Sequence of DPV Impatiens necrotic spot virus
Impatiens necrotic spot virus segment M, complete sequence.
ACC No: DQ425095
Dated: 2006-03-28 | Length: 4962 | CRC: -1055206008
ID DQ425095 standard; genomic RNA; VRL; 4962 BP.
XX
AC DQ425095;
XX
SV DQ425095.1
XX
DT 28-MAR-2006 (Rel. 87, Created)
DT 28-MAR-2006 (Rel. 87, Last updated, Version 1)
XX
DE Impatiens necrotic spot virus segment M, complete sequence.
XX
KW .
XX
OS Impatiens necrotic spot virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN [1]
RP 1-4962
RA Finetti-Sialer M.M., Pasciuto M., Gallitelli D.;
RT "Complete nucleotide sequence of Impatiens necrotic spot virus tomato
RT isolate found in Apulia (Italy)";
RL Unpublished.
XX
RN [2]
RP 1-4962
RA Finetti-Sialer M.M., Pasciuto M., Gallitelli D.;
RT ;
RL Submitted (01-MAR-2006) to the EMBL/GenBank/DDBJ databases.
RL Protezione Piante e Microbiologia Applicata, Universita degli Studi di
RL Bari, Via Amendola 165/a, Bari, BA 70126, Italia
XX
FH Key Location/Qualifiers
FH
FT source 1. .4962
FT /organism="Impatiens necrotic spot virus"
FT /segment="M"
FT /mol_type="genomic RNA"
FT /country="Italy"
FT /isolation_source="systemically infected leaves"
FT /virion
FT /db_xref="taxon:11612"
FT CDS 86. .997
FT /codon_start=1
FT /product="nonstructural protein"
FT /protein_id="ABD93456.1"
FT /translation="MNSLFKSLRSSSSRELDHPRVATTLSKQGADIVVHNPSANHNNKE
FT VLQRAMDSSKGKILMNNTGTSSLGTYESDQISESESYDLSARMIVDTNHHISSWKNDLF
FT VGNGDKSATKIIKIHPTWDSRKQYMMISRIVIWICPTIADPDGKLAVALIDPNKSVNAR
FT TVLKGQGSIKDPICFVFYLNWSIPKVNNTSENCVQLHLLCDQSYKKDVSFASVMYSWTK
FT EFCDSPRADLDKSCMIIPINRAIRAKSQAFIEACKLIIPKGNSEKQIRRQLAELSANLE
FT KSVEEEENVTDNKIEISFDNEI"
FT CDS complement(1463. .4795)
FT /codon_start=1
FT /product="G2-G1 polyprotein"
FT /protein_id="ABD93457.1"
FT /translation="MALKETDAKIHVERGDHPEIYDEAYYDRSVDHKNEILDTLAEMLQ
FT NATGKTLRPTRDTQTVLANNEVPQSPSGLSSTPTTISVMDLPNPCLNASSLTCSIKRVS
FT TFNVYYQVESNGVIYSCISDTITKLGNCEGSSELPRSFETVPVVPITKIDNKRKLSIGT
FT KFYIIESLENYNYPIMYNSRPTNGTVSLQSVKFSGDCKISKTNIVNSYTVSLTTPEKIM
FT GYVVKREGSDMSHSIISFSGSVSLTFTEENMDGKHNLLCGDKSSKVPLVDKRVRDCIIK
FT YSKNIYKQTACINFSWLRLIIIALIVYFPIRYLVNKTSKTLFLWYDLLGLITYPVLLLI
FT NYLWSYFPLKCKVCGNLCLVTHECSKLCICNKNKTSEEHSEECPIITRTAEKNKKYNWA
FT SIEWFHLIVNTKISLSFLKAVTETLIGFLILSQMPMSMAQTAQCLDSCYYVPGCDRFVT
FT NRYDKCPEKDQCFCAIKENSIVESNFLTNVVTEGPMDCIPYQECKGRITENALVTFVKC
FT RFGCEYASIFQSKPLDNGFLEYSGDTLGLNAVNLHFMKRLRNGIIDFYNKTEKYGYISG
FT DALKSNESDIPESIFPRKSLIFDSVIDGKYRYMIEESLLSGGGTVFSLNDKSSSTAQKF
FT VVYIKKVGIQYDVSEQYTTAPIQSTHTDFFSTCTGKCSDCRKEQPITGYQDFCITPTSY
FT WGCEEVWCLAINEGATCGFCRNVYDMDQSFRIYSVIKSTIKSEVCVSGFVGAKCFTVSE
FT EVPSESGYFQADILVDFHNDGLTIGQLIAHGPDSHVYAGNIARLNDPSKMFGHPQLSHQ
FT GDPIFSKKTLDTNDLSWDCSAIGKKTVTIKSCGYDTYRFKTGLNQISDIPVQFTDQNSF
FT YMEKIFSLGKLKIVLDLPSELFKTAPKKPILSSVSLSCKGCFLCSQGLRCAASFISDIT
FT FSARLTMKQCSLSTYQIAVKKGANKCNLTMFCTSNPEKQKMIIEPEGDKSYSVEALVDS
FT VTVLEPENIIDQNDQYAHEEQQYNSDTSVWSFWDYVKSPFNFIASYFGSFFDTVRVVLL
FT ILFVFALAYLCSIVATMCRDYVRNKSYKTKYIEDINDYSLVSTSSDRDTITRRRPPLDF
FT SGI"
XX
SQ Sequence 4962 BP; 1658 A; 850 C; 819 G; 1635 T; 0 other;
dq425095 Length: 4962 28-MAR-2006 Type: N Check: 5667 ..
1 agagcaatca gtgcatcaaa attatatcta gccgaattca atcattatct
51 tctcaatatt ttaattctta atctaccgtc cagagatgaa tagtttgttt
101 aaatcactaa gatcatctag cagcagggag ctagatcacc ctagggttgc
151 aactacccta tctaaacaag gagcagatat tgttgtacac aacccttctg
201 ctaatcataa caacaaggaa gttctccaaa gagccatgga tagctctaaa
251 gggaagattt tgatgaacaa tacaggcacc tcatcactag gcacatatga
301 gtctgaccag atatctgaat cagagtcgta tgatctttct gctagaatga
351 ttgttgatac aaatcatcat atctccagct ggaaaaatga tctttttgta
401 ggtaatggtg ataaatctgc aaccaagata attaagatac atccaacctg
451 ggatagcaga aaacaataca tgatgatctc aaggatagtt atctggatat
501 gtcctactat agctgatcct gatgggaaat tggctgtagc tttaattgat
551 cctaacaaga gtgttaatgc cagaactgtt ttgaaagggc aaggaagcat
601 taaagatccc atatgttttg ttttttatct aaattggtcc attccaaaag
651 ttaacaacac ttcagaaaat tgtgttcagc ttcatttatt atgtgatcaa
701 agttacaaga aagatgtctc atttgctagt gtcatgtatt cttggacaaa
751 agaattctgt gattcaccaa gagcagatct ggataaaagt tgcatgataa
801 tacccatcaa tagagctatt agagccaaat cgcaagcctt cattgaagcc
851 tgcaagttaa tcatacctaa aggcaattct gaaaagcaaa ttagaagaca
901 actagcagag ctaagtgcta atttagagaa atctgttgaa gaagaggaga
951 atgttactga taacaagata gagatatcat ttgataatga aatctaaata
1001 tgttttcatt taataataaa taatatatat tgttcacaat atattgaatg
1051 tttaagtaaa caataaagca agataaaaac tatatatata tatatatata
1101 gaaatataaa atatatatgt atttgtgttt aaaacaaatc aaaaaccaaa
1151 aaggaaaata aaaaataaaa caaaaaacaa aaacaaaaaa caaaaacaaa
1201 caaaaagcaa aaatagaaaa aagaagaaaa accaaaaaaa ttgtaaataa
1251 ataaggctcc ggccagattt ggtctaagac ctttttattt gttttcatac
1301 attttatttg tttttgttag ttttttattt tattattttt atatattttt
1351 tatatagttt gctcatttaa cacttattta gacgaattaa attttatttg
1401 gttacagtta ttctacctta tttaatttag aacacatctg gtgtatattc
1451 caatgaattt aatcatatac cgctgaagtc tagaggaggt cttcttctag
1501 tgatggtgtc tctatcagaa gatgtggaaa ccagagaata atcattaatg
1551 tcttcaatat attttgtctt gtaagacttg tttctaacat agtctctgca
1601 cattgtggca acaatagagc agaggtaagc aagagcaaat acaaagagta
1651 tgagcaatac tactctgact gtatcaaaga aggatccaaa gtagcttgct
1701 ataaagttaa aagggctttt aacatagtcc caaaagctcc aaactgatgt
1751 gtcagaatta tattgctgtt cctcgtgtgc atattggtca ttttgatcaa
1801 ttatgttttc tggttccagc acagtaacag aatctacaag tgcctcaact
1851 gaatatgatt tgtctccttc tggttctata atcatttttt gtttttctgg
1901 gttagaagtg cagaacattg tcaagttaca cttattagca cctttcttta
1951 ctgctatctg gtatgttgac aatgaacatt gtttcatggt taacctagca
2001 gaaaaagtta tgtctgatat gaatgaggca gcacacctca gcccttggct
2051 acataagaaa catcccttac agcttaaaga gacagaactc aatataggct
2101 tttttggtgc agttttaaac aattcagaag gtagatccaa aacaatttta
2151 agcttaccta gactaaagat cttttccata taaaaactat tctggtcagt
2201 aaactgaact ggaatatccg atatttggtt caaacctgtt ttaaatctgt
2251 atgtgtcata accgcatgat tttattgtaa ctgttttttt accaattgct
2301 gagcaatccc aggacagatc gtttgtatct aatgttttct tagagaaaat
2351 gggatcacct tggtgtgaaa gttgaggatg accaaacatt tttgatggat
2401 catttaatct agctatgttt cccgcatata catgactatc aggtccatga
2451 gctatcagct ggcctattgt taaaccatca ttatggaaat ccactaatat
2501 atcagcctgg aaatatcctg attcagatgg gacttcctca gatacagtga
2551 aacactttgc tcccacaaat ccagatacac atacttcaga cttgattgtt
2601 gatttaataa cagaataaat cctgaaagat tgatccatat catacacatt
2651 tctacaaaac ccacaagtgg ctccttcatt gatagccaaa caccaaacct
2701 cttcacaacc ccagtaagat gttggtgtta tgcagaaatc ttgataccca
2751 gttattggtt gttcttttct gcagtctgag catttacctg tgcatgttga
2801 aaagaaatca gtgtgggtgc tttgtatagg agctgtggtg tattgttcag
2851 aaacatcata ctgtattcca acttttttaa tataaacaac aaacttctga
2901 gcagtgctgg aacttttgtc attaagagag aaaactgtgc ccccacctga
2951 taacaaagac tcttctatca tgtatctata ttttccatct atcaccgagt
3001 caaatatgag agattttctt gggaaaatgc tttcaggtat gtctgattca
3051 ttagatttaa gtgcatctcc agaaatgtat ccatattttt cagttttatt
3101 gtagaaatca attataccat tcctaagcct tttcatgaag tggagattca
3151 cagcattcaa tcccaatgtg tcaccagaat attctaagaa cccattatct
3201 aaaggcttgc tctggaaaat agaggcatac tcacaaccaa atctgcattt
3251 gacaaaagtt accaaagcat tttcagttat cctacctttg cattcttgat
3301 aaggtataca atccatagga ccttctgtca caacattggt tagaaagtta
3351 gattctacaa tagaattttc tttaatagca cagaaacact ggtctttttc
3401 aggacatttg tcatatctgt ttgtaacaaa gcggtcgcaa ccagggacat
3451 aataacagct atccaaacac tgagcagttt gagccataga cataggcatc
3501 tgtgacaaaa taagaaatcc tatcaaagtt tctgtgactg cttttaggaa
3551 agagaggctt atttttgtat taactatcaa atggaaccat tcaatgctag
3601 cccagttgta tttcttattc ttctctgctg ttctagttat tataggacat
3651 tcttctgagt gttcttcaga ggttttgttt ttgttacaaa tacataattt
3701 tgagcattca tgggttacca aacataaatt tccacagacc ttacatttca
3751 agggaaaata agaccataaa taatttatca gtagtagtac aggatacgtt
3801 atcaatccca gaagatcata ccatagaaac agtgttttag atgttttatt
3851 taccaagtac cttataggaa aatagacaat cagagcaatt atgatcaatc
3901 tgagccatga gaagttgata caagcagttt gtttgtaaat atttttggag
3951 tactttataa tacaatctct aactcttttg tccactaaag gaactttaga
4001 agacttgtca ccgcacaata ggttatgctt accatccata ttttcttctg
4051 tgaaagtcaa actaactgag ccggagaagc ttattatgga atgactcatg
4101 tcacttcctt ctcttttgac aacgtaaccc atgattttct caggtgtagt
4151 taatgaaact gtataagaat taactatgtt tgtttttgat attttacaat
4201 cacctgagaa tttcacactc tggagagaga ctgtgccatt agttggtcta
4251 gaattgtaca tgattggata attgtaattc tccaaacttt caattatata
4301 aaatttagtt cctatagata atttcctttt attatcaatt tttgttattg
4351 gtacaactgg aacagtttca aagcttcttg gcaattcaga agatccttca
4401 cagtttccca atttagttat agtgtcactg atacatgaat atataacacc
4451 attgctttct acttggtaat aaacattgaa tgttgaaact cttttaatgc
4501 tacaagtcaa acttgaagca tttaggcatg gatttggtaa atccataact
4551 gatatagttg ttggtgtaga agacaatcca ctcggagatt gaggtacctc
4601 attattggca agaacggttt gagtatctcg tgttggtcta agggttttac
4651 ctgttgcatt ctggagcatt tcggccagag tatctagaat ttcattttta
4701 tgatcgacag aacggtcata ataagcttca tcataaattt ctggatgatc
4751 gcccctttca acatgaatct ttgcatctgt ctcctttaat gccataaaag
4801 ataagataac agaagtaaca actagtgtac atacactaat tttaacaagt
4851 aactcgcaca tctttagaat tttcattcta aaaagtcgaa taacactagt
4901 tctaaaattg ctttatgagt ttgatctgtt gtatgtagag ttttgtttgc
4951 actgattgct ct