Sequence of DPV Finch circovirus
Finch circovirus, complete genome.
ACC No: DQ845075
Dated: 2006-10-02 | Length: 1962 | CRC: -1870463298
ID DQ845075; SV 1; circular; genomic DNA; STD; VRL; 1962 BP. XX AC DQ845075; XX DT 02-OCT-2006 (Rel. 89, Created) DT 02-OCT-2006 (Rel. 89, Last updated, Version 1) XX DE Finch circovirus, complete genome. XX KW . XX OS Finch circovirus OC Viruses; ssDNA viruses; Circoviridae; Circovirus; unclassified Circovirus. XX RN [1] RP 1-1962 RA Todd D., Scott A.N.J., Fringuelli E., Shivraprasad H.L., Gavier-Widen D.; RT "Molecular characterization of novel circoviruses from finch and gull"; RL Unpublished. XX RN [2] RP 1-1962 RA Todd D., Scott A.N.J., Fringuelli E.; RT ; RL Submitted (11-JUL-2006) to the EMBL/GenBank/DDBJ databases. RL Department of Agriculture and Rural Development for Northern Ireland, RL Veterinary Sciences Division, Stoney Road, Stormont, Belfast BT4 3SD, UK XX FH Key Location/Qualifiers FH FT source 1. .1962 FT /organism="Finch circovirus" FT /specific_host="finch" FT /mol_type="genomic DNA" FT /db_xref="taxon:400122" FT gene 29. .904 FT /gene="rep" FT CDS 29. .904 FT /codon_start=1 FT /gene="rep" FT /product="replication-associated protein" FT /protein_id="ABI54257.1" FT /translation="MPKQARESPCKRWCFTLNNPTEEEIERVKNLSPSEYHYAIVGKEK FT GEQGTPHLQGFLHLKKKQRLKQMKELIPRAHFERARGSDEDNEQYCGKEGDVILTIGVP FT SKGNRSDLAGAVAAVKAGRGMAEVAREFSLAYVRYGRGLRDLALLIGQKPRDFKTEVIV FT LTGPSGCGKSRWANEQEGTKFYKMKGDWWDGYSNEDMVIIDDFYGWIPFCELLRLCDRY FT PHKVPVKGSYVEFTSKKIIITSNTHPDHWYNEEKCYLQALFRRINRWLVWDGLRFEDAP FT ECMKKYPINY" FT CDS complement(614. .1063) FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF C2" FT /protein_id="ABI54259.1" FT /translation="MAQGQCARSAFGRPSILRRQLWGCKAWPTLGGSRAATRQGTALRA FT VNTREVKSSIVDGVLLHALRSIFKSQTVPNKPSVDPPKQGLQVAFLFIVPVIWVGVACN FT YYFLRRELHIAALNGHLVWVTVTEAEQFTERDPPIKVIYDDHVFV" FT gene complement(1212. .1961) FT /gene="cap" FT CDS complement(1212. .1961) FT /codon_start=1 FT /transl_except=(pos:1959. .1961,aa:Met) FT /gene="cap" FT /product="capsid protein" FT /protein_id="ABI54258.1" FT /translation="MLTATWNHFLIQRRMRHWRRRRHLRMRRRHWRRRRRIPANRRGHR FT TNRIYRIKLVRQYQQILGKAENAGAFRFGTDGVTIILKDFFPEGKELPFEDYRIRLAKV FT EGIPRREDWTHWEGAGVTVPIQDQHLRDFFKKTRLTVDPLANWDGARKWTLRKGFKRLF FT RPRPQLSVTDTDTANTTAALWLNNPRGAWIPLMKKGETTASTTSGTRVNHYGLAFSFPE FT PWPADFEMQIKATIYVEFRQLNMTHMN" XX SQ Sequence 1962 BP; 446 A; 509 C; 559 G; 448 T; 0 other; dq845075 Length: 1962 02-OCT-2006 Type: N Check: 8258 .. 1 accggccact tggaaccctg gaaccaccat gccgaaacaa gcgcgcgaga 51 gcccttgcaa gcggtggtgc tttaccctca acaacccgac tgaggaggag 101 atagagagag tgaaaaatct gtctccgagt gagtatcact atgcgatagt 151 cgggaaagaa aagggagaac aaggcacccc gcatttgcaa gggttcctgc 201 atctgaaaaa gaagcagcgg ttgaagcaaa tgaaagagct gattccccgc 251 gcgcatttcg agagagcccg tggttccgat gaggacaatg agcagtattg 301 cggcaaggag ggggacgtta tactcaccat tggggttcct tcaaagggta 351 accggagtga ccttgccgga gctgttgccg ccgtgaaagc cggaagaggt 401 atggccgaag tcgcgcgaga gttcagtcta gcctacgtca gatatgggcg 451 gggcctgcgt gatcttgcgc tgctgattgg ccagaagccc cgtgacttca 501 aaacggaagt catagtgctg accggcccta gtgggtgtgg caaatcccgc 551 tgggccaatg aacaagaagg aactaagttt tataaaatga aaggtgattg 601 gtgggacggg tattcaaacg aagacatggt catcatagat gacttttatg 651 ggtggatccc gttctgtgaa ctgctccgcc tctgtgaccg ttacccacac 701 aaggtgcccg ttaagggcag ctatgtggag ttcacgtcta agaaaataat 751 aattacaagc aacacccacc cagatcactg gtacaatgaa gagaaatgct 801 acctgcaagc cctgtttcgg aggatcaaca gatggcttgt ttgggacggt 851 ctgagatttg aagatgctcc ggagtgcatg aagaagtacc ccatcaacta 901 ttgaggactt cacctcccgc gtgttcaccg cgcgaagcgc ggtgccctgc 951 cgcgtagcgg cccgtgaccc ccccagagtt ggccatgcct tgcaccccca 1001 aagttgcctc cttaggatcg aaggtcggcc gaaggccgac cgagcacact 1051 gaccttgggc catgccttgc acccccaaag ttgcctcctt aggatcgaag 1101 gtcggccgaa ggccgaccga gcacacttat tctcgaggga aagagcggtt 1151 ttctgactta gggttaggga aaggaatacg gctatgcgga tcgttcgtac 1201 aataaaacac tttaattcat gtgtgtcatg ttcaattgtc tgaattcaac 1251 ataaatagtg gctttgatct gcatctcaaa gtcagccggc catggttctg 1301 ggaagctgaa tgccaggccg tagtggttca ctctggtccc cgatgtggtg 1351 gaggcagtgg tttctccttt cttcatgagg ggtatccatg cccctctggg 1401 gttgttcagc cacagcgcgg ctgttgtgtt agccgtgtca gtgtccgtaa 1451 cggacagctg tggtcggggg cgaaacagcc gcttaaaacc ttttctcagg 1501 gtccactttc tggcaccatc ccagtttgca agggggtcga ccgtcagccg 1551 ggtcttctta aagaagtctc gaaggtgctg atcctgtatt gggacagtta 1601 cccccgcccc ttcccagtgc gtccaatctt cccggcgggg tatgccttct 1651 actttggcca gacggattct atagtcctca aagggtagct ccttcccttc 1701 tgggaaaaag tctttgagga ttatagttac cccgtcagtg ccgaacctga 1751 aggccccggc attttcagcc ttgccgagta tctgctggta ctgtctgacc 1801 agctttatcc ggtagatcct gttggtgcgg tggccacgcc tgttggcagg 1851 gatccgcctc ctgcggcgcc agtgccgcct gcgcatgcgc agatggcgtc 1901 tccgcctcca gtgacgcatc cgcctctgaa tgaggaagtg gttccaagtg 1951 gccgttagta tt