Sequence of DPV Tomato yellow fruit ring virus
Tomato yellow ring virus strain TYRV-s non-structural protein (NS) and nucleocapsid protein (N) genes, complete cds.
ACC No: DQ462163
Dated: 2006-12-30 | Length: 3006 | CRC: 1766608810
ID DQ462163; SV 1; linear; genomic RNA; STD; VRL; 3006 BP.
XX
AC DQ462163;
XX
DT 01-SEP-2006 (Rel. 89, Created)
DT 30-DEC-2006 (Rel. 90, Last updated, Version 3)
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DE Tomato yellow ring virus strain TYRV-s non-structural protein (NS) and
DE nucleocapsid protein (N) genes, complete cds.
XX
KW .
XX
OS Tomato yellow ring virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN [1]
RP 1-3006
RX PUBMED; 16932983.
RA Hassani-Mehraban A., Saaijer J., Peters D., Goldbach R., Kormelink R.;
RT "Molecular and biological comparison of two Tomato yellow ring virus (TYRV)
RT isolates: challenging the Tospovirus species concept";
RL Arch. Virol. 152(1):85-96(2007).
XX
RN [2]
RP 1-3006
RA Hassani-Mehraban A., Saaijer J., Peters D., Goldbach R., Kormelink R.;
RT ;
RL Submitted (24-MAR-2006) to the EMBL/GenBank/DDBJ databases.
RL Laboratory of Virology, Wageningen University, Binnenhaven 11, Wageningen
RL 6709 PD, The Netherlands
XX
FH Key Location/Qualifiers
FH
FT source 1. .3006
FT /organism="Tomato yellow ring virus"
FT /segment="S"
FT /specific_host="soybean"
FT /strain="TYRV-s"
FT /mol_type="genomic RNA"
FT /country="Iran"
FT /note="acronym: TYRV"
FT /db_xref="taxon:304859"
FT gene 72. .1403
FT /gene="NS"
FT CDS 72. .1403
FT /codon_start=1
FT /gene="NS"
FT /product="non-structural protein"
FT /db_xref="InterPro:IPR004915"
FT /db_xref="UniProtKB/TrEMBL:Q0GY53"
FT /protein_id="ABF59485.1"
FT /translation="MSTVKTTAVEFFSNYGISCDSRSSNDCYRIFSGEGKTLMDVFMHS
FT TIGIKPAFSIGNLGRNEDIKANEAEIIDEHHNYDIFDKFGLDINFCNHFMEITVKKPSV
FT KNYETKFQMHNQIFEPSSNLLKQGVGKMSETDFYSCSNLSKDDMYPSEWFINEARRKNF
FT FMADVSGFNLDYGFSVMGKTTSYWKENMDKTSLISVKQKSMNNPLVPTNRLLSASTIKA
FT IEIASNIACNKSTILAVKQDLTSDLKTQFRISLPGEYNETAIARTFLINQGKKGQYICI
FT YAKTVMDRSNERTTLIIKVVTQSRPGEYISTLLPKDHSDCRRVVGASFGIVEQKPTDPN
FT YNKIIAHELLSVHTNFALKISKVLKKPVIVYKIYDKELLPKKVEIDGRTFNYQEDIDGN
FT VYFLSTTLAILPLSVSVLFYLESASPSCWKESRGLGHFTVEEVQ"
FT gene complement(2110. .2934)
FT /gene="N"
FT CDS complement(2110. .2934)
FT /codon_start=1
FT /gene="N"
FT /product="nucleocapsid protein"
FT /db_xref="GOA:Q0GY52"
FT /db_xref="InterPro:IPR002517"
FT /db_xref="UniProtKB/TrEMBL:Q0GY52"
FT /protein_id="ABF59486.1"
FT /translation="MSTARVSKEKIEKLLAGGEADVVIEAEEAAGFNFKEFVLANKTMK
FT MTFNNGYTILRIRAGIYKMVKAGQFKFQGKPIVVPSATVSAGQDDWTFRRLEGFIRAKM
FT FMELIAVENVAEQQKMYEKLCELPMVSAYGLKPSSKFDATTARVMLTLGGPLPLMASLD
FT KFAACASPLAYFQNVKKESLGISKFSTYEQLCKIARVMATKGFDFADVSKDIFEETIKI
FT LNDCTPGAAGAASLNKFNEQIKALESTFGKIVDDTGAGSSKPKPTSKKNDAF"
XX
SQ Sequence 3006 BP; 1017 A; 569 C; 496 G; 924 T; 0 other;
dq462163 Length: 3006 30-DEC-2006 Type: N Check: 6332 ..
1 agagcaatcg agggtataag caaaaatcat caacaacttt aaacaaagta
51 agcagcaata ctatctcagc catgtctacc gtcaaaacaa cagcagttga
101 attcttctca aactatggaa tctcctgtga ctctcgttca agcaacgatt
151 gctacagaat cttctctggt gagggaaaaa ctctcatgga tgtttttatg
201 cactcaacga ttggaatcaa gcctgctttc agtattggaa atctcgggag
251 gaatgaggac atcaaagcca atgaagcaga gatcattgat gagcatcaca
301 actatgatat ttttgataag tttggcttgg acataaattt ttgcaaccat
351 ttcatggaaa ttactgttaa gaagccatcg gtaaaaaact atgagacaaa
401 attccaaatg cataaccaga tatttgaacc ctcgtcaaat ttgctcaagc
451 aaggtgttgg caaaatgtct gaaactgatt tttattcttg ctcaaacctt
501 tccaaggatg acatgtatcc aagtgaatgg tttataaatg aagctagaag
551 aaagaatttt tttatggctg atgtttctgg gttcaacctg gattatggtt
601 tttctgttat gggtaaaact acttcttatt ggaaggaaaa catggacaaa
651 acatcattga tctctgtcaa gcagaaatcc atgaacaacc ctttggtgcc
701 tacaaacagg ctcttatcag cttctacaat aaaagcaata gagattgcat
751 ccaatattgc ctgcaacaaa tcaactatac tcgcagtcaa gcaagatctg
801 acttcagatc tcaaaactca atttaggatc tcattgcctg gagaatacaa
851 tgaaacagct atagctagga cattcttaat caatcaagga aagaaaggtc
901 aatacatttg catttatgct aaaactgtta tggacagatc caatgaaagg
951 accacattaa tcataaaagt tgtcactcaa agcagacctg gagagtacat
1001 ttcaactcta cttccaaaag atcactcaga ttgcagaaga gtggttggag
1051 ctagttttgg gattgttgag cagaaaccga cagatccaaa ttataacaag
1101 ataattgcgc atgaactact ttctgtgcac acaaactttg ctttaaagat
1151 atccaaagtt ttaaagaagc ctgtgatagt ctataaaatc tatgataaag
1201 aattgttacc aaaaaaagtg gaaatagatg gtagaacatt taactaccaa
1251 gaagacattg atggaaatgt ttactttctg tctaccactc ttgcaatcct
1301 gcctctatct gtttctgttt tattttatct tgaatctgct tccccatcct
1351 gctggaaaga atccagaggg ttaggacatt tcactgtaga agaggtgcag
1401 tgacaaaaga aagcatctat cggcagtgta agggtttatt tcattatatt
1451 acatgctact agtactctat ttaaattgct tgttaagtta aatgttattt
1501 tctatcactc taattacctt taagttttac ttattagaat aagctataga
1551 agtttagaac tgtttaaaac taaaataaac taagtaaagt gtgtcaataa
1601 attaaaaata aataaaagca aataaaaata aaataaatca aaaaacaaaa
1651 aaattaaaaa tcaaaaaacc aaaaaaagcc tacgggcaaa ttctgacttc
1701 catacccata tgaaattatc ggtgtgaaac ccagagtttg cccgtaggct
1751 ttttttggtt ttttgtattt ttttattttt tgttttgttt ttgtttttct
1801 tttatatgta tatttattta acttattaaa cactcttatg tataattgag
1851 cacacattta agtaatataa acataacaga acttattaaa acactcgtaa
1901 gcataattga acacacacta gagtataaca aacaatacaa acttaaacac
1951 actgataaac tatatagcaa acaggaaact gaaatatagg attataaaca
2001 tatataaata aaatacacac ataatgacta gaaatacttt agtaatctta
2051 aatattacac aatactaaac gatagcagaa aatactttta caacttgcaa
2101 aagcatttat taaaatgcat cgttcttttt ggaggtaggc ttgggtttag
2151 aagacccagc accagtgtca tcaacaatct ttccaaaggt gctttcaaga
2201 gctttaatct gctcattgaa tttgttcaat gaagcagcac cagcagctcc
2251 tggagtgcag tcattgagga tttttatggt ttcttcaaag atgtccttgg
2301 aaacatcagc aaaatcaaat cccttagtag ccattactct ggcgatcttg
2351 cacagctgct cataagttga aaatttactt atgcctaaag attctttctt
2401 tacattctga aaataagcca gtggagatgc acatgcagca aatttatcaa
2451 gacttgccat cagagggaga ggaccaccca atgtcaacat tactctggct
2501 gtggttgcat caaactttga gctcggtttc aaaccatatg cgctcaccat
2551 gggaagctca caaagcttct catacatttt ctgctgctca gccacatttt
2601 ccacagcaat cagctccatg aacatctttg ctctgatgaa gccctccaac
2651 cttctgaatg tccaatcatc ttgaccagca ctcacagtag cactaggcac
2701 aacaataggc tttccttgga atttaaattg acctgctttt accattttgt
2751 aaatccctgc tctgatcctt aaaattgtgt aaccgttatt gaatgtcatc
2801 ttcatggttt tgttagccag aacaaactcc ttgaagttga accctgcagc
2851 ttcctcagcc tcgatcacta catctgcttc gccaccggca agaagcttct
2901 caattttctc tttgcttacc cttgcggtag acatggtgtt tacttaggaa
2951 gcggtttact ttttctgaag ttgtttgaat ttaatgtgtt atacgtcgat
3001 tgctct