Sequence of DPV Tomato ringspot virus
Tomato ringspot virus isolate raspberry RNA-dependent RNA polymerase gene, partial cds.
ACC No: DQ641947
Dated: 2006-06-20 | Length: 2133 | CRC: 1504665849
ID DQ641947; SV 1; linear; genomic RNA; STD; VRL; 2133 BP.
XX
AC DQ641947;
XX
DT 20-JUN-2006 (Rel. 88, Created)
DT 20-JUN-2006 (Rel. 88, Last updated, Version 1)
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DE Tomato ringspot virus isolate raspberry RNA-dependent RNA polymerase gene,
DE partial cds.
XX
KW .
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OS Tomato ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Comoviridae;
OC Nepovirus; Subgroup C.
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RN [1]
RP 1-2133
RA Jing B., Yun C.H., Fang Z.S., Fan F.J.;
RT "Cloning and sequence analysis of the RNA-dependent RNA-polymerase of
RT Tomato ringspot virus-Canada raspberry isolate";
RL Unpublished.
XX
RN [2]
RP 1-2133
RA Jing B., Yun C.H., Jun Z.W., Fang Z.S., Fan F.J.;
RT ;
RL Submitted (17-MAY-2006) to the EMBL/GenBank/DDBJ databases.
RL Chinese Academy of Inspection and Quarantine, Beijing, China
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FH Key Location/Qualifiers
FH
FT source 1. .2133
FT /organism="Tomato ringspot virus"
FT /isolate="raspberry"
FT /mol_type="genomic RNA"
FT /country="Canada"
FT /db_xref="taxon:12280"
FT CDS <1. .>2133
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="ABG23688.1"
FT /translation="SSIIKSLVQEAGIEERGVSKVGHIKDPAETPHVGGKTKLELVDEA
FT FLVPSPVEVKIPSILSKDDPRIPEAYKGYDPLGDAMEKFYEPMLDLDGDVLECVMADMY
FT DEFYDCQTTLRIMSDDEVINGSDFGFNIEAVVKGTSEGYPFVLSRRAGEKGKARFLEEL
FT EPQPGDTKPKYKLVEGTEVHSAMMAMEEQARTEVPLLIGMDVPKDERLKPSKVLEKPKT
FT RTFVVLPMHYNLLLRKYVGILCSSMQVNRHRLACAVGTNPYSRDWTDIYQRLAEKNSVA
FT LNCDYSRFDGLLNYQAYVHIVNFINRLYNDEHSTVRGNLLMAMYGRWSVCGQRVYEVRA
FT GMPSGCALTVIINSLFNELLIGYVYRVTVPRSLVNNFKQEVCLIVYGDDNLISIKPDTM
FT KYFNGEQIKSTLAKYRITITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDL
FT QAIYSSLYYINPQGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLNLP
FT QWRHCASFHDEQYSQWKPWSPVKFLEVDVPDVKFLQHKAPATALSIVADRLAVAGPGWR
FT NKDPDKYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRRLKDHRVRHMRDSW
FT NEGKTIVFRCEGPFVSGWAAAISFGASIGMNAQDLLINYGIQGGAHRDFLGRYFINTRF
FT KELERYDRPYATRISAG"
XX
SQ Sequence 2133 BP; 561 A; 416 C; 528 G; 628 T; 0 other;
dq641947 Length: 2133 20-JUN-2006 Type: N Check: 2592 ..
1 tctagcatta tcaagtccct tgttcaggaa gctggcattg aggagagagg
51 agtgtctaaa gtggggcata ttaaggatcc tgctgagaca ccacatgtgg
101 gagggaaaac taagcttgag ttggtggatg aagccttttt ggtgccatca
151 ccagttgaag ttaagatccc ttctattctt tcaaaggatg atcctcgcat
201 tcccgaagct tacaagggat atgatccatt gggcgatgct atggaaaaat
251 tttacgagcc catgctggac ctcgatgggg atgttttgga gtgcgttatg
301 gctgatatgt atgacgagtt ctatgattgc cagacgacac ttcgcattat
351 gtctgatgac gaagttatca atggcagcga ctttggtttt aatatcgagg
401 ccgttgttaa agggacttct gaaggctacc cgtttgtttt gagtcgacga
451 gcgggtgaaa aaggtaaagc tcgtttttta gaagagctag agcctcaacc
501 aggagacacc aagcccaaat acaagttggt tgaaggtacc gaggtgcatt
551 ccgctatgat ggcaatggag gagcaggctc gtactgaggt tccgttgctt
601 attggaatgg atgttccgaa ggatgagaga ctcaagccgt ccaaggtact
651 ggagaagcct aagacgcgca cattcgttgt tctcccaatg cactataact
701 tgttgctacg caagtacgta ggaatacttt gttctagcat gcaagttaat
751 aggcaccgtt tggcatgcgc tgtgggaacc aacccatatt cgcgtgattg
801 gacggatatt tatcaacgcc tggctgaaaa aaattcagta gccttgaact
851 gcgactatag tcgttttgat gggctactta attatcaggc atatgttcat
901 attgtaaatt ttattaatag gttatataat gatgaacata gtaccgttcg
951 tggcaatctt ttaatggcca tgtatggtag gtggagtgtg tgtggacaac
1001 gtgtttacga agttcgcgct ggcatgccct ctggatgtgc cctcaccgtg
1051 attattaact ctctttttaa cgagctatta atcggatatg tttatcgcgt
1101 cactgtacca cgctccctag taaataattt taaacaggaa gtgtgtctca
1151 tagtatacgg tgacgataat ttgatttcta ttaagccaga caccatgaaa
1201 tatttcaatg gtgaacagat taaatctact ctggctaaat ataggattac
1251 cattactgat ggcagtgata agaactcgcc agtccttaga gccaagcctc
1301 tgaagcaact tgattttttg aagagaggct ttagggttga aagtgatgga
1351 agggtgcttg cccccctcga tttgcaagct atctattctt ccctgtatta
1401 tattaaccca cagggaaaca tattaaattc tttattttta aatgctcagg
1451 ttgctctgag agagttatat ctccatggtg atgttgagca attcactgct
1501 gtcaggaatt tctacgtcaa gcaaattggc gggaacttcc tgaatttacc
1551 ccaatggaga cactgtgctt cctttcatga tgagcagtat tctcaatgga
1601 agccgtggtc acctgtgaaa tttttggagg tagatgtgcc tgatgttaaa
1651 tttttgcaac acaaggcacc agccaccgcc ctttcgattg ttgctgatag
1701 actcgcggtt gcaggacctg gatggcgcaa taaagatcca gataagtact
1751 tgcttgtgag tcttactagt ttaaaggcta acgagggcgg cctgtatttt
1801 cccgttgatt atggggaagg tacaggacaa caagctacgg aagcttctat
1851 tagagcttac cgtagattaa aagatcatcg cgtacgccat atgcgcgatt
1901 cttggaatga agggaaaacc atcgtgtttc gatgtgaggg tcctttcgtt
1951 tctggttggg ctgcagccat ctcgttcggt gcgagtattg gtatgaatgc
2001 ccaagatcta ctcatcaatt atggcataca aggtggcgct catagagatt
2051 ttctagggcg ctattttatt aacacacgct tcaaagagct ggagcgttat
2101 gataggcctt atgccactcg catttcagcg ggc