Sequence of DPV Thottapalayam virus
Thottapalayam virus strain VRC 66412 segment M, complete sequence.
ACC No: DQ825771
Dated: 2007-08-28 | Length: 3621 | CRC: -1320181143
ID DQ825771; SV 1; linear; viral cRNA; STD; VRL; 3621 BP.
XX
AC DQ825771;
XX
DT 24-JUN-2007 (Rel. 92, Created)
DT 28-AUG-2007 (Rel. 93, Last updated, Version 3)
XX
DE Thottapalayam virus strain VRC 66412 segment M, complete sequence.
XX
KW .
XX
OS Thottapalayam virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus.
XX
RN [1]
RP 1-3621
RX PUBMED; 17711577.
RA Yadav P.D., Vincent M.J., Nichol S.T.;
RT "Thottapalayam virus is genetically distant to the rodent-borne
RT hantaviruses, consistent with its isolation from the Asian house shrew
RT (Suncus murinus)";
RL (er) Virol. J. 4 (1), 80 (2007)
XX
RN [2]
RP 1-3621
RA Yadav P.D., Vincent M.J., Nichol S.T.;
RT ;
RL Submitted (27-JUN-2006) to the EMBL/GenBank/DDBJ databases.
RL Special Pathogens Branch, Centers for Disease Control and Prevention, 1600
RL Clifton Road, Atlanta, GA 30333, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .3621
FT /organism="Thottapalayam virus"
FT /segment="M"
FT /strain="VRC 66412"
FT /mol_type="viral cRNA"
FT /country="India:Vellore, Tamil Nadu"
FT /isolation_source="Suncus murinus"
FT /collection_date="1964"
FT /db_xref="taxon:262967"
FT primer_bind 1. .17
FT CDS 40. .3405
FT /codon_start=1
FT /product="envelope glycoprotein precursor"
FT /note="contains G1 and G2 glycoproteins"
FT /db_xref="GOA:A6MD75"
FT /db_xref="UniProtKB/TrEMBL:A6MD75"
FT /protein_id="ABH09887.1"
FT /translation="MISIAKLAVCVSLLLCISATEHKPILLNCPHYGVIGAEYVWGTTR
FT IGHFPLDEVKNMVFETTCSFGLPAHDPMTQMKVITWKEKETHGTSGEYFDKVASHTETE
FT GDFKSLCTKTHYLTYPFKNGNSYCLNVHCNQTLCDVEVIVIIRAVHCLTQDMCVLYRSN
FT IKIPIIFKKTHCIKSMLNEGKCFQPDFTIPYSPKIHTRMNLPVLCMLMPTDGQPEGTKE
FT IVGQTSCTDIKLASWYSCLVGDYSMIFVHSDIKMRQIKLNLKFRTNPQGDDHSDRRSSR
FT IHIIGHKNITTISNKQNTLTAFRGATDYTSLLYNVQSTDKKPTLFLGYTPTMSWTTCGT
FT SYVPAVWRGHVDTWGSVIETDDCTIFCTLAGPGASCEAFSSSGIFSLNSTTCLIPHTHR
FT FKGLGDQVTFMCQRVDFDLEFYCNGRHKVIRTKTLVIGQCIHTFTSFFSLFPSIAHSLA
FT VEICVPGFHGFTAVCLITTFCFGWLWIPGATWMVLQILKIIVLFITNSTMDQRFKRILT
FT KIKAEYRSTIGDTSCDYCKHECATNLEADNHIMYCKQGKCPYCLNEVYHSPAALQEHFK
FT MCPLTDRFNKTIKDQILKTSTKPHSSLYKKLCVFRYTNRCYIFTVWVTLLFFQLVIWAA
FT SAEVMNLEPEWNDNVHGVGVHKMTTDVELDFSIPSSSKFTYKRFLESPVGETKMQFALK
FT ISQQKTIASIQKLGHWVDARWNTRTVFHCYGACSKFEYPWKSATCSKEHDFEYQTAWAC
FT NPGDCPGINTGCTACGLYLDKPKSIATVIKLIQIDYEREVCVQLGNYNECKRVTGNDCL
FT STNGVKVCLLSTTVKLGSTDTLVFFGPLQGGAVVFKNWCTSSCVYGDPGDVMLTENGEY
FT NCPDFNGNFERICRFAQTPVCEYGGNTVSGYQRYLATKDSFFSINMTDPILERSKLEWY
FT DPDATSRDHINVQITKDLDFENLGENPCRVTLKVLSIDGAWGSETGFSLNCKVSLLECN
FT SFITVIKACDKAMCYGASSQTLQRGDNTVTIQGRGGHSGSKFKCCHEEDCAEEGLLAEA
FT PHLARVKSVDVDTSEIYSDGSGECRITCWLSKTSEWFMGILSGNWLVIVVLVVIMILSI
FT MLLSFFCPSKKHQA"
FT primer_bind complement(3602. .3621)
XX
SQ Sequence 3621 BP; 1194 A; 629 C; 739 G; 1059 T; 0 other;
dq825771 Length: 3621 28-AUG-2007 Type: N Check: 9982 ..
1 tagtagtaga ctccgcaatt acaagcagtt aacaataaaa tgatttctat
51 agctaagtta gctgtgtgtg tgagtctact actatgtata agtgcaactg
101 agcacaagcc cattttgctc aattgtccac attatggtgt tattggggct
151 gagtatgtct gggggactac aagaattgga cacttcccac tagatgaggt
201 taaaaacatg gtatttgaga caacatgctc ttttggtcta cctgcacatg
251 accctatgac acaaatgaag gtgataactt ggaaagagaa ggaaactcat
301 ggtacttcag gggagtattt tgataaagtt gcaagtcaca cagaaacaga
351 gggtgacttt aaaagtttat gcacaaaaac tcattatttg acatatccct
401 tcaaaaatgg aaattcatac tgtttgaatg tccattgtaa tcaaacacta
451 tgtgatgttg aagtcatagt tattataaga gctgtccact gcctaacaca
501 agacatgtgt gtactttaca gaagcaatat taaaatacca attatattta
551 agaagactca ctgtatcaaa tcgatgctga atgaaggaaa atgttttcaa
601 ccagatttca caatacccta tagcccaaaa atacacacta ggatgaactt
651 gcctgtccta tgtatgctta tgccaacaga tggccagcca gaggggacaa
701 aggagattgt tggacagaca tcatgcacag atataaagct ggcaagttgg
751 tactcatgcc tggtaggcga ttattcaatg atctttgtac atagcgatat
801 aaagatgagg caaataaaac ttaacctaaa atttaggact aaccctcaag
851 gcgatgatca tagtgatcgt agatcatcta gaattcatat tattgggcat
901 aagaacataa ccacaataag caataaacaa aacacactaa cagccttcag
951 aggtgcaaca gattatacat cattattgta taatgtgcaa tctacagaca
1001 aaaaacctac actgtttcta ggctacacac caactatgag ctggacaaca
1051 tgtggcacaa gttatgtccc tgcagtttgg agaggccatg tggacacctg
1101 gggaagtgtt atagaaacag atgactgtac catattttgt actcttgcag
1151 gtccgggtgc aagctgtgag gcattttcta gttcagggat cttttcacta
1201 aattcaacaa catgtcttat tccacatact cataggttta aaggtttagg
1251 agaccaggtt acttttatgt gtcagcgggt agactttgat ttagagtttt
1301 actgtaatgg taggcataaa gtcataagaa caaagactct tgtgataggt
1351 caatgtatac acacattcac tagcttcttt tcactgttcc caagtattgc
1401 acactcacta gctgttgaaa tatgtgttcc aggcttccat ggattcacag
1451 cagtttgtct cattacaaca ttttgttttg gctggttgtg gatccccgga
1501 gcaacatgga tggtattaca gatactgaaa attatagtcc tttttataac
1551 aaatagtact atggatcaga gatttaaacg tattttgaca aaaataaagg
1601 cagagtatag gtctactatt ggtgatacaa gttgtgatta ctgcaagcat
1651 gaatgtgcaa caaatttgga ggcagacaac catattatgt actgcaaaca
1701 aggcaaatgc ccttactgtt taaatgaagt ctaccactca cctgctgctt
1751 tacaagaaca ttttaaaatg tgtcctctca ccgatagatt caataaaaca
1801 ataaaagatc aaatccttaa gacaagcacg aagccacata gtagcttgta
1851 taaaaaatta tgtgtgttca gatataccaa tagatgctac atctttacag
1901 tatgggttac acttttattt tttcagcttg ttatctgggc tgcaagtgca
1951 gaagtgatga acttggagcc agaatggaat gataatgtcc acggagttgg
2001 tgtgcataaa atgacaacag atgttgaact agatttttcc ataccttctt
2051 cctcaaaatt tacatataag cgattcttgg aaagccctgt aggtgagact
2101 aagatgcaat ttgccttaaa aatatctcaa cagaaaacaa tagcatcaat
2151 tcaaaagcta ggtcattggg ttgacgcacg ctggaatact aggacagtgt
2201 tccattgcta tggggcctgc tctaaatttg aatatccgtg gaagagtgca
2251 acatgttcga aagaacatga ttttgaatac caaacagcct gggcgtgtaa
2301 cccaggagat tgccctggga ttaacacagg atgcacagct tgtggccttt
2351 atctggataa accaaaatct atagctactg ttataaagct cattcaaata
2401 gactatgaga gggaagtttg tgttcagcta ggtaactata atgagtgtaa
2451 acgagttact ggaaatgact gcttaagcac aaatggagtt aaagtctgtc
2501 ttctaagcac cactgtcaaa cttgggtcaa cagacacatt agttttcttt
2551 gggccacttc aaggaggtgc agttgttttc aaaaattggt gcacgagtag
2601 ctgtgtctac ggggaccctg gagatgtcat gctaacagaa aatggggaat
2651 acaactgccc tgattttaat ggaaactttg agagaatttg tagatttgca
2701 cagactcctg tttgtgagta tgggggtaac acagtttcag gctatcaacg
2751 atatcttgct actaaggatt cttttttctc aatcaatatg actgacccaa
2801 ttctagagag gagcaagctt gaatggtatg accctgatgc aacatcccgt
2851 gatcacatta atgttcaaat aacaaaggac ctagatttcg aaaacttggg
2901 tgaaaatccc tgtagagtaa ctcttaaagt cctgagcatt gacggggcat
2951 ggggttcaga gacaggattt tcactaaatt gtaaagtctc attgcttgaa
3001 tgtaatagct ttattactgt tataaaggca tgtgataaag ccatgtgtta
3051 tggtgcaagc tcacagaccc ttcagcgtgg tgataataca gtaacaatcc
3101 aagggagagg tggacatagt gggtctaagt ttaaatgttg ccatgaagaa
3151 gactgtgctg aggaaggctt acttgctgag gctccacatc tagcaagagt
3201 aaaatctgtt gatgttgata caagtgagat ttactcagat ggttctggag
3251 aatgtcggat cacatgctgg ttatctaaaa ctagtgaatg gttcatgggg
3301 attttatcag gtaattggtt ggtcattgta gtattagtgg taataatgat
3351 actcagtatt atgctgttaa gctttttttg cccaagtaag aaacatcagg
3401 cttaatatag tgtattctct tatggctatc taatgttatg gcttttcact
3451 aacactacta agctgcatat atactaaact aataagaaat cataaaaaaa
3501 taagtaaaaa aataaaaaaa taaaaaataa aaaaataaaa aaataaaaaa
3551 acaaaaacaa ttttgggtaa taacccactt ctgtgattct ttgtcttttg
3601 ttcttgcgga gtctactact a