcctttc taagttttca tcataggtca tttttgtatc agaatctggg
3101 tttatgaagg tcctagcttt tgatcttaaa atcctgttta atgccaattt
3151 ctcagtagat tgacttgaca attgattcct ctttgcaggg cttgtgtaca
3201 gaaataattg gcttaacaaa aaatctctgt catttaatgg tgctattaaa
3251 atagtttcag ggttctttat cattatttca tgcacctcct ccatctcatt
3301 tgcgggagct attttctcat aatcatctaa atcttcaatc agcatgtctt
3351 cgtcagactt gatttcctta gtgctattat gaagttgttg attctttctt
3401 agatgagggt ataatttgca aaaatcatta taactggaca tttttgacaa
3451 agcattttca tttataaact gaggcaacct aattatttga gtcatcattg
3501 tctgaaattt catccctata tttaaaacat ccgaatcttc agatacagaa
3551 gactgctcaa atagattcat taaaaagatc atctttttat cattgagctc
3601 taatttatct ttttcttttt tctgtttaag ttcttcaaat cttaaatcaa
3651 ggaacctttc agaggatgtg ctttgtttta cttgctcaaa atcatctttc
3701 tttaagaaat ctctgattat attgtaatag atagtctgat cattagatga
3751 tggacctaat agtgacaatg attccacatt tgcagttaac catccaccta
3801 gatttgtggg tatttcatta tgttccagat tcacacctgc tttcttgcat
3851 atcctcatgg tatcattaat ttcacctggt aacatagaat aaatggataa
3901 tgcttgtgtt tgaacagctc cataagaaaa tggaatgact tcatttgggc
3951 atcctttcct taaaagcatt gttacgttta tacttagtga cattaagtca
4001 tcaaaataac ttatatgtga cgattcagtg cagcaattgg ctaaatgtct
4051 gcaatatagg ggtataatag ctccatttac tattctttcg gagataaatt
4101 caacttctga agaggaagca tagctttttt taggattcag agttatgcaa
4151 aaactcttaa aatgtgattc aatgcttcta aaaaccattt cagaaagact
4201 tttgctgctg aaatctgtta acatttggtc aatatcacca tcagcaatta
4251 aagatgttgc attgtcatcg gaatggacaa tccatcttgt ttggaactca
4301 cactttttgt aactttcaag cattctatga taagctttca tagcgcaaga
4351 atgataaaca gaagataaat aattaagatt cccttgtaac caattcatgc
4401 ttactggata agaattagta gaaagacctt tggtgagcaa cccaatggct
4451 gtttcattag tcccaaattt ctcttgtgaa ttccttaaac ctaaaaaaat
4501 gtctgttgga atgcacacct ttttcaattt cacatacatc atcagacaat
4551 caaccattaa tgtgcactca cctgatgtca atataggatt cattataatg
4601 gccaatatat acttgtatgt taagtcagaa gctgaccact tagattgatc
4651 agccgataaa aatgctaact tagatttgtt cttgctgttt ttcaatatat
4701 cattgtatga tgttatcgtg tccatcgaca acatggataa tgctcttatt
4751 ttattgtcac cactaatgga tatggcctct gaagggtcac tttgggcaac
4801 atgcttgaaa gtatgttcta tgaaataaag catcattttt actttcatgc
4851 tcatgaggta aatttctcta tctgttttag ttctttgcat cttttcaaat
4901 acagaaacta aaaaatctat tgcatcagaa gcatttttag ctttagacat
4951 gacgaattct aacatttgta ggaaagtgtg ttttttccct tctagacctt
5001 tccctaaatt cattatagat tccatgtcta tgtccatgat gttatggtat
5051 tgtttgatta agtcatacag ttcttcagac actttctttg atttaagaac
5101 agttatatta ttcctgtaat ataattttgt cttcaaatat gtttccactg
5151 ttaaaggatg gttattccga atgaacttag atgtttttga tttacctgtt
5201 gttatttttt cagaagattt gattgtcttc attttttcca taaggtaata
5251 agggttttca gagtgatctt caaaaaattc atacaacctg tttttatctt
5301 catgaagagt tctaagcaaa cctttcaaga ttgccaaatt ttttggactc
5351 aaatcttcca gtaatctaac atttacttct tgaagacagt taattatatc
5401 atctgaacaa attatattag attgagaaca cttttttgaa gatttcaaag
5451 tggaaatctt gtaacaagga ctcaaaaagt cttctttgtt ttcaatttct
5501 gttctcatca gcccaacatt ttcaacagtc gatgcgtagt aatcagaaag
5551 agattttaag ttcaggacac cgtttataga aaataactcg ttgtcttgga
5601 acatcttttg ttttggatag atatcttcaa ataaagtaaa ccccatttct
5651 tttctgaacc ttaactccca ttctgcaggt acatttagta ggcttgtcaa
5701 attatggaaa tgattgtgga gtgatttagg catcatatat attgccaaat
5751 aaacattgtt gtataaatct tctaatgtct taagagtagc acctgtgatt
5801 gggcatttta tgttcaaatt tgtgattcct cctatcacat cattctcatg
5851 atcaataacc acaggttttg cacttgtact taaatttaag ttttccattt
5901 tgagaagaag cttttttatt ccttcaacaa agaacatgtc agcaacattt
5951 gttatgtctg gatcaaattt atcttgtatg tattctttta tatttgaata
6001 gtctgataaa ggtaggaatc ctgcatatct catgaagtca aagattccca
6051 tcctgctaag ctttgtgact gttcctatca tgacagaaga aaagacaata
6101 tttctcatta ttcttcttac attagagctc atgcttagtg tttgcacttc
6151 ttgcatatct tttattttca accacccttc taattcatga gcttttttgg
6201 aaaactgagc aaaacaaact ggaactttgc tgggagattt gaaaaggcta
6251 agaagtctaa cttggttcag cctttgcggc ctcataatat atacaacatg
6301 actaccaaat gagaaatgac tatatatttc ttttgtgtaa cacacactaa
6351 actgctcaga tagagtctct tccaccatgt ggactagtat gtaaggaact
6401 cctgaccctc ctgtgtttag cccatctcct ttaaaagcca aaactagcat
6451 gctagtattt gaggttgtca atatcttgaa actttcttta gtcatgtacc
6501 tgtcagcaac catcaaacct ttagatattt gcatcatgtc ctcggcataa
6551 ttgtatatag ctagatcatt gcataatttg tttatctttt tacaagtttc
6601 catttctgtt tttatgatag ttgattgagt gaaaagattt tcaggatttt
6651 ttgtataatt gttgtaaaca gtagccactt tgcaattttc tctaatgtct
6701 gagttatgaa gaacaaataa tccatcttgg atctgtgagc accattctaa
6751 gctctcttca ttatcatgtc tgataagctt ctttgcgtgg gtgaatgaag
6801 ataaatccaa actcacataa tcatcattag ggtcatactg tctctctgat
6851 gtatcatatt ctagaccttt tgtgattttc tcttttagtt cctcatgctt
6901 tattatcctt ttctttttac tcatgctcac gttcataaca ctcaaacctt
6951 taaaatagat cactttatta tctttactgg tttccctcat gttaaactcg
7001 tttctatttc tagtcaaaca atcatttttc ttaatccact cttgtgattt
7051 gctagttctt tccactttta taccacctgt gcttatgtca acttcgtctt
7101 ccaattgctg ggagtccatt ccacttgtat cacagcttag agttgttaga
7151 caggacctga caagttcagt cacatccttt gctttgctgg tcacattcat
7201 ctctttgcta taagctgaat tatatctgat cctaggattg ctaaggaaag
7251 ctttcctgaa ccgatcaata actgcattat tataatcttg gtttcctagt
7301 tccaccatat cagtgcaagg tgaccaagtg acagaaaaat ttgtctttgt
7351 ttcagagaga tcacttgtga aacaatttgg gtatttcttt tcatactctt
7401 cagcattcaa gttgaatgca gtcattatgt caggtataat cttttctttt
7451 tgttttttca tttttatcct atccataacc ttaatcaaat gatgatcata
7501 taaagattcc cacaaaccct tagtagataa cagatgatct tttaactctg
7551 aaatgtcttt cttaggttct acattcagat tcacacaaga ggatctatac
7601 ccattaaatc tatcagcaat atgttgatca ttcattgtct ctatacgcaa
7651 gcaaaaattc ccaaacataa aatgaacaat ttcttcccta cttatgtcat
7701 ctgttaccat tgattcaatt atcttctcca aatcttctga atgagcaatc
7751 tgtgttggat ctctgtcttt atatttattt gtccaatgac taaaaaatat
7801 gtctttagag ccgaactctt cacccagtat gctcctaaat tcaattttta
7851 acttttgagt gtctgcataa aattctctaa caacagtagg agttgtgcca
7901 attatctggc ctatgttaga caccccgaca agccttgatt ggcttgcgta
7951 tctcaaccta ttggcatgca atgcagattc tgaatcttca aattcctcta
8001 agactctgct agtcgtgacc actataggca tagatccaat aggtttaaga
8051 ataacaatag agatgaatat aggatgctct tccaggaaag atttaccctt
8101 gactttcaca tctttcaatg atttccgtat gtttttgtaa tatttctctg
8151 ttgttttagc ttctgtttta gcatcaacag aaattttcca atcatagatc
8201 atcatgcaaa gaggaccact cttagattct ttgtatatca caaagttatc
8251 aggagtagca ttggtagcaa catattcttt actgaccttt ttgaaatctt
8301 cttcagacag tctgttagaa cattctttct tgcttagctc ttcaaaatac
8351 tctctgacag catgctctat ctccacatca tgtctttttt taggtcttaa
8401 atgcaaatgt cttgaaacca gctcaccgaa catatcatgt ctagctagtt
8451 cagtttcaag atatttctgc tcaaggagag tcatgtcttc agatatcttt
8501 ttcatgtcaa ctgtagccaa tcctgtttca atcccttcac catccctagt
8551 aattcttgct attagagttc ttaaagcttc atagttttta gcattgttat
8601 ttataataat atcttcactt atttcatctg ggttcttttt atggaggtct
8651 ctgcttaact ctaaattgct tttgatacaa tcatcaattg acgatagtaa
8701 agtaacagaa ttttctatta ataatcttgc tttgtaattg ttcattctga
8751 ataaattgtt gttgcctgat tgctctaatc