Sequence of DPV Squash vein yellowing virus
Squash vein yellowing virus polyprotein gene, partial cds.
ACC No: DQ812125
Dated: 2007-01-31 | Length: 1311 | CRC: -1384608444
ID DQ812125; SV 1; linear; genomic RNA; STD; VRL; 1311 BP.
XX
AC DQ812125;
XX
DT 31-JAN-2007 (Rel. 90, Created)
DT 31-JAN-2007 (Rel. 90, Last updated, Version 1)
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DE Squash vein yellowing virus polyprotein gene, partial cds.
XX
KW .
XX
OS Squash vein yellowing virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus; unclassified Ipomovirus.
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RN [1]
RP 1-1311
RA Adkins S., Webb S.E., Achor D., Roberts P.D., Baker C.A.;
RT "Identification and characterization of a novel whitefly-transmitted member
RT of the family potyviridae isolated from cucurbits in Florida";
RL Phytopathology 97:145-154(2007).
XX
RN [2]
RP 1-1311
RA Adkins S., Vanderspool M.C., Sims K.;
RT ;
RL Submitted (22-JUN-2006) to the EMBL/GenBank/DDBJ databases.
RL Agricultural Research Service, United States Department of Agriculture,
RL United States Horticultural Research Laboratory, 2001 South Rock Road, Fort
RL Pierce, FL 34945, USA
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FH Key Location/Qualifiers
FH
FT source 1. .1311
FT /organism="Squash vein yellowing virus"
FT /specific_host="Cucurbita pepo (squash)"
FT /isolate="Florida"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /virion
FT /db_xref="taxon:397544"
FT CDS <1. .1095
FT /codon_start=1
FT /product="polyprotein"
FT /note="includes putative NIb/CP cleavage site and CP"
FT /protein_id="ABH09630.1"
FT /translation="GEIELQAFDLAAKEAEIQKLRDEWDANKPSVTLSPFAAKKIQNPL
FT AEKVKELLKEIEDAGEKTKKRPCGEPNEGEEDSDGEDEAKDKGKNVTTPDKKQILKGGG
FT SSKPIVKRDDVDNIPTNALEFKKDFKPARVSRTGFTWIPRSQRDNLTPEVVKNFLAYVP
FT PSQAIDNQMASGSEVESWAIRTAEAYGITIQSFYETILPAWIVNCIINGTSEERKSEST
FT WRAVELNNKGEDVDDMEYPMEPIFKHALPTMRKIMRNFSDQAILMYQNSVQQGKAFNVK
FT AARNAGYTRVEDLWLGIDFMAESQLSRHQLNIKHQILAANVGRADKRLFALSAPGEEGR
FT VNTERHTTNDVSADRHSYSGAALT"
FT mat_peptide 19. .1092
FT /product="coat protein"
FT /note="CP"
FT 3'UTR 1096. .1311
XX
SQ Sequence 1311 BP; 437 A; 252 C; 307 G; 315 T; 0 other;
dq812125 Length: 1311 31-JAN-2007 Type: N Check: 437 ..
1 ggggaaattg agctgcaagc ttttgatctt gccgcgaaag aagctgaaat
51 tcaaaaattg cgagacgagt gggatgccaa caaaccgtct gtaacattaa
101 gcccatttgc agcaaagaaa atacagaatc cattagctga aaaagtcaaa
151 gagctattga aagagattga agatgcgggt gagaaaacca agaagagacc
201 gtgtggtgag cctaacgaag gagaggaaga ttctgatgga gaggacgaag
251 ctaaagacaa gggaaagaac gttaccactc ctgacaagaa gcaaattttg
301 aagggtggtg gttcctcgaa gccaatcgtg aaaagggatg atgtggacaa
351 tatcccaaca aatgctttgg aattcaagaa agattttaaa cctgcaaggg
401 tttcaagaac tgggttcacc tggataccta gatcacaacg tgataatctc
451 acacctgaag ttgtgaaaaa ctttcttgca tatgttccac catcacaggc
501 gattgacaat cagatggctt cagggtcgga agtggaaagt tgggctatca
551 gaacagctga agcttatgga atcaccatac agtcatttta cgagacaatc
601 ctacctgcgt ggattgttaa ctgcatcatt aatgggacaa gtgaagagag
651 aaagtccgag tccacgtgga gagccgtgga actcaataat aaaggcgaag
701 atgtggacga tatggagtac ccaatggaac ccatatttaa acatgctctc
751 ccaaccatga ggaagattat gagaaatttt tctgaccaag caatcctcat
801 gtatcagaac agtgtccagc aaggaaaagc attcaatgtc aaggcagcaa
851 ggaatgctgg atacacacgg gttgaagatc tatggcttgg catagacttc
901 atggctgagt cgcagctatc ccgtcatcag ctcaatatca aacatcagat
951 attagcagcc aatgtgggca gagctgataa gcgactattt gccctctcag
1001 cgcctggaga ggaaggacgc gtaaacactg agcgtcacac taccaacgac
1051 gtgagcgcgg ataggcactc ttattctgga gccgctctta cttgacgtcg
1101 ttgaaggccg aggtactgtt cggtgaatta tctatctatt aataaataaa
1151 tatttaatct tacgcagtac ccaccagata tgtaatattt tggaatttga
1201 ttatgtatct gtgaaagccg cttatacata tttctattcc tctattacag
1251 tttggtttat cccgtgatga atagaaatat tctctatgga ttccaaaaaa
1301 aaaaaaaaaa a