Sequence of DPV Sugarcane mosaic virus
Sugarcane mosaic virus isolate Sc-UD1 polyprotein gene, partial cds.
ACC No: DQ647661
Dated: 2006-07-02 | Length: 2747 | CRC: 269333303
ID DQ647661; SV 1; linear; genomic RNA; STD; VRL; 2747 BP.
XX
AC DQ647661;
XX
DT 02-JUL-2006 (Rel. 88, Created)
DT 02-JUL-2006 (Rel. 88, Last updated, Version 1)
XX
DE Sugarcane mosaic virus isolate Sc-UD1 polyprotein gene, partial cds.
XX
KW .
XX
OS Sugarcane mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-2747
RA Reanwarakorn K., Warawichanee K., Klinkong S.;
RT "Sequence analysis of Sugarcane mosaic virus infecting sugarcane in
RT Thailand";
RL Unpublished.
XX
RN [2]
RP 1-2747
RA Reanwarakorn K., Warawichanee K., Klinkong S.;
RT ;
RL Submitted (12-MAY-2006) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Kasetsart University, Malaiman, Kamphaeng Saen, Nakhorn
RL Pathom 73140, Thailand
XX
FH Key Location/Qualifiers
FH
FT source 1. .2747
FT /organism="Sugarcane mosaic virus"
FT /specific_host="sugarcane"
FT /isolate="Sc-UD1"
FT /serotype="SCMV"
FT /mol_type="genomic RNA"
FT /country="Thailand:Udonthani province"
FT /db_xref="taxon:12224"
FT CDS <1. .>2747
FT /codon_start=3
FT /product="polyprotein"
FT /protein_id="ABG37683.1"
FT /translation="VGIHSLASTSGNTNFFVAMPENFNEYISNLVQTNKWERGWHYNPN
FT LISWCGLNLVDSAPKGLFKTSKLVEDLDMSVEEQCKVTETWLTEHIQDNLQVVAKCPGQ
FT LVTKHVVKGPCPHFQLYLSTHDEAKSYFSPLLGKYDKSRLNRAAFIKDLSKYAKPIYVG
FT EINYEIFDKAVERVISILRSVGMQQCMYVTDEEEIFNSLNMNAAVGALYTGKKKDYFKD
FT FSNEDRAEIVMRSCERIYNGQLGVWNGSLKAEIRPIEKTILNKTRTFTAAPLETLLGGK
FT VCVDDFNNQFYSHHLEGPWTVGITKFYGGWNRLLEKLPEGWIYCDADGSQFDSSLTPYL
FT INAVLHVRLHFMEEWELGAQMLRNLYTEIVYTPIATPDGSVIKKFKGNNSGQPSTVVDN
FT TLMVIIAFNYAMLSSGIPEDKIDNCCRMFANGDDLLLAVHPDYEYILDGFQNHFKKPLG
FT LNFEFTSRTKGTNQSYGFMSTQGVKVEGIYIPKLERERIVAILEWDRSNLPEHRLEAIC
FT AAMVEAWGYPDLVHEIRKFYAWLLEMQPFANLAKEGMAPYIAETALRNLYLGTGIKEEE
FT IEKYFRQFVKDLPGYVEDYNEEVIHQSGQADAGKQGGNGAQGGTPPAGSGGTGPGTQGN
FT GGQTGFQGSGGQQRSGGGTWSSSSWKQRRRSDRRLNGTAGQRDKDVDAGSAGKISVPKL
FT KAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQDISNTRATRKEFIDWYDAIKKEYEIDDT
FT PNDSRHEWSDGLVHRKWLLTKHKRKLDDDGWGEQRVFPLKPVIENASPTFRQVMHHFSD
FT AAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEMTSRTPARAKEAHMQMKAAA
FT VRGSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQQHH"
FT mat_peptide <1. .239
FT /product="NIa-protease protein"
FT mat_peptide 240. .1808
FT /product="NIb polymerase protein"
FT mat_peptide 1809. .2747
FT /product="coat protein"
XX
SQ Sequence 2747 BP; 897 A; 549 C; 662 G; 639 T; 0 other;
dq647661 Length: 2747 02-JUL-2006 Type: N Check: 6997 ..
1 tagttggaat acacagtctt gcatcaacga gtggaaacac aaacttcttt
51 gttgcaatgc ccgagaactt caatgaatat atatccaatc ttgtgcaaac
101 gaataagtgg gaaaggggat ggcattacaa cccaaatctc atttcttggt
151 gtggtctgaa cctagtcgat tcagcaccta aaggattatt caaaacgtca
201 aagcttgttg aagatctgga tatgagtgtt gaagaacaat gcaaggtgac
251 agaaacatgg ttgacggaac acatccaaga taacctgcag gtcgtcgcaa
301 agtgtccagg ccaactcgta acaaagcatg ttgtcaaagg cccatgtcca
351 cacttccaac tatatttatc tacacacgat gaagcaaagt cgtatttctc
401 accattgctt ggaaagtatg acaagagtag gttgaacaga gcagcattta
451 tcaaagatct ctcaaagtat gcaaagccaa tttacgttgg agagatcaat
501 tacgaaatct ttgataaagc agttgagcga gttataagca tcctcagaag
551 tgtaggaatg caacagtgca tgtacgtgac ggacgaggaa gaaattttca
601 attcgttaaa catgaacgca gccgtaggtg cactctacac aggaaagaag
651 aaagactatt tcaaagattt ctcaaatgag gatagagctg aaattgtcat
701 gcgatcatgc gagcgcatct acaacggaca attaggtgtg tggaatgggt
751 cactcaaagc tgaaatacga cctatagaga aaaccatact gaacaagaca
801 cgcactttca cagcagcacc attggaaact ctacttggtg ggaaagtatg
851 tgtggacgat ttcaataatc aattttactc acaccatctt gaaggcccgt
901 ggaccgtagg aatcacaaaa ttttatggag gatggaaccg acttttggag
951 aagctgccag aggggtggat ttactgcgat gcagatggat ctcagttcga
1001 cagctcacta actccatatc ttattaatgc tgtactgcac gttcgcttac
1051 atttcatgga agaatgggag ttgggagccc aaatgttgcg aaacttatac
1101 acagagattg tttacacgcc aatcgcaaca cctgatgggt ctgtcatcaa
1151 gaagtttaaa ggaaataata gtgggcaacc atctacagtc gtcgacaata
1201 cgctcatggt tatcatagca tttaattatg caatgttatc aagtggcatt
1251 cctgaagaca aaattgacaa ctgctgtaga atgtttgcaa acggtgacga
1301 cttactcttg gcagtgcatc cggattacga atacatattg gatggatttc
1351 aaaatcattt taagaaaccc ttgggtctta actttgagtt cacatcgagg
1401 acaaaaggga caaatcagag ttatgggttc atgtcaacac aaggagtcaa
1451 agtggaaggt atctacatac caaaactcga aagggaaaga atagtcgcaa
1501 tccttgaatg ggaccgatcg aacttgcctg agcatcgtct tgaagctatc
1551 tgtgcagcca tggttgaagc atggggttac ccagatttag ttcatgaaat
1601 tcggaaattt tatgcgtggc ttcttgaaat gcaacccttc gcgaacctgg
1651 caaaggaagg catggcgcca tacatagcag aaacagcact ccgcaacctc
1701 taccttggaa caggcatcaa agaagaagaa attgaaaaat attttagaca
1751 gtttgtcaag gatcttcctg gatacgtaga agattacaat gaagaagtta
1801 ttcatcaatc tggtcaagct gacgcaggga aacagggtgg taacggcgct
1851 caaggaggca caccaccagc aggaagtgga ggcactggac ctggcactca
1901 aggcaatggg ggtcagacgg gatttcaagg aagtggtggt caacaaaggt
1951 ccggtggggg cacctggtca agtagcagct ggaaacaacg gcggaggtca
2001 gacaggaggc tcaatgggac agctggtcag agagataagg acgttgacgc
2051 aggctcggct ggaaagatat ccgtaccaaa gcttaaagcc atgtcaaaga
2101 aaatgcgctt gccaaaggca aaaggaaaag acgtcttgca tttggacttt
2151 ttgttgacat acaaaccaca acagcaggac atatcgaaca caagagcaac
2201 aaggaaggag tttatagatt ggtacgacgc cataaagaag gagtatgaga
2251 tcgatgatac accaaatgac agtcgtcatg agtggtctga tggtctggtg
2301 catcgaaaat ggttgctcac caaacataaa cggaaattgg acgatgatgg
2351 atggggagaa caaagagttt tcccactaaa accagttatt gaaaacgcat
2401 ctccaacttt tcgacaagtt atgcatcatt tcagtgatgc agctgaagcg
2451 tatatagaat acagaaattc tactgagcga tacatgccaa gatacggact
2501 tcagcgaaat ctcaccgact atagcttagc gcggtatgct tttgatttct
2551 atgaaatgac ttcacgcaca ccagctagag ctaaggaagc ccacatgcag
2601 atgaaagccg cagcagttcg tggttcaaac acacgactgt tcggcttgga
2651 cggaaatgtc ggcgagactc aggagaatac agagagacac acagctggcg
2701 acgttagtcg caatatgcac tctctgttgg gagtgcagca acaccac