Sequence of DPV Sugarcane mosaic virus
Sugarcane mosaic virus isolate Sc-NW1 polyprotein gene, partial cds.
ACC No: DQ647656
Dated: 2006-07-02 | Length: 2601 | CRC: -926119236
ID DQ647656; SV 1; linear; genomic RNA; STD; VRL; 2601 BP.
XX
AC DQ647656;
XX
DT 02-JUL-2006 (Rel. 88, Created)
DT 02-JUL-2006 (Rel. 88, Last updated, Version 1)
XX
DE Sugarcane mosaic virus isolate Sc-NW1 polyprotein gene, partial cds.
XX
KW .
XX
OS Sugarcane mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-2601
RA Reanwarakorn K., Warawichanee K., Klinkong S.;
RT "Sequence analysis of Sugarcane mosaic virus infecting sugarcane in
RT Thailand";
RL Unpublished.
XX
RN [2]
RP 1-2601
RA Reanwarakorn K., Warawichanee K., Klinkong S.;
RT ;
RL Submitted (12-MAY-2006) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Kasetsart University, Malaiman, Kamphaeng Saen, Nakhorn
RL Pathom 73140, Thailand
XX
FH Key Location/Qualifiers
FH
FT source 1. .2601
FT /organism="Sugarcane mosaic virus"
FT /specific_host="sugarcane"
FT /isolate="Sc-NW1"
FT /serotype="SCMV"
FT /mol_type="genomic RNA"
FT /country="Thailand:Nakhon Sawan province"
FT /db_xref="taxon:12224"
FT CDS <1. .>2601
FT /codon_start=3
FT /product="polyprotein"
FT /protein_id="ABG37678.1"
FT /translation="VGIHSLASTSGNTNFFVAMPENFNEYISNLVQTNKWERGWHYNPN
FT LISWCGLNLVDSAPKGLFETSKLVEDLDMSVEEQCKVTETWLTEHIQDNLQVVAKCPGQ
FT LVTKHVVKGPCPHFQLYLSTHDEAKSYFSPLLGKYDKSRLNRAAFIKDLSKYAKPIYVG
FT EINYEIFDKAVERVISILRSVGMQQCMYVTDEEEIFNSLNMNAAVGALYTGKKKDYFKD
FT FSNEDRAEIVMRSCERIYNGQLGVWNGSPKAEIRPIEKTILNKTRTFTAAPLETLLGGK
FT VCVDDFNNQFYSHHLEGPWTVGITKFYGGWNRLLEKLPEGWIYCDADGSQFDSSLTPYL
FT INAVLHVRLHFMEEWELGAQMLRNLYTEIVYTPIATPDGSVIKKFKGNNSGQPSTVVDN
FT TLLVIIAFNYAMLSSGIPEDKIDNCCRMFANGDDLLLAVHPDYEYILDGFQNHFRNLGL
FT NFEFTSRTKDKSELRFMSTQGVKCEGIYIPKLERERIVAILEWDRSNLPEHRLEAICAA
FT MVEAWGYPDLVHEIRKFYAWLLEMQPFANLAKEGMAPYIAETALRNLYLGTGIKEEEIE
FT KYFRQFVKDLPGYVEDYNEEVIHQSGQADAGRQGGSGAQGGTPPAGSGGTGPGTQGNGG
FT QTGFQGSGGQQGSGGGTWSSSSWKQRRKSDRRLNGTAGQRDKDVDAGSAGKISVPKLKA
FT MSKKMRLPKAKGKDVLHLDFLLTYKPQQQDISNTRATRKEFDRWYDAIKKEYEIDDTPN
FT DSRHEWSDGLVHRKWLLTKHKRKLDDDGWGEQRVFPLKPVIENASPTFRQVMHHFSDAA
FT EAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEMTSRTPARAKEATHKIS"
FT mat_peptide <1. .239
FT /product="NIa-protease protein"
FT mat_peptide 240. .1802
FT /product="NIb polymerase protein"
FT mat_peptide 1803. .>2601
FT /product="coat protein"
XX
SQ Sequence 2601 BP; 850 A; 514 C; 621 G; 615 T; 1 other;
dq647656 Length: 2601 02-JUL-2006 Type: N Check: 2549 ..
1 tagttggaat acacagtctt gcatcaacga gtggaaacac aaacttcttt
51 gttgcaatgc ccgagaactt caatgaatat atatctaatc ttgtgcaaac
101 gaataagtgg gaaaggggat ggcattacaa cccaaatctt atttcttggt
151 gtggtctgaa cctagtcgat tcagcaccta aaggattatt cgaaacgtca
201 aagcttgttg aagatctgga tatgagtgtt gaagaacaat gcaaggtgac
251 agaaacatgg ttgacggaac acatccaaga taacctgcag gtcgtcgcaa
301 agtgtccagg ccaactcgta acaaaacatg ttgtcaaagg cccatgtcca
351 cacttccaac tatatttatc tacacacgat gaagcaaagt cgtatttctc
401 accattgctt ggaaagtatg acaagagtag gttgaacaga gcagcattta
451 tcaaagatct ctcaaagtat gcaaagccaa tttacgttgg agagatcaat
501 tacgaaatct ttgataaagc agttgagcga gttataagca tcctcagaag
551 tgtaggaatg caacagtgca tgtacgtgac ggacgaggaa gaaattttca
601 attcgttaaa catgaacgca gccgtaggtg cactctacac aggaaagaag
651 aaagactatt tcaaagattt ctcaaatgag gatagagctg aaattgtcat
701 gcgatcatgt gagcgcatct acaacggaca attaggtgtg tggaatgggt
751 cacccaaagc tgaaatacga cctatagaga aaaccatact gaacaagaca
801 cgcactttca cagcagcacc attggaaact ctacttggtg ggaaagtatg
851 tgtggacgat ttcaataatc aattttactc acaccatctt gaaggcccgt
901 ggaccgtagg aatcacaaaa ttttatggag grtggaaccg acttttggaa
951 aagctgccag aggggtggat ttactgcgat gcagatggat ctcagttcga
1001 cagctcacta actccatatc ttattaatgc tgtactgcac gttcgcttac
1051 atttcatgga agaatgggag ttgggagccc aaatgttgcg aaacttatac
1101 acagagattg tttacacgcc aatcgcaaca cctgatgggt ctgtcatcaa
1151 gaagtttaaa ggaaataata gtgggcaacc atctacagtc gtcgacaata
1201 cgctcttggt tatcatagca ttcaattatg caatgttatc aagtggcatt
1251 cctgaagaca agattgacaa ctgctgtaga atgtttgcaa acggtgacga
1301 cttactcttg gcagtgcatc cggattacga atacatattg gatggatttc
1351 aaaatcattt tagaaacctt ggccttaact ttgagttcac atcgaggaca
1401 aaggacaaat cagagttacg gttcatgtca acacaaggag tcaagtgtga
1451 aggtatctac ataccaaaac tcgaaaggga aagaatagtc gcaatccttg
1501 aatgggaccg atcgaacttg cctgagcatc gtcttgaagc tatctgtgca
1551 gccatggttg aagcatgggg ttacccagat ttagttcatg aaattcggaa
1601 attttatgcg tggcttcttg aaatgcaacc cttcgcgaac ctggcaaagg
1651 aaggcatggc gccatacata gcagaaacag cactccgcaa cctctacctt
1701 ggaacaggca tcaaagaaga agaaattgaa aaatatttta ggcagtttgt
1751 caaggatctt cctggatacg tagaagatta caatgaagaa gttattcatc
1801 aatctggtca agctgacgca gggagacagg gtggtagcgg cgctcaagga
1851 ggcacaccac cagcaggaag tggaggcact ggacctggca ctcaaggcaa
1901 tgggggtcag acgggatttc aaggaagtgg tggtcagcaa gggtccggtg
1951 ggggcacctg gtcaagtagc agctggaaac aacggcggaa gtcagacagg
2001 aggctcaatg ggacagctgg tcagagagat aaggacgttg acgcaggctc
2051 ggctggaaag atatccgtac caaagcttaa agccatgtca aagaaaatgc
2101 gcttgccaaa ggcaaaagga aaagacgtct tgcatttgga ctttttgttg
2151 acatacaaac cacaacagca ggacatatcg aacacaagag caacaaggaa
2201 agagtttgat agatggtacg acgccataaa gaaggagtat gagatcgatg
2251 atacaccaaa tgacagtcgt catgagtggt ctgatggtct ggtgcatcga
2301 aaatggttgc tcaccaaaca taaacggaaa ttggacgatg atggatgggg
2351 agaacaaaga gttttcccac taaaaccagt tattgaaaac gcatctccaa
2401 cttttcgaca agttatgcat catttcagtg atgcagctga agcgtatata
2451 gaatacagaa attctactga gcgatacatg ccaagatacg gacttcagcg
2501 aaatctcacc gactatagct tagcgcggta tgcttttgat ttctatgaaa
2551 tgacttcacg cacaccagct agagctaagg aagccacgca taaaatttcc
2601 g