Sequence of DPV Gull circovirus
Gull circovirus, complete genome.
ACC No: DQ845074
Dated: 2006-10-02 | Length: 2035 | CRC: -799810247
ID DQ845074; SV 1; circular; genomic DNA; STD; VRL; 2035 BP. XX AC DQ845074; XX DT 02-OCT-2006 (Rel. 89, Created) DT 02-OCT-2006 (Rel. 89, Last updated, Version 1) XX DE Gull circovirus, complete genome. XX KW . XX OS Gull circovirus OC Viruses; ssDNA viruses; Circoviridae; Circovirus; unclassified Circovirus. XX RN [1] RP 1-2035 RA Todd D., Scott A.N.J., Fringuelli E., Shivraprasad H.L., Gavier-Widen D., RA Smyth J.A.; RT "Molecular characterization of novel circoviruses from finch and gull"; RL Unpublished. XX RN [2] RP 1-2035 RA Todd D., Scott A.N.J., Fringuelli E.; RT ; RL Submitted (11-JUL-2006) to the EMBL/GenBank/DDBJ databases. RL Department of Agriculture and Rural Development for Northern Ireland, RL Veterinary Sciences Division, Stoney Road, Stormont, Belfast BT4 3SD, UK XX FH Key Location/Qualifiers FH FT source 1. .2035 FT /organism="Gull circovirus" FT /specific_host="gull" FT /mol_type="genomic DNA" FT /db_xref="taxon:400121" FT gene 100. .1017 FT /gene="rep" FT CDS 100. .1017 FT /codon_start=1 FT /gene="rep" FT /product="replication-associated protein" FT /protein_id="ABI54254.1" FT /translation="MRRRPRSGRYLRSIMAARRDSGARRWCFTLNNYTPEEEETARNLI FT HDADKYAFAIIGKEVGESGTPHLQGFMHFKQKQRLTALKKLFPRAHFEKARGSDQQNAD FT YCGKDGEILTMIGTPSDNNPSDLAGAVAAVKRGSQMSEIAREFSEVYVKYGRGLRDLRL FT LIGCPPRDFKTEVIVLIGPPGCGKSKLANEMEGSKFYKMKGDWWDGYDNQDIVIIDDFY FT GWLPYCECLRLCDRYPHRVPVKGAYVEFTSKKIVFTSNRHVDGWWKGEIEKSAFYRRIN FT VYKFYETGEFKDMPGHMLPHPINY" FT CDS complement(790. .1209) FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF C2" FT /protein_id="ABI54256.1" FT /translation="MLLDLFNKDSILNSKQVVSSLRATRVGRRQSRAPLALRSLRELRD FT SGARDENDCHPEGGVFISRLIIDWVREHVSGHVLEFTSLIKLVHIDPSVEGTLLNFTFP FT PPIHMAIAGKHNLLAGEFHVGTFHRHTVRVPVTQT" FT gene complement(1190. .1927) FT /gene="cap" FT CDS complement(1190. .1927) FT /codon_start=1 FT /transl_except=(pos:1925. .1927,aa:Met) FT /gene="cap" FT /product="capsid protein" FT /protein_id="ABI54255.1" FT /translation="MRRRHRLPRNRRGHRLNRIYLFRFRRQFTVDFPSKTDPQKWASDF FT FTFNLNDFIGQEGIPAAWPFEDYRINLAKVVLRPEGVTTTIARGWGYTVPVQDARVKDL FT KLQDQTQDPLANWDGARAWNLVRGFKRLVRPKPQLTISDMTASNFSASMWLNSSRSGWL FT PLQMPAGTQRDGTRVVHYGLAFSWPSPGQALRYIAEITIYVTFRQFAQIMLKKSEEDLS FT KFGDCLTITDNEKDIDWNVVGSL" XX SQ Sequence 2035 BP; 478 A; 506 C; 532 G; 519 T; 0 other; dq845074 Length: 2035 02-OCT-2006 Type: N Check: 9408 .. 1 accggcgggc cggggccatg gggccatctg gcccctggcc aagcatgcgc 51 agtagtggcg catgcgcaat ggccgcgcag cggcctttat ttgcggagca 101 tgcgcagaag gccgcgcagc ggccgctatt tgcgaagcat catggcagca 151 cggcgagaca gcggagcccg tcgctggtgc tttactctga ataactacac 201 tcccgaggaa gaggagaccg ctcgcaatct gattcatgat gcagataagt 251 acgcgtttgc gataatcggc aaagaagttg gcgaaagcgg tactcctcat 301 ctgcaaggct tcatgcattt taagcaaaag cagcggctta ccgctctaaa 351 gaaacttttt cctcgcgcgc attttgagaa agctcgcggc agtgatcagc 401 agaatgctga ttattgtggt aaagacggcg aaatacttac catgatcggt 451 actccgagtg ataataatcc gagtgatctt gcgggagctg ttgccgctgt 501 gaaacgcgga agtcaaatga gtgaaatcgc gcgagagttc agtgaagtct 551 acgtcaagta tgggcggggc ctccgtgatc tccggttgct gattggttgc 601 ccgccccgcg atttcaaaac agaagtcatc gttctgattg gcccacctgg 651 ctgtggcaag tcaaaattgg ccaatgagat ggaagggtct aagttctaca 701 agatgaaagg tgattggtgg gatggttatg acaatcaaga tattgtcata 751 atcgatgact tctacggttg gctgccgtac tgtgagtgcc tacgtctgtg 801 tgaccggtac cctcaccgtg tgcctgtgaa aggtgcctac gtggaattca 851 ccagcaagaa gattgtgttt accagcaatc gccatgtgga tgggtggtgg 901 aaaggtgaaa ttgagaagag tgccttctac cgacggatca atgtgtacaa 951 gttttatgag actggtgaat tcaaggacat gcccggacac atgctcccgc 1001 acccaatcaa ttattaggcg cgagatgaaa acacccccct cgggatgaca 1051 gtcgttttca tctcgcgccc ccgagtcgcg gagttcgcga agcgaacgga 1101 gcgcgagtgg cgcgcgagat tgtcgacgac cgacgcgcgt agcgcggagg 1151 gaggagacca cttgctttga atttaatatg ctatctttat taaagagatc 1201 caacaacatt ccagtctatg tctttttcat tgtcagtaat tgttaagcag 1251 tccccgaact ttgacaggtc ttcttcagat ttcttcaaca ttatctgagc 1301 gaactgcctg aatgttacat atatagttat ttctgcaata tatctcagtg 1351 cctgtccagg tgaaggccaa gagaatgcca gcccgtagtg cactactctt 1401 gtaccgtccc tctgggtccc tgctggcatt tgtaaaggta accagcctga 1451 tctactgcta ttcagccaca ttgatgctga aaagttagag gctgtcatat 1501 ctgatatggt tagttgaggc tttgggcgta ccagcctctt aaaccctctg 1551 accaagttcc acgccctcgc cccgtcccag ttagccagtg ggtcttgcgt 1601 ttgatcctgt aattttaaat ctttaactct ggcgtcctga actgggactg 1651 tgtaccccca gccccttgca attgttgttg tgacaccttc aggcctcagc 1701 accactttag ctaaatttat cctgtaatcc tcgaacggcc atgctgccgg 1751 tattccctct tgacctataa agtcattcag gttgaaggtg aagaaatctg 1801 aggcccactt ttgtgggtca gtcttggatg ggaagtccac tgtgaattgc 1851 cgtctaaatc tgaacaagta tattctgttc agtctgtgcc ctcttcggtt 1901 cctgggcaac ctgtgacgtc tgcgcactcg tctgtgaaac cgccttctcc 1951 ggaaaccgcg agtaacacgc ctccttctgg ttgctgagcg acgtacctaa 2001 aaatagaatg gccccacggc ccgccgtata gtatt