Sequence of DPV Pelargonium flower break virus

Pelargonium flower break virus isolate GER1 clone 2 putative movement protein (p7), putative movement protein (p12), and coat protein (CP) genes, complete cds.

ACC No: DQ443021

Dated: 2006-08-01 | Length: 1828 | CRC: 804043824

                
ID   DQ443021; SV 1; linear; genomic RNA; STD; VRL; 1828 BP.
XX
AC   DQ443021;
XX
DT   06-APR-2006 (Rel. 87, Created)
DT   01-AUG-2006 (Rel. 88, Last updated, Version 2)
XX
DE   Pelargonium flower break virus isolate GER1 clone 2 putative movement
DE   protein (p7), putative movement protein (p12), and coat protein (CP) genes,
DE   complete cds.
XX
KW   .
XX
OS   Pelargonium flower break virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC   Carmovirus.
XX
RN   [1]
RP   1-1828
RX   PUBMED; 16873268.
RA   Rico P., Ivars P., Elena S.F., Hernandez C.;
RT   "Insights into the selective pressures restricting pelargonium flower break
RT   virus genome variability: evidence for host adaptation";
RL   J. Virol. 80(16):8124-8132(2006).
XX
RN   [2]
RP   1-1828
RA   Rico P., Ivars P., Elena S.F., Hernandez C.;
RT   ;
RL   Submitted (06-MAR-2006) to the EMBL/GenBank/DDBJ databases.
RL   Biologia del estres, Instituto de Biologia Molecular y Celular de Plantas,
RL   Avda. de los Naranjos s/n, Valencia, Valencia 46022, Spain
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1828
FT                   /organism="Pelargonium flower break virus"
FT                   /specific_host="Pelargonium"
FT                   /isolate="GER1"
FT                   /mol_type="genomic RNA"
FT                   /country="Germany"
FT                   /clone="2"
FT                   /db_xref="taxon:35291"
FT   gene            193. .399
FT                   /gene="p7"
FT   CDS             193. .399
FT                   /codon_start=1
FT                   /gene="p7"
FT                   /product="putative movement protein"
FT                   /db_xref="GOA:Q70WT9"
FT                   /db_xref="InterPro:IPR007982"
FT                   /db_xref="UniProtKB/TrEMBL:Q70WT9"
FT                   /protein_id="ABD93265.1"
FT                   /translation="MASKVIVPDLGSDNEIDVSVGGRGNRGKQKGKISVAKDAVSKRTS
FT                   DGGNGGSWVVVAETVSVNIHFNF"
FT   gene            233. .553
FT                   /gene="p12"
FT   CDS             233. .553
FT                   /codon_start=1
FT                   /gene="p12"
FT                   /product="putative movement protein"
FT                   /db_xref="UniProtKB/TrEMBL:Q1PGI7"
FT                   /protein_id="ABD93266.1"
FT                   /translation="MRLTCQWEDVEIGENRRVRYPSQRTLSPNGHLMVVMGVLGLLWLR
FT                   PFRSIYTSTFSMPPLINLQHILNLTLLSLILSSFILAERVTHNQYSNDNSKAQYIRIST
FT                   GQ"
FT   gene            555. .1592
FT                   /gene="CP"
FT   CDS             555. .1592
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q1PGF0"
FT                   /db_xref="UniProtKB/TrEMBL:Q1PGF0"
FT                   /protein_id="ABD93267.1"
FT                   /translation="MDAYKNDPIVRQAVAKGVAWAVKLNTRGWSSLTTQQKKAARSALS
FT                   VIQSPAVVVPRRTRVRNPVPAGLKSGNGKAGKSSTLTRSEFICNVSSTTGVTPTFQSWI
FT                   INPREVKSFPQSSVCSVGYNKYRITDFRIRFSTSCSDTMNGKVAIGFTPDSSDPVPVDK
FT                   SQLYGMQVYADTPAKESVTLKTAADNTIRFLRDSSSDDAKLVDYGRVVLATYGFDSTAP
FT                   SVIGELFFEYTVVYLDPTYVVALTQHGTLTTSSGPPYATLTTTATSTSMELNTHGKWLV
FT                   VWVSADEVINSPVISGSGASGSVTVVSDAQTTVVAVVTANLPGAIISNTSTAAPSSLEW
FT                   YVSRL"
XX
SQ   Sequence 1828 BP; 465 A; 439 C; 485 G; 439 T; 0 other;

dq443021 Length: 1828  01-AUG-2006  Type: N  Check: 2905  ..

       1  atcaggaacg tacaggttag cccagaattc ttctcgggcc tatgattcag
      51  ttagcgagat ggcgcgtttt agtttctacc tggcatttgg agttatccca
     101  gatgctcaga ttgccttgga gaaacacata agagacatgc ccgtcgcaat
     151  tgaatttggg cccgatgaaa gtctggcaga ccacacaatt gaatggcttc
     201  taaagtgatc gttcctgatt tgggtagtga taatgagatt gacgtgtcag
     251  tgggaggacg tggaaatagg ggaaaacaga agggtaagat atccgtcgca
     301  aaggacgctg tctccaaacg gacatctgat ggtggtaatg ggggttcttg
     351  ggttgttgtg gctgagaccg tttcggtcaa tatacacttc aacttttagc
     401  atgccccctc tgataaacct ccaacacata ttgaatctta ccttgttgtc
     451  cttaattctg agttctttca tcttggcaga gagagtaacg cacaatcagt
     501  actcaaacga caacagcaaa gcgcaatata tacggatctc aactgggcaa
     551  taacatggac gcctacaaga atgacccaat agttaggcag gcagtggcaa
     601  agggagtagc ttgggcggtt aagctgaaca ctagagggtg gtcttcattg
     651  accacccaac agaagaaagc tgcgcgctca gctctgtctg tgatacaatc
     701  cccagcggtg gttgtacctc gcagaaccag agtacgaaac ccagtacccg
     751  cgggcctgaa atcagggaat ggcaaggcag ggaaaagctc aactttaacc
     801  cgatcggagt ttatctgcaa cgtatcgagc acaaccgggg tgaccccgac
     851  tttccaatca tggatcataa atcctaggga ggtcaaaagt ttcccacaat
     901  cttccgtctg ctcggttggc tacaacaagt acaggattac ggacttcagg
     951  attaggtttt ctacttcctg ttccgacact atgaatggga aggtggccat
    1001  tggcttcact cctgactcta gcgatccggt tcctgttgat aagtcacagc
    1051  tgtacgggat gcaggtgtat gccgacactc cagcaaagga gtcggtcacc
    1101  ttgaagacgg ctgcagataa tacgatcagg ttcctgcggg attcatccag
    1151  cgatgatgcc aagctggtgg attatggccg cgtagtttta gccacatacg
    1201  gtttcgatag cacagctccg tcagtgatag gagagctgtt cttcgagtac
    1251  accgtagttt atctcgaccc tacctatgtc gtggctttaa cacaacatgg
    1301  cacgttgacc acctcatctg gccccccata tgctaccttg accaccactg
    1351  ctacttcaac atccatggaa ttaaacaccc atggaaagtg gctagtggtt
    1401  tgggtctcgg cagacgaggt gatcaactct ccggttatat ccgggtccgg
    1451  ggcaagcgga tccgtaactg tcgttagcga cgcacagact actgttgttg
    1501  cagtggttac cgcaaacttg ccaggcgcca tcatttccaa cacttcaacc
    1551  gctgcccctt cgtcactgga gtggtacgta tctaggctat gagagggcag
    1601  tcaccctacc ttctgccaga ggttcccgga ggagtagtga tcctttgggg
    1651  gtgattcata gctaggaaag gtcggagagt tgggaggggg ccaactgggg
    1701  gaggtgctag gagcaccaga ggcagcagag caaaaatccg ggtttcatcg
    1751  cctggtgcgg gcgctcaatg ctgctaacaa gttcctgaag gaagaaaggt
    1801  tttggtcgat ggagacctta acccgccc