Sequence of DPV Thottapalayam virus
Thottapalayam virus strain VRC 66412 segment L, complete sequence.
ACC No: DQ825770
Dated: 2007-08-28 | Length: 6581 | CRC: 49559035
ID DQ825770; SV 1; linear; viral cRNA; STD; VRL; 6581 BP.
XX
AC DQ825770;
XX
DT 24-JUN-2007 (Rel. 92, Created)
DT 28-AUG-2007 (Rel. 93, Last updated, Version 3)
XX
DE Thottapalayam virus strain VRC 66412 segment L, complete sequence.
XX
KW .
XX
OS Thottapalayam virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus.
XX
RN [1]
RP 1-6581
RX PUBMED; 17711577.
RA Yadav P.D., Vincent M.J., Nichol S.T.;
RT "Thottapalayam virus is genetically distant to the rodent-borne
RT hantaviruses, consistent with its isolation from the Asian house shrew
RT (Suncus murinus)";
RL (er) Virol. J. 4 (1), 80 (2007)
XX
RN [2]
RP 1-6581
RA Yadav P.D., Vincent M.J., Nichol S.T.;
RT ;
RL Submitted (27-JUN-2006) to the EMBL/GenBank/DDBJ databases.
RL Special Pathogens Branch, Centers for Disease Control and Prevention, 1600
RL Clifton Road, Atlanta, GA 30333, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .6581
FT /organism="Thottapalayam virus"
FT /segment="L"
FT /strain="VRC 66412"
FT /mol_type="viral cRNA"
FT /country="India:Vellore, Tamil Nadu"
FT /isolation_source="Suncus murinus"
FT /collection_date="1964"
FT /db_xref="taxon:262967"
FT primer_bind 1. .19
FT CDS 63. .6515
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /db_xref="GOA:A6MD74"
FT /db_xref="UniProtKB/TrEMBL:A6MD74"
FT /protein_id="ABH09886.1"
FT /translation="MQRYYEIRDRIHGLEPGGVGAIECIDLLDSLYAIRHDLIDEMIKH
FT DWSDNKDKETPISDVLIYAGIPLDLITGMEKIRITDHPTGKTLHQFFKSTPDNYKIEGN
FT IIKFIEVTVTVDVDKGIYEKKKKYQGGFNQIQVELDKYWQQGKLPNKYTITYDIVAVKA
FT DGSNLSTQWPSTRSPGVVQHMRMVQAEIQYVRERLIRSNEKSALESMFNLKFHTHVERE
FT FKYVLPEYPDVPDCEADQDRLLSHLKGWLTKKQTFSFHEVTGERISQAFKKYEAEQEDM
FT YPKSRKPRNFLLLQIGLQSEYNPMTISMAQVDTKLAASIIISEPPETPVQALVKDVCYN
FT YMMLDNIEINNYYSPAHLFDKTRNVPEPGCLKINMSSLDEASKSIIEQTKGSQDKGSSE
FT IESLHPWAQSEANTSISIIEKILTNLEMHVATDAEDITSYRKRSPVDTLLERFIKSETE
FT KYLIKVLKKTVGWHLGHLVRDVTESMIAHAGLKRSKFWSLSGFHQGNVLLIMMPSKSLE
FT VSNAHVRFILVHKEGFGCVDPDNIDSRKSINGVIWVYSKPMTLDLNRLLALNICFEKAF
FT LATAVWFQYFTEDQGMFPLQSSIKSVFAYKLLLAMTQKMKVCALFDNLRYLIPSCTASY
FT SGAASLIEKFVKRPFKSSLEVYVYVKSKELLISLAQNNKFRYYSKVRMLGLTVDQSSVG
FT ATGIYPSLVCHTVYRHYKSLISEITTCFFLFEKGLHGTMTEEAKIHLETVEWANNFKGK
FT EMKYGKDLVESGYDIEQLIDGEIIPEQQLYCKNVIKLATIELNKVLTSKSQVISNSIMN
FT KHWEEPYFSQTRNISLKGMSGELQEDGHLASSYTLIEAIRYLNKAKRNPTVLELYNETR
FT DIRAQARIVRKHQRTEADRGFFITTLPTRVRLEIIEDYFDSISKNVQEEYISYGGEKKI
FT LQIQGSLEKALRWASGTSTISLSTGEQITFKRKLMYVSADATKWSPGDNSAKFRLFTSH
FT IHDGLKDRRLKHCVIDALKGIYETEFFISRRLRGYIENMEKLEHNVQEFLDFFDHSKGR
FT SGLVRGNWLQGNLNKCSSLFSVAISFLFKEMWSKLFPELDCFIEFAHHSDDALFIYGYL
FT EPEGDGSDWYLYVTQKIQAGELYWHSVNTEMWKTMFNMHEYLLLLGSVKVSPKKTTVSP
FT TNAEFLSTFFEGCAVSIPFSKILLGALSDLPGLGFFDDLAASQSRCVKALDMGASPQVA
FT QLAVNLTNSKVERLYGTAPGMANNPCNYIDLDRDKIPICLGGIGSSSILELATAGIGMS
FT DKLVLKNALISFRHTKQLKDKYILGIYKFLMLLAQETFQHERLGEFSFLGKVQWKVFIP
FT KNEFEFSNLFSINYLSQWSAEHPVYDYIIPQLRDDLLVYLVRKLNDPSIVTAMTLQSPL
FT QLRFRMQAKQHLPVCKYNDNWVTFRTVLAAAHEYALKYVPNEIDLDLFNTLVSCTFSKE
FT FAWKDFISNTECEVIMSRKIHRAKVARVFTVKERDQIIQNPISVVIAYKFAVGTNEIKD
FT VLDKAKFPDSLSSDLKLLYEGVYRELGLDINDPSVMKRVAPMLYKTSRSRIVIVNGNVE
FT GTAESICTYWLRSISYVKQIKIIPHAEVLKAVSIFSKGEFIQEDKQLAALRLCIEIWRW
FT GKYNRVDINDWFAALWFEGKTLWDWLYYFQRKGVPLVDPEIQCAGLMMYDLLRDMTCLQ
FT MHANRRAYSGKQYDAYCMQTYNEETKLYEGDLRVVFNFGIDCARLEIFWEKQTYILETS
FT ITSKPVLRVLMQEVSTELQRCGLKFDTIQSIGFKSVVLFKTDSGFEWGKPNVPCIIFKN
FT CALRPNLRNKQVLNKEFIITILDNGFKAIAQQDLDSNRFQLAHAYHNLRDIRYQALETV
FT NTVNFTVDGKILYLNPIIAAGLIENFMKGLPAVIPPQAYSLIMKKAKITVDLFMFNKLL
FT GLINPENTFNMDGIESDDPEYSTVTTLSVKDWAEEKDIEDAEVEDDEYVIDLNDIDFDK
FT VDTLADIQHFLQDESAYTADLVIDTEATESKRVRGIVKLLEPIKLIKSWVSKGLAIEKI
FT YDPLAVILVTRYFSKQYSFSKVPLAQLDPYNLTELESIVRGWGELVCDQFYELDQQAHA
FT FIQRTNKAPEDLTPDSLFSFRHAELLFSRLFLPDTVSVFY"
FT primer_bind complement(6562. .6581)
XX
SQ Sequence 6581 BP; 2169 A; 1050 C; 1341 G; 2021 T; 0 other;
dq825770 Length: 6581 28-AUG-2007 Type: N Check: 9409 ..
1 tagtagtaga ctccggaagt agacaataga gaaaacacca gcaatacata
51 cctgcattca agatgcagag atattatgag attagagata ggatacacgg
101 ccttgagcca gggggtgtag gggcaattga atgcattgat ctcctagact
151 ctttatatgc tataaggcat gatctaattg atgagatgat aaagcatgat
201 tggtctgata acaaggacaa ggaaacacct atatctgatg tgttgatcta
251 tgcaggtatt cctctagatc tgattacagg tatggaaaaa atcagaatta
301 cagatcatcc tacagggaag acactgcacc agtttttcaa atccacacct
351 gataattaca aaattgaggg caatattatc aagttcatag aggtgacagt
401 gactgtcgat gtagacaaag gtatatatga aaaaaagaaa aaataccagg
451 gcggatttaa ccagattcaa gtggaattgg ataaatattg gcagcaaggt
501 aaattgccta acaagtatac aataacatat gatattgtag cagttaaagc
551 tgatgggtct aacttatcga cgcagtggcc tagtacacga tcaccagggg
601 ttgttcaaca tatgagaatg gtgcaagctg aaattcagta tgtaagagaa
651 agacttataa gaagtaatga aaaaagtgcc cttgaatcca tgtttaacct
701 taaatttcat acacatgttg agcgggagtt caagtatgtc ctgccggagt
751 acccagatgt tcctgattgt gaggccgacc aggacagact cctttcacat
801 ctgaaaggat ggcttactaa gaagcagact ttttcttttc atgaggtcac
851 tggtgaaaga ataagtcaag ccttcaaaaa atatgaggct gaacaagaag
901 atatgtaccc aaaatcacgg aaaccgagaa attttctact cttgcaaatt
951 ggattacaat ctgagtataa tcctatgact atatctatgg cacaggttga
1001 cacaaaattg gctgctagta tcatcatcag tgagccacct gaaacacctg
1051 tacaggctct tgtaaaggat gtttgttata actacatgat gttagataat
1101 atcgaaatta ataattatta tagtccagct catttatttg acaaaactag
1151 aaatgtccca gaaccaggtt gtctaaaaat caatatgagt tcattggatg
1201 aagcatcaaa aagtatcata gagcaaacta aaggttccca ggataaagga
1251 agctctgaaa tagagtcact tcacccttgg gctcagtcag aggctaatac
1301 atctattagt attatagaaa agatcctaac aaaccttgaa atgcatgtgg
1351 caactgatgc tgaagatata actagttata gaaaaaggtc ccctgtagac
1401 acactcctag aaagatttat aaaaagtgaa acagaaaaat acttgattaa
1451 agttttaaag aaaactgtag gttggcatct agggcactta gtgagggatg
1501 tgactgagag catgatcgct catgcaggtt taaaaaggtc aaagttttgg
1551 tcactctcag gttttcatca aggtaatgtt ctgttaatta tgatgccgtc
1601 aaaatcacta gaagtctcta atgctcatgt aagattcatt ctagttcaca
1651 aagagggttt tggctgtgta gatcctgaca atattgattc aaggaagtcc
1701 atcaatggtg tgatttgggt atactcaaaa ccaatgacac ttgatctcaa
1751 caggcttctt gccctaaata tttgctttga gaaggcattc ttagcaactg
1801 cagtttggtt tcagtatttc actgaggatc aaggtatgtt tcctttacag
1851 tcctcaatca agagtgtctt tgcttataag ctacttcttg caatgacaca
1901 aaagatgaag gtctgtgcac tgtttgataa tcttaggtat cttataccat
1951 catgcacggc tagttattcc ggtgctgcta gcctcattga aaaatttgtg
2001 aaaagaccat ttaagagctc attggaagta tatgtttatg taaaatcaaa
2051 agagctactg attagccttg ctcaaaacaa taaattcagg tattactcaa
2101 aagtaagaat gttaggttta acagttgatc aatcaagcgt tggtgcaact
2151 ggaatatatc cttctttagt ttgtcacacg gtataccggc attacaagtc
2201 acttatctca gaaataacta cttgcttttt cttgtttgaa aaaggtcttc
2251 atggtacaat gacagaagaa gctaagattc acctagagac tgttgaatgg
2301 gcaaataatt ttaagggtaa agagatgaaa tatggcaaag acctagttga
2351 gtctggttat gatattgaac aattaattga tggtgaaatt attcccgaac
2401 agcagttata ctgtaaaaat gttataaagt tggctacaat tgaactaaat
2451 aaggtcttaa catcaaaaag tcaagtcatc tccaattcaa tcatgaataa
2501 acattgggaa gaaccttact ttagccagac taggaacata agcctaaagg
2551 gtatgtctgg agaattacaa gaagatggtc acttagcatc tagctacact
2601 ttaattgaag cgatacgcta tctgaacaag gcaaagcgaa atccaacagt
2651 gctagaactt tataatgaaa ctagagatat tcgtgcacag gctaggatag
2701 taagaaaaca tcaaagaaca gaagctgata gaggtttttt tattactaca
2751 ttaccaaccc gagttagact cgagattatt gaggattatt ttgattctat
2801 atcaaagaat gttcaggagg agtatatttc ttatggaggt gagaagaaaa
2851 tccttcagat tcagggttct ctagaaaaag cattaagatg ggcctctggg
2901 acaagtacta tatctttatc aacaggtgaa caaataacat tcaaaaggaa
2951 gctaatgtat gtaagtgcag atgcaacgaa atggtcacct ggagataatt
3001 cagcaaaatt ccgactattt acatcacata tccatgatgg tttaaaggat
3051 agacgattaa agcattgtgt cattgatgca ctgaaaggta tttatgaaac
3101 agagtttttt atttcaaggc gattaagagg ctatattgaa aatatggaga
3151 agttagagca taatgttcaa gagtttttag atttttttga ccattcaaaa
3201 ggtagatcag gtctcgtgag gggtaactgg ttgcagggaa acttaaataa
3251 gtgctcttca ttattctctg ttgctataag ttttctattt aaagagatgt
3301 ggtcaaaact atttcctgaa ttagactgtt ttattgagtt tgcccatcac
3351 tctgatgatg ctttgtttat ttatggttat ttggagcctg aaggtgatgg
3401 atctgattgg tacttatatg ttactcaaaa gatacaagca ggtgagctat
3451 attggcattc tgtcaataca gaaatgtgga agacaatgtt caatatgcat
3501 gaatatctac tactgttggg ctctgtaaag gtctctccta agaaaactac
3551 tgtttcacca actaatgctg aatttttatc aacatttttt gaaggctgtg
3601 cagtttctat tccattttca aagatcttat taggtgcact atctgatttg
3651 cctggtttag gtttctttga tgacttggct gcatcacagt ctcgttgtgt
3701 aaaagctcta gacatgggag catcacctca ggttgcccag ttagcagtta
3751 atttaacaaa ttccaaggtt gagcgattgt atggtactgc accaggtatg
3801 gcaaacaatc cttgtaacta tatagacctt gatcgagata agatacctat
3851 atgtttaggt ggtattggct cttcctccat attggaactt gcaactgcag
3901 gaattgggat gtctgataaa cttgttctaa aaaatgctct aatttcattt
3951 agacatacaa aacagctaaa agacaagtat attttgggaa tatacaaatt
4001 cctcatgtta ttagctcaag aaacatttca acatgagcga ttaggggagt
4051 tctctttctt gggtaaagtc caatggaaag tattcatacc aaagaatgaa
4101 tttgagttct ctaatctttt tagtattaat tatttaagtc aatggtctgc
4151 agaacatcct gtatatgatt atataattcc acaattaaga gatgacttgc
4201 tagtttatct tgtcaggaag ttaaatgatc caagcattgt tacagctatg
4251 acattacaat cacctctgca gcttagattc cgtatgcagg caaaacaaca
4301 cctccctgtg tgcaaatata atgacaattg ggttactttt agaacagttc
4351 ttgctgctgc tcatgagtat gcattaaaat atgtcccaaa tgaaattgat
4401 ctggacctct tcaatacttt agtgtcatgt acattttcaa aagaatttgc
4451 atggaaagac tttatcagca acactgagtg tgaagttatc atgtcaagga
4501 aaattcatag agcaaaggtt gcaagggtat ttactgtcaa ggaacgagat
4551 caaattatcc aaaatccaat ttctgtggta attgcttata agtttgctgt
4601 tggcacaaat gagataaagg acgttttgga taaggctaaa ttccctgatt
4651 ctttaagtag tgatttgaag ttattgtatg aaggtgttta tagggaactg
4701 gggctggaca taaatgatcc atctgtaatg aaacgagtag cacctatgtt
4751 gtacaagact agtcgatcta ggattgtaat agtgaatggc aatgtcgaag
4801 gaacagcaga gagtatctgc acctactggt taagatcaat ctcttatgtt
4851 aagcaaataa agattatccc gcatgcagaa gtccttaaag ctgtctcaat
4901 ttttagtaaa ggggagttta tacaggaaga taaacagcta gctgctctaa
4951 ggctgtgtat agaaatatgg aggtggggta aatataacag agttgatatc
5001 aatgattggt ttgctgcctt atggtttgaa ggtaagactc tctgggactg
5051 gttgtattat ttccagcgga aaggtgtgcc tcttgtagat cctgaaatac
5101 aatgtgctgg gctaatgatg tatgatctat taagagatat gacatgtttg
5151 cagatgcatg caaataggag agcatattct gggaagcaat atgatgcata
5201 ttgcatgcaa acatataatg aggaaacaaa actttatgaa ggtgatttaa
5251 gagttgtgtt taattttgga atagattgtg caagacttga aatcttttgg
5301 gaaaaacaga cttatatcct tgaaacatct atcactagta aaccggttct
5351 tcgagtttta atgcaagaag tgtctactga attgcaacgg tgtggtttaa
5401 aatttgatac aatacagagt ataggattca aatcagttgt tttgtttaag
5451 acagattcag gatttgaatg ggggaaacca aatgtacctt gcattatttt
5501 taagaattgt gctttacgcc cgaaccttag aaataagcaa gtattaaaca
5551 aggaatttat tattactatt cttgataatg gttttaaggc aattgcccag
5601 caagacttag atagtaatcg gttccagttg gcacatgcat accataactt
5651 gcgtgatata aggtatcagg cacttgaaac agtaaataca gtaaacttta
5701 ctgttgatgg gaaaatttta tatctaaatc caatcattgc tgcaggtcta
5751 atcgagaact tcatgaaggg cctacctgca gtcatccccc cacaggcata
5801 tagccttatt atgaaaaaag caaaaattac tgtagaccta ttcatgttta
5851 ataagctttt gggccttata aaccctgaaa atacatttaa tatggatggt
5901 attgaaagtg atgatccaga atatagtact gtaactacac tttctgtcaa
5951 ggattgggca gaggaaaaag atattgaaga tgcggaggtg gaagatgatg
6001 agtatgtcat tgatttaaat gatattgatt ttgataaggt tgacactctt
6051 gctgacatcc agcatttttt gcaggatgaa tcagcataca ctgcggacct
6101 tgtaattgat actgaggcga ctgaatcaaa gcgagtgcgt ggtattgtaa
6151 aattgctaga acctattaag ttaattaaga gttgggtttc gaagggtcta
6201 gcaatagaaa agatatatga tcctttggct gttatactcg ttactcggta
6251 tttttctaag caatactcct tttcaaaagt accattagct cagcttgacc
6301 cgtataattt aaccgaactt gagagcattg ttagaggatg gggagaatta
6351 gtttgtgatc agttttatga gttagaccag caagctcatg cctttataca
6401 aagaacaaat aaagcgccgg aagacctcac acctgattca cttttttcat
6451 ttagacatgc tgagctatta ttctcaagac tcttcttgcc tgatactgtt
6501 tctgtttttt attaaagtta ttctctaatt tcttcatctt ctttattttc
6551 tagttgtgta tcccggagca tactactact a