Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate P170RB putative truncated NSs and nucleocapsid genes, complete cds.
ACC No: DQ431238
Dated: 2006-03-28 | Length: 2930 | CRC: 960537877
ID DQ431238 standard; genomic RNA; VRL; 2930 BP.
XX
AC DQ431238;
XX
SV DQ431238.1
XX
DT 28-MAR-2006 (Rel. 87, Created)
DT 28-MAR-2006 (Rel. 87, Last updated, Version 1)
XX
DE Tomato spotted wilt virus isolate P170RB putative truncated NSs and
DE nucleocapsid genes, complete cds.
XX
KW .
XX
OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN [1]
RP 1-2930
RA Margaria P., Ciuffo M., Turina M.;
RT "Molecular characterization of resistance-breaking strains of Tomato
RT spotted wilt virus (Tospovirus, Bunyaviridae) infecting resistant pepper
RT carrying the TSW gene";
RL Unpublished.
XX
RN [2]
RP 1-2930
RA Margaria P., Ciuffo M., Turina M.;
RT ;
RL Submitted (03-MAR-2006) to the EMBL/GenBank/DDBJ databases.
RL IVV, Cnr, Strada delle Cacce 73, Torino, TO 10135, Italy
XX
FH Key Location/Qualifiers
FH
FT source 1. .2930
FT /organism="Tomato spotted wilt virus"
FT /specific_host="pepper"
FT /isolate="P170RB"
FT /mol_type="genomic RNA"
FT /country="Italy"
FT /isolation_source="glasshouse"
FT /note="able to overcome TSW resistance gene in pepper"
FT /db_xref="taxon:11613"
FT CDS 89. .805
FT /codon_start=1
FT /product="putative truncated NSs"
FT /protein_id="ABD92815.1"
FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ
FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT
FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS
FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPSFNQVESNNRTVNSLAVKSLL
FT MSAENNSKLPLILISN"
FT CDS complement(2003. .2779)
FT /codon_start=1
FT /product="nucleocapsid"
FT /protein_id="ABD92816.1"
FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI
FT KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA"
XX
SQ Sequence 2930 BP; 934 A; 545 C; 468 G; 983 T; 0 other;
dq431238 Length: 2930 28-MAR-2006 Type: N Check: 5027 ..
1 agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat
51 cacaatactg taataagaac acagtaccaa taaccataat gtcttcaagt
101 gtttatgagt cgatcattca gacaagagct tcagtctggg gatcaactgc
151 atctggtaaa gctgttgtag attcttactg gattcatgaa cttggcactg
201 gttctccact agttcaaacc cagctgtatt ctgattcaag aagcaaaagt
251 agctttggct atactgcaaa ggtagggaat cttccctgtg aagaagaaga
301 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta
351 gcattaatat tgatgactct gttctggcac tatctgtttg ctcaaataca
401 gtcaatacta acggagtgaa acatcaaggt catttgaaag ttttgtctcc
451 tgctcagctc cactctattg gatctaccat gaacagatct gatattacag
501 accgattcca gcttcaagaa aaagacataa ttcccaatga cagatacatc
551 gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa
601 gatcgagatg tgctataatc aagctttggg caaagtgaat gttttatccc
651 ctaacaggaa tgtccatgaa tggctgtaca gtttcaagcc aagtttcaat
701 caagttgaaa gcaacaacag aactgtaaat tctcttgcag tgaaatctct
751 gctcatgtca gcagaaaaca actcaaagct tccactgatt ctcatttcaa
801 actgagcctc tggctaaggg tcccaaaggt tctgaagcag gtctctattc
851 agaaattgtt caaagttgca ggagacgaaa caaataaaac attttatttg
901 tctattgctt gcattccaaa ccataacagt gttgagacag ctttaaacat
951 ttctgttatt tgcaagcatc agctcccaat tcgcaaatgt aaagctcctt
1001 ttgaattatc aatgatgttt tctgatttaa aggagcctta caacattgtt
1051 catgatcctt catatcctca gagaattgtt catgctctgc ttgaaactca
1101 cacatctttt gcacaagttc tttgcaacaa cttacaagaa gatgtgatca
1151 tctacacttt gaacaactat gagctaactc ctggaaagtt agatttaggt
1201 gaaagaacct taaattacag tgaagatatc tgcaaaagga aatatttcct
1251 ttcaaaaaca cttgaatgtc ttccatctaa cacacaaact atgtcttact
1301 tggacagcat ccaaatccct tcctggaaga tagactttgc caggggagaa
1351 attaagattt ccccacaacc tgtttcagtt gcaaaatctt tgttaaagct
1401 tgatttaagc gggatcaaaa agaaagaatc taagatcccg gaaacatatg
1451 cttcaggatc aaaataatct tgctgtttcc ggtttttcta attatgttat
1501 gtttattttc tttctttact tataattatt tctctgtttt gtcatttctt
1551 ttaagttcct cctgtttaat agaaaccata aacaaaaaat aaaataaaaa
1601 taaaatcaaa aatgaaacaa aaatcaaaaa atgaaacaaa aataaaaaat
1651 aaaaaatgaa ataaaaacaa caaaaaaatt aaaaacaaaa acccaaaaaa
1701 gatcccgaaa gggacaatct tggccaaatt tgggttttgt tttgtttttg
1751 ttttttgttt tttgttttta tttttatttt atttatttat tttattttat
1801 ttttattttt tattttgttt tttattttat gttttttgtt gtttttgtta
1851 ttttatttat ttattaagca caacacacag aaagcaaact ttaattaaac
1901 acacttattt taaatttaac acactaagca agcacaagca ataaagataa
1951 agaaagcttt atatatttgt agacttttcc ataatttaac ttacagctga
2001 ttttaagcaa gttctgcgag ttttgcctgt tttttaaccc cgaacatttc
2051 atagaacttg ttaagagttt cactgtaatg ttccatagca atacttcctt
2101 tagcattagg attgctggag ctgagtatag cagcatactc ttttcctttc
2151 ttcacctgat cttcattcat ttcaaatgct ttgcttttca gcacagtgca
2201 aacttttcct aaggcttctc tggtgtcata cttctttggg tcaatcccga
2251 ggtctttgta ttttgcatcc tgatatatag ccaagacaac actgatcatc
2301 tcaaagctat caactgaagc aataagaggt aagctacctc ccagcattat
2351 ggcaagcctc acagactttg catcatcaag aggtaatcca taggcttgaa
2401 tcaaagggtg ggaagcaatc ttagatttga tagtattgag attctcagaa
2451 ttcccagttt cctctacaag cctgaccctg atcaagctat caagccttct
2501 gaaggtcatg tcagtggctc caatcctgtc tgaagttttc tttatggtaa
2551 ttttaccaaa agtaaaatca ctttgtttaa taaccttcat tatactctga
2601 cgattcttca ggaatgtcag acatgaaata acgctcatct tcttgatctg
2651 gtcgaggttt tccagacaaa aagtcttgaa gttgaatgct accagattct
2701 gatcttcctc aaactcaagg tctttgcctt gtgtcaacaa agcaacaatg
2751 ctttccttag tgagcttaac cttagacatg atgattgtag aagttgttat
2801 atgctttgac cgtatgtaat tcaaggtgcg aaagtgcaac tctgtattcc
2851 gcagtcgttt cttaggattt taatgtgatg atttgtaaga ctgagtgtta
2901 aggtttgaat aaaattgaca caattgctct