Sequence of DPV Sugarcane mosaic virus

Sugarcane mosaic virus isolate Mz-KB1 polyprotein gene, partial cds.

ACC No: DQ647663

Dated: 2006-07-02 | Length: 939 | CRC: 745940681

                
ID   DQ647663; SV 1; linear; genomic RNA; STD; VRL; 939 BP.
XX
AC   DQ647663;
XX
DT   02-JUL-2006 (Rel. 88, Created)
DT   02-JUL-2006 (Rel. 88, Last updated, Version 1)
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DE   Sugarcane mosaic virus isolate Mz-KB1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-939
RA   Reanwarakorn K., Warawichanee K., Klinkong S.;
RT   "Sequence analysis of Sugarcane mosaic virus infecting maize in Thailand";
RL   Unpublished.
XX
RN   [2]
RP   1-939
RA   Reanwarakorn K., Warawichanee K., Klinkong S.;
RT   ;
RL   Submitted (12-MAY-2006) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, Kasetsart University, Malaiman, Kamphaeng Saen, Nakhorn
RL   Pathom 73140, Thailand
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FH   Key             Location/Qualifiers
FH
FT   source          1. .939
FT                   /organism="Sugarcane mosaic virus"
FT                   /specific_host="maize"
FT                   /isolate="Mz-KB1"
FT                   /serotype="SCMV-MDB"
FT                   /mol_type="genomic RNA"
FT                   /country="Thailand:Kanchanaburi province"
FT                   /db_xref="taxon:12224"
FT   CDS             <1. .>939
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ABG37685.1"
FT                   /translation="SGQADAGRQGGSGAQGGTPPAGSGGTGPGTQGNGGQTGFQGSGGQ
FT                   QGSGGGTGQVAAGNNGGGQTGGSNGTXGQRDKDVDAGSAGKISVPKLKAMSKKMRLPKA
FT                   KGRDVLHLDFLLTYKPQQQDISNTRALKEEFDRWYDAIKKEYEIDDTQMTVVMSGLMVW
FT                   CIENGCSPNINGNWTMMDGDEQRVFPLKPVIENASPTFRQVMHHFSDAAEAYIEYRNST
FT                   ERYMPRYGLQRNLTDYSLARYAFDFYEMTSRTPARAKEAHMQMKAAAVRGSNTRLFGLD
FT                   GNVGETQENTERHTAGDVSRNMHSLLGVQQHH"
FT   mat_peptide     1. .939
FT                   /product="coat protein"
XX
SQ   Sequence 939 BP; 293 A; 195 C; 262 G; 188 T; 1 other;

dq647663 Length: 939  02-JUL-2006  Type: N  Check: 4000  ..

       1  tctggtcaag ctgacgcagg gagacagggt ggtagcggcg ctcaaggagg
      51  cacaccacca gcaggaagtg gaggcactgg acctggcact caaggcaatg
     101  ggggtcagac gggatttcaa ggaagtggtg gtcaacaagg gtccggtggg
     151  ggcactggtc aagtagcagc tggaaacaac ggcggaggtc agacaggagg
     201  ctctaatggg acagntggtc agagagataa ggacgttgac gcaggctcgg
     251  ctggaaagat atccgtacca aagcttaaag ccatgtcaaa gaaaatgcgc
     301  ttgccaaagg caaaaggaag agacgtcttg catttggact ttttgttgac
     351  atacaaacca caacagcagg acatatcgaa cacaagagca cttaaggaag
     401  agtttgatag atggtacgac gccattaaga aggagtatga gatcgatgat
     451  acacaaatga cagtcgtcat gagtggtctg atggtctggt gcatcgaaaa
     501  tggttgctca ccaaacataa acggaaattg gacgatgatg gatggggatg
     551  aacaaagagt tttcccacta aaaccagtta ttgaaaacgc atctccaact
     601  tttcgacaag ttatgcatca tttcagtgat gcagctgaag cgtatataga
     651  atacagaaat tctactgagc gatacatgcc aagatacgga cttcagcgaa
     701  atctcaccga ctatagctta gcgcggtatg cttttgattt ctatgaaatg
     751  acttcacgca caccagctag agctaaggaa gcccacatgc agatgaaagc
     801  cgcagcagtt cgtggttcaa acacacgact gttcggcttg gacggaaatg
     851  tcggcgagac tcaggagaat acagagagac acacagctgg cgacgttagt
     901  cgcaatatgc actctctgtt gggagtgcag caacaccac