Sequence of DPV Barley yellow dwarf virus-MAV

Barley yellow dwarf virus - MAV isolate MAV27P5o03 coat protein gene, partial cds; and 17k probable movement protein (MP) gene, complete cds.

ACC No: DQ680126

Dated: 2007-01-23 | Length: 783 | CRC: 1049499916

                
ID   DQ680126; SV 1; linear; genomic RNA; STD; VRL; 783 BP.
XX
AC   DQ680126;
XX
DT   27-SEP-2006 (Rel. 89, Created)
DT   23-JAN-2007 (Rel. 90, Last updated, Version 4)
XX
DE   Barley yellow dwarf virus - MAV isolate MAV27P5o03 coat protein gene,
DE   partial cds; and 17k probable movement protein (MP) gene, complete cds.
XX
KW   .
XX
OS   Barley yellow dwarf virus - MAV
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Luteovirus.
XX
RN   [1]
RP   1-783
RA   Robertson N.L., French R.;
RT   "Genetic analysis of a novel Alaska barley yellow dwarf virus in the family
RT   Luteoviridae";
RL   Arch. Virol. 152(2):369-382(2006).
XX
RN   [2]
RP   1-783
RA   Robertson N.L., French R.;
RT   ;
RL   Submitted (08-JUN-2006) to the EMBL/GenBank/DDBJ databases.
RL   Arctic Plant Germplasm Research and Introduction, United States Dept. of
RL   Agriculture, Agricultural Research Service, 533 E. Fireweed Ave., Palmer,
RL   AK 99645, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .783
FT                   /organism="Barley yellow dwarf virus - MAV"
FT                   /specific_host="Avena sativa L."
FT                   /isolate="MAV27P5o03"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Alaska, Palmer"
FT                   /isolation_source="leaf tissue from infected oats at site
FT                   5"
FT                   /collection_date="2003"
FT                   /db_xref="taxon:12038"
FT   CDS             194. .>783
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q06Q58"
FT                   /db_xref="UniProtKB/TrEMBL:Q06Q58"
FT                   /protein_id="ABG77613.1"
FT                   /translation="MNSVGLNSRKRKRNGQPKRTRTIRTVVMAQPARTRTRRRGRRRAR
FT                   GGWPNSISRPTGRTEIFIFSVNDIKANSTGVIKFGPDLSQCTALSGGILKSYHRYKISN
FT                   VKVEFKSHASSTTVGAMFIELDTSCTQSTLGSYINSFTLSKSGTKAFGPRQIGGEDFRE
FT                   STVNQFYMLYKANGSTSDTAGQFIITIRVWNINP"
FT   gene            234. .692
FT                   /gene="MP"
FT   CDS             234. .692
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="17k probable movement protein"
FT                   /note="ORF4"
FT                   /db_xref="UniProtKB/TrEMBL:Q06Q57"
FT                   /protein_id="ABG77614.1"
FT                   /translation="MDNQNALEQFGQWLWHSPPEQEPDDEVVDAQEEDGQILYLDQQAG
FT                   LRYSYSQSTTLKPTPQGSSNSAPIFRNAQRFQVEYLSPTTVTRSQTSRLSLSHTRPPLQ
FT                   SAQCLLNSTLRAHNQPWVATLTHSPSQNPEPKRSALARLVGKTSGKAR"
XX
SQ   Sequence 783 BP; 248 A; 198 C; 157 G; 180 T; 0 other;

dq680126 Length: 783  23-JAN-2007  Type: N  Check: 719  ..

       1  aaagtgtgaa ggtgacatct ccacatctgc aatcaatact ccttgcaata
      51  ccacaaacat ccccgcaata tagctattaa ttaccaaatc ttagccggat
     101  ttggcatagg gtttattata tctattccct gtacattagc tctcacgtac
     151  tttgtgtaca ataaagtttc agacaccact agagaggtgg tgaatgaatt
     201  cagtaggcct taattccaga aagaggaaga gaaatggaca accaaaacgc
     251  actcgaacaa ttcggacagt ggttatggca cagcccgcca gaacaagaac
     301  cagacgacga ggtcgtagac gcgcaagagg aggatggcca aattctatat
     351  ctagaccaac aggcaggact gagatattca tattctcagt caacgacatt
     401  aaagccaact ccacaggggt catcaaattc ggccccgatc tttcgcaatg
     451  cacagcgctt tcaggtggaa tacttaagtc ctaccaccgt tacaagatct
     501  caaacgtcaa ggttgagttt aagtcacacg cgtcctccac tacagtcggc
     551  gcaatgttta ttgaactcga cacttcgtgc acacaatcaa ccttgggtag
     601  ctacattaac tcattcaccc tctcaaaatc cggaaccaaa gcgttcggcc
     651  ctcgccagat tggtggggaa gacttcaggg aaagcacggt gaaccaattt
     701  tacatgctct acaaagccaa cggatcaacc tcagatacag ctggtcaatt
     751  catcatcacg atcagagttt ggaacataaa ccc