Sequence of DPV Spilanthes yellow vein virus
Spilanthes yellow vein virus segment DNA-A, complete sequence.
ACC No: DQ641694
Dated: 2007-12-21 | Length: 2761 | CRC: 1522166090
ID DQ641694; SV 1; circular; genomic DNA; STD; VRL; 2761 BP.
XX
AC DQ641694;
XX
DT 03-MAY-2007 (Rel. 91, Created)
DT 21-DEC-2007 (Rel. 94, Last updated, Version 2)
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DE Spilanthes yellow vein virus segment DNA-A, complete sequence.
XX
KW .
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OS Spilanthes yellow vein virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2761
RX PUBMED; 18089756.
RA Ha C., Coombs S., Revill P., Harding R., Vu M., Dale J.;
RT "Molecular characterization of begomoviruses and DNA satellites from
RT Vietnam: additional evidence that the New World geminiviruses were present
RT in the Old World prior to continental separation";
RL J. Gen. Virol. 89(PT 1):312-326(2008).
XX
RN [2]
RP 1-2761
RA Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT ;
RL Submitted (18-MAY-2006) to the EMBL/GenBank/DDBJ databases.
RL Institute of Health and Biomedical Innovation, Queensland University of
RL Technology, 2 George Street, Brisbane, Queensland 4001, Australia
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FH Key Location/Qualifiers
FH
FT source 1. .2761
FT /organism="Spilanthes yellow vein virus"
FT /segment="DNA-A"
FT /specific_host="para cress (Spilanthes paniculata,
FT Asteraceae); weed"
FT /mol_type="genomic DNA"
FT /country="Viet Nam:Dalat"
FT /note="acronym: SpYVV"
FT /db_xref="taxon:390439"
FT gene 163. .510
FT /gene="AV2"
FT CDS 163. .510
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2 protein"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:A5H164"
FT /protein_id="ABG26024.1"
FT /translation="MWDPLLHPFPETVHGFRCMLAVKYLQLVESTYSPDTLGFDLIRDL
FT ITVIRCSNYVEATSKYCHFHALIEGTSETQLRQPVCEPCLCPHCPRHKGSGMDQQTYVP
FT KASDVQNVQKP"
FT gene 323. .1093
FT /gene="AV1"
FT CDS 323. .1093
FT /codon_start=1
FT /gene="AV1"
FT /product="CP protein"
FT /db_xref="GOA:A5H165"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:A5H165"
FT /protein_id="ABG26023.1"
FT /translation="MSKRPASIVISTPSSKVRRRLNFDSPYANRASAPIVRVTKGQVWT
FT NRPMFRKPRMYRMFRSPDVPRGCEGPCKVQSYDSKHDIGHLGKVLCVSDVTRGNGLTHR
FT TGKRFCVKSLYVIGKIWMDEKIKNKNHTNTVMFWLVRDRRPSGVPQDFQQVFNVYDNEP
FT ATATVKNDSRDRYQVLRRFQSTVTGGQYASKEQAIIRKFIRVNTHVTYNHQEDAKYANH
FT TENALLLYMCCTHHENPVYGTLKIRSYFYDSVSN"
FT gene complement(1090. .1494)
FT /gene="AC3"
FT CDS complement(1090. .1494)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:A5H166"
FT /protein_id="ABG26027.1"
FT /translation="MDSRTGELITAAQAENGVYIWTITNPLYFKIINHENRPFLMETDI
FT ITIRIQFNYNLRKALGIHKCFLTYRVWTSLQPQTSRFLRVFKTQLMMYLNNLGVISVNN
FT VIRAVKYVLYERLNGTVDIEETNDIKYNIY"
FT gene complement(1208. .1642)
FT /gene="AC2"
FT CDS complement(1208. .1642)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP protein"
FT /db_xref="GOA:A5H167"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:A5H167"
FT /protein_id="ABG26026.1"
FT /translation="MRSSSPSTSHCTLPNIKVQHREAKKKTIRRRRIDLKCGCTYYLSI
FT NCVNHGFSHRGTYHCSSSREWRLYLDNNKSPIFQDHQPREPTIPHGDRHHNNKDTIQLQ
FT PSESIGDTQMFSNLSSLDELTTSDIAFLESLQDPINDVFE"
FT gene complement(1542. .2630)
FT /gene="AC1"
FT CDS complement(1542. .2630)
FT /codon_start=1
FT /gene="AC1"
FT /product="rep protein"
FT /db_xref="GOA:A5H168"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:A5H168"
FT /protein_id="ABG26025.1"
FT /translation="MAPNNRFRVSARNYFLTYPHCSLTKEETLSQLSNLVCPTNKKFIK
FT ICRELHEDGSPHLHVLIQFEGKYVCTNKRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQIDGRSARGGQQDLNDLGAEVWNATSVNAAKQLVKEKQPWTYLLQRH
FT NIVANIEKEFEKPPEPFVCPFPTTAFDNVPTMMKVWAQEFVTNSAARPLRPKGIVIEGE
FT SRTGKTLWARSLGPHNYLCGHLDLNPNVFSNDAWYNVIDDVDPHYLKHYKEFMGSQTNW
FT QSNRKYGKPVQIKGGIPTIFLCNPGPTSSYTEFLEEEKNAKLKRWSNYNAIFITLNEPL
FT YSTEYQGPAPRGEEEDHQETED"
FT gene complement(2201. .2473)
FT /gene="AC4"
FT CDS complement(2201. .2473)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:A5H163"
FT /protein_id="ABG26028.1"
FT /translation="MGALISTCLFNSRGNTSARINDSSTLYPQPGQHISIRTYRELNQA
FT PMSSPISTRTETHWNGENSRSTEGVLEEANRILTILVQRSGTQHP"
XX
SQ Sequence 2761 BP; 701 A; 556 C; 612 G; 892 T; 0 other;
dq641694 Length: 2761 21-DEC-2007 Type: N Check: 8510 ..
1 accggacggc cgcgattttt tatacatggc cccaccacgc attaacaaag
51 gaaaaaggaa aaaatggtcc cctgggtttt atccaatcag atcttttatt
101 caaacgttaa taataaatgt ggtcccctat taaatgcgct ccccccaagc
151 aaaattcaaa aaatgtggga tccgctcctc catccttttc cagaaaccgt
201 acatggtttc cgttgtatgt tagccgtaaa gtatttacag ttagtagagt
251 ctacgtattc cccagatacg ttagggtttg atcttatacg tgatttaatt
301 acagtaatta ggtgtagtaa ctatgtcgaa gcgaccagca agtattgtca
351 tttccacgcc ctcatcgaag gtacgtcgga gactcaactt cgacagcccg
401 tatgcgaacc gtgcctctgc ccccattgtc cgcgtcacaa agggtcaggt
451 atggaccaac agacctatgt tccgaaagcc tcggatgtac agaatgttca
501 gaagccctga tgttcccaga ggttgtgagg gtccttgtaa ggttcagtct
551 tatgattcta agcatgacat tggtcatctt ggtaaggtac tttgtgtttc
601 ggatgttacc cgtggtaacg gccttaccca tcgtactggt aaacgttttt
651 gtgttaagtc gttgtatgtt attgggaaga tatggatgga tgagaagatt
701 aagaataaga atcatactaa caccgttatg ttctggttag ttagagatag
751 aaggccttca ggtgtacctc aggattttca acaggttttt aatgtttatg
801 ataatgaacc tgcgacagct actgtgaaga acgattctcg agatcgttac
851 caggttttac ggcgttttca gtctactgtt actggtggtc agtatgcttc
901 taaagaacag gctattattc ggaagtttat ccgtgtaaac acacatgtga
951 cgtataatca tcaagaggat gcgaaatatg ccaatcatac ggagaatgct
1001 ttgttattgt atatgtgttg tactcatcat gagaaccctg tgtatggaac
1051 tctaaagatc cgcagttatt tttacgactc ggtatctaat taataaatgt
1101 tgtattttat atcatttgtc tcttcgatat caactgtacc gttaagacgt
1151 tcatacaata catatttaac tgctctaatt acattattaa cagaaattac
1201 acctaaatta ttcaaataca tcattaattg ggtcttgaag actctcaaga
1251 aacgcgatgt ctgaggttgt aagctcgtcc agactcgata ggttagaaaa
1301 catttgtgta tccccaatgc tttccgaagg ttgtagttga attgtatcct
1351 tattgttatg atgtctgtct ccatgaggaa tggtcggttc tcgtggttga
1401 tgatcttgaa atatagggga tttgttattg tccagatata gacgccattc
1451 tctgcttgag ctgcagtgat aagttcccct gtgcgagaat ccatggttga
1501 cacagtttat tgataggtag tatgtgcaac cacacttcag gtcaatcctc
1551 cgtctcctga tggtcttctt cttcgcctct cggtgctgga ccttgatatt
1601 cggtagagta caatggctcg ttgagggtga tgaagatcgc attgtaatta
1651 gaccacctct tgagctttgc gttcttttcc tcttctaaaa actctgtata
1701 tgaagaggtt ggacctggat tgcagaggaa gatagtgggt atcccacctt
1751 taatttgaac cggctttccg tactttctgt tgctttgcca gtttgtttgg
1801 gaccccatga attctttata gtgctttaga tagtgcgggt cgacgtcatc
1851 tattacgtta taccatgcgt cgttagagaa cacattaggg tttaagtcta
1901 aatgtccaca taagtaatta tgtggcccta atgacctggc ccacaacgtt
1951 ttcccggttc gactttcacc ttcaatgaca atgcctttgg gccttagagg
2001 ccgcgcagcg gaatttgtca caaattcttg agcccatacc ttcatcatgg
2051 tcgggacatt gtcaaatgct gtcgtgggaa atggacacac aaacggttct
2101 ggtggtttct cgaattcttt ttcgatattt gccactatgt tgtgccgttg
2151 taatagatat gtccacggtt gcttctcctt tactaattgc ttggcagcat
2201 ttacggatgt tgcgttccag acctctgcac caagatcgtt aagatcctgt
2251 tggcctcctc tagcactcct tccgtcgatc tggaattctc cccattccag
2301 tgtgtctccg tccttgtcga tataggactt gacatcggag cttgatttag
2351 ctccctgtat gttcggatgg aaatgtgttg accgggttgg ggatacaagg
2401 tcgaagaatc gtttattcgt gcagacgtat ttcccctcga attgaataag
2451 cacgtggaga tgagggctcc catcttcgtg tagctctctg cagattttaa
2501 tgaatttttt atttgttgga caaactaggt tacttaattg ggaaagtgtt
2551 tcttctttgg tgagagagca gtgtgggtat gtaagaaaat aatttctggc
2601 tgaaactcta aatctgttat tcggagccat ttattgctct ggattggtga
2651 cactctgagc tcgaagagta taatagtatt ggtgactggt gtacaatata
2701 tagaggtgag taaaagcctc aaattccacg tggaatctat cgcggccgtc
2751 cttataatat t