Sequence of DPV Barley yellow dwarf virus-PAV

Barley yellow dwarf virus-PAV isolate Yolo_270_PAV coat protein gene, complete cds.

ACC No: DQ631848

Dated: 2008-06-06 | Length: 798 | CRC: 763516605

                
ID   DQ631848; SV 1; linear; genomic RNA; STD; VRL; 798 BP.
XX
AC   DQ631848;
XX
DT   29-MAY-2008 (Rel. 95, Created)
DT   06-JUN-2008 (Rel. 96, Last updated, Version 2)
XX
DE   Barley yellow dwarf virus-PAV isolate Yolo_270_PAV coat protein gene,
DE   complete cds.
XX
KW   .
XX
OS   Barley yellow dwarf virus-PAV
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Luteovirus.
XX
RN   [1]
RP   1-798
RA   Newton L.A., Linton E.W., Malmstrom C.M.;
RT   "Secrets of the herbarium: Historic associations among RNA viruses and wild
RT   grass hosts";
RL   Unpublished.
XX
RN   [2]
RP   1-798
RA   Newton L.A., Linton E.W., Malmstrom C.M.;
RT   ;
RL   Submitted (12-MAY-2006) to the EMBL/GenBank/DDBJ databases.
RL   Department of Plant Biology, Michigan State University, 166 Plant Biology
RL   Laboratories, East Lansing, MI 48824, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .798
FT                   /organism="Barley yellow dwarf virus-PAV"
FT                   /specific_host="Avena fatua"
FT                   /isolate="Yolo_270_PAV"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:California, natural grassland in Yolo County"
FT                   /isolation_source="wild host"
FT                   /collection_date="2002"
FT                   /note="acronym: BYDV"
FT                   /db_xref="taxon:12040"
FT   CDS             196. .798
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /protein_id="ABG24219.1"
FT                   /translation="MNSVGRRGPRRANQNGPRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT                   KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT                   TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISKTASKVFRSEAINGKEF
FT                   QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK"
XX
SQ   Sequence 798 BP; 240 A; 203 C; 184 G; 171 T; 0 other;

dq631848 Length: 798  06-JUN-2008  Type: N  Check: 2853  ..

       1  ccagagtgtg aaggtgacga ctccacatct gcaatcaata ctgctttcca
      51  taccggaaaa ccactcacaa aacgaatatt aattaccaaa tcttagctgg
     101  gtttgggata gggttcatag ttagtatacc ctgtacatta gctctcgcgt
     151  actttattta caataaagtt tcagacacca ctagagaggt ggtgaatgaa
     201  ttcagtaggc cgtagaggac ctagacgcgc aaatcaaaat ggcccaagaa
     251  ggaggcgccg tagaacagtt cggccagtgg ttgtggtcca acccaatcga
     301  gcaggaccca gacgacgaaa tggtcgacgc aagggaagag gaggggcaaa
     351  tcctgtattt agaccaacag gcgggactga ggtattcgta ttctcagttg
     401  acaaccttaa agccaactcc tccggggcaa tcaaattcgg ccccagtcta
     451  tcgcaatgcc cagcgctttc agacggaata ctcaagtcct accatcgtta
     501  caagatcaca agtatccgag ttgagtttaa gtcacacgcg tccgccacta
     551  cggccggcgc tatctttatt gaactcgaca ccgcgtgcaa gcaatcagcc
     601  ctgggtagct acattaattc cttcaccatc agcaagaccg cctccaaggt
     651  cttcaggtca gaggcaatta acgggaagga attccaggaa tcaacgatag
     701  accaattctg gatgctctac aaggccaatg gaaccaccac tgacacggca
     751  ggacaattca tcatcacaat gagtgtcagt ctaatgacgg ccaaatag