Sequence of DPV Tomato yellow fruit ring virus

Tomato yellow ring virus strain TYRV-CI nucleocapsid (N) gene, complete cds.

ACC No: DQ788693

Dated: 2007-05-12 | Length: 1152 | CRC: -141397928

                
ID   DQ788693; SV 1; linear; genomic RNA; STD; VRL; 1152 BP.
XX
AC   DQ788693;
XX
DT   27-FEB-2007 (Rel. 90, Created)
DT   12-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Tomato yellow ring virus strain TYRV-CI nucleocapsid (N) gene, complete
DE   cds.
XX
KW   .
XX
OS   Tomato yellow ring virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN   [1]
RP   1-1152
RA   Rasoulpour R., Izadpanah K.;
RT   "Characterization of cineraria strain of Tomato yellow ring virus from
RT   Iran";
RL   Australas. Plant Pathol. 36(3):285-294(2007).
XX
RN   [2]
RP   1-1152
RA   Rasoulpour R., Izadpanah K.;
RT   ;
RL   Submitted (20-JUN-2006) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, Plant Virology Center, Shiraz, Fars 71444, Iran
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1152
FT                   /organism="Tomato yellow ring virus"
FT                   /segment="S"
FT                   /specific_host="cineraria"
FT                   /strain="TYRV-CI"
FT                   /mol_type="genomic RNA"
FT                   /country="Iran:Fars province"
FT                   /identified_by="R. Rasoulpour and K. Izadpanah"
FT                   /note="acronym: TYRV; PCR_primers=fwd_name: AT, rev_name:
FT                   UHP"
FT                   /db_xref="taxon:304859"
FT   gene            complement(1. .1152)
FT                   /gene="N"
FT   CDS             complement(270. .1094)
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid"
FT                   /note="coat protein"
FT                   /protein_id="ABH05392.1"
FT                   /translation="MSTARVSKENIEKLLAGGEADVVIEAEETAGFNFKEFVLANKAMK
FT                   MTFNNGYTILRNRAGIYRMVKAGQFKFQGNPIIVPSATVSAGQDDWTFRRLEGFIRAKM
FT                   FMELIAVENTSEQQKMYEKLCELPMVNAYGLKPSPKFDATTARVMLTLGGPLPLMASLD
FT                   KFAATAFPLAYFQNVKKETLGISKFSTYEQLCKIARVMATKEFTFTGVSKDIFEETIKI
FT                   LNDCTPGTAGAASLNKFNEQIKALESAFGKIVDDNGAGSSKPKPSSKKDDAF"
XX
SQ   Sequence 1152 BP; 349 A; 220 C; 191 G; 392 T; 0 other;

dq788693 Length: 1152  12-MAY-2007  Type: N  Check: 8141  ..

       1  gttgttttgg ttttttgttt tttgattttt ttggtttcca taaacttatt
      51  tcaacaccct tgagtatatt tgaacacaca attaaatgta ataaacaact
     101  aaaacttaaa cacactgata aactatatag cacacaaaaa actgaaataa
     151  aatatttaaa tatatataag taataaaaca cacaatgact agaagtactt
     201  tagtaatctt aaatactata taatactgag taatagcagg aaatgctttt
     251  taatcagtaa aagcactcat taaaatgcat catccttttt ggaggatggt
     301  ttaggttttg aagacccagc accattatcg tcaacaattt tcccaaaagc
     351  actttcaaga gctttaattt gctcattgaa cttattcaat gaagcagcac
     401  cggcagtccc tggagtacag tcattgagaa tttttatggt ttcttcaaaa
     451  atgtctttgg aaaccccagt gaaagtgaat tctttagttg ccataactcg
     501  ggcaatcttg caaagctgtt cataagttga aaatttgctt attcccaaag
     551  tttccttttt tacattctgg aaataagcca atggaaatgc agttgcagca
     601  aacttatcaa gacttgccat caaggggaga gggcctccta gtgttagcat
     651  gactctagct gtagttgcat caaatttagg gctaggtttt aaaccatatg
     701  cgtttaccat tggaagctca caaagttttt catacatttt ctgttgctcg
     751  cttgtgttct ccacagcaat cagttccatg aacattttgg ctcttatgaa
     801  gccttctaac cttctgaatg tccaatcatc ttgaccagcg ctcacagttg
     851  cactgggaac aataatagga ttgccttgga atttaaattg gcctgctttc
     901  accattctgt aaatacctgc tctgttcctt aaaattgtgt aaccgttatt
     951  gaacgtcatt ttcatggctt tgttagccaa aacaaactct ttgaagttga
    1001  atcctgcagt ttcttcagct tcaatcacta catctgcttc accaccagca
    1051  agaagcttct caatgttctc tttgctcact cgtgcggtag acatggtgtt
    1101  tacttaggaa gcagcttact ttgtggaagt tgtttgaatt taatgtgtta
    1151  ta