Sequence of DPV Finch circovirus

Finch circovirus, complete genome.

ACC No: DQ845075

Dated: 2006-10-02 | Length: 1962 | CRC: -1870463298

                
ID   DQ845075; SV 1; circular; genomic DNA; STD; VRL; 1962 BP.
XX
AC   DQ845075;
XX
DT   02-OCT-2006 (Rel. 89, Created)
DT   02-OCT-2006 (Rel. 89, Last updated, Version 1)
XX
DE   Finch circovirus, complete genome.
XX
KW   .
XX
OS   Finch circovirus
OC   Viruses; ssDNA viruses; Circoviridae; Circovirus; unclassified Circovirus.
XX
RN   [1]
RP   1-1962
RA   Todd D., Scott A.N.J., Fringuelli E., Shivraprasad H.L., Gavier-Widen D.;
RT   "Molecular characterization of novel circoviruses from finch and gull";
RL   Unpublished.
XX
RN   [2]
RP   1-1962
RA   Todd D., Scott A.N.J., Fringuelli E.;
RT   ;
RL   Submitted (11-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   Department of Agriculture and Rural Development for Northern Ireland,
RL   Veterinary Sciences Division, Stoney Road, Stormont, Belfast BT4 3SD, UK
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1962
FT                   /organism="Finch circovirus"
FT                   /specific_host="finch"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:400122"
FT   gene            29. .904
FT                   /gene="rep"
FT   CDS             29. .904
FT                   /codon_start=1
FT                   /gene="rep"
FT                   /product="replication-associated protein"
FT                   /protein_id="ABI54257.1"
FT                   /translation="MPKQARESPCKRWCFTLNNPTEEEIERVKNLSPSEYHYAIVGKEK
FT                   GEQGTPHLQGFLHLKKKQRLKQMKELIPRAHFERARGSDEDNEQYCGKEGDVILTIGVP
FT                   SKGNRSDLAGAVAAVKAGRGMAEVAREFSLAYVRYGRGLRDLALLIGQKPRDFKTEVIV
FT                   LTGPSGCGKSRWANEQEGTKFYKMKGDWWDGYSNEDMVIIDDFYGWIPFCELLRLCDRY
FT                   PHKVPVKGSYVEFTSKKIIITSNTHPDHWYNEEKCYLQALFRRINRWLVWDGLRFEDAP
FT                   ECMKKYPINY"
FT   CDS             complement(614. .1063)
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /note="ORF C2"
FT                   /protein_id="ABI54259.1"
FT                   /translation="MAQGQCARSAFGRPSILRRQLWGCKAWPTLGGSRAATRQGTALRA
FT                   VNTREVKSSIVDGVLLHALRSIFKSQTVPNKPSVDPPKQGLQVAFLFIVPVIWVGVACN
FT                   YYFLRRELHIAALNGHLVWVTVTEAEQFTERDPPIKVIYDDHVFV"
FT   gene            complement(1212. .1961)
FT                   /gene="cap"
FT   CDS             complement(1212. .1961)
FT                   /codon_start=1
FT                   /transl_except=(pos:1959. .1961,aa:Met)
FT                   /gene="cap"
FT                   /product="capsid protein"
FT                   /protein_id="ABI54258.1"
FT                   /translation="MLTATWNHFLIQRRMRHWRRRRHLRMRRRHWRRRRRIPANRRGHR
FT                   TNRIYRIKLVRQYQQILGKAENAGAFRFGTDGVTIILKDFFPEGKELPFEDYRIRLAKV
FT                   EGIPRREDWTHWEGAGVTVPIQDQHLRDFFKKTRLTVDPLANWDGARKWTLRKGFKRLF
FT                   RPRPQLSVTDTDTANTTAALWLNNPRGAWIPLMKKGETTASTTSGTRVNHYGLAFSFPE
FT                   PWPADFEMQIKATIYVEFRQLNMTHMN"
XX
SQ   Sequence 1962 BP; 446 A; 509 C; 559 G; 448 T; 0 other;

dq845075 Length: 1962  02-OCT-2006  Type: N  Check: 8258  ..

       1  accggccact tggaaccctg gaaccaccat gccgaaacaa gcgcgcgaga
      51  gcccttgcaa gcggtggtgc tttaccctca acaacccgac tgaggaggag
     101  atagagagag tgaaaaatct gtctccgagt gagtatcact atgcgatagt
     151  cgggaaagaa aagggagaac aaggcacccc gcatttgcaa gggttcctgc
     201  atctgaaaaa gaagcagcgg ttgaagcaaa tgaaagagct gattccccgc
     251  gcgcatttcg agagagcccg tggttccgat gaggacaatg agcagtattg
     301  cggcaaggag ggggacgtta tactcaccat tggggttcct tcaaagggta
     351  accggagtga ccttgccgga gctgttgccg ccgtgaaagc cggaagaggt
     401  atggccgaag tcgcgcgaga gttcagtcta gcctacgtca gatatgggcg
     451  gggcctgcgt gatcttgcgc tgctgattgg ccagaagccc cgtgacttca
     501  aaacggaagt catagtgctg accggcccta gtgggtgtgg caaatcccgc
     551  tgggccaatg aacaagaagg aactaagttt tataaaatga aaggtgattg
     601  gtgggacggg tattcaaacg aagacatggt catcatagat gacttttatg
     651  ggtggatccc gttctgtgaa ctgctccgcc tctgtgaccg ttacccacac
     701  aaggtgcccg ttaagggcag ctatgtggag ttcacgtcta agaaaataat
     751  aattacaagc aacacccacc cagatcactg gtacaatgaa gagaaatgct
     801  acctgcaagc cctgtttcgg aggatcaaca gatggcttgt ttgggacggt
     851  ctgagatttg aagatgctcc ggagtgcatg aagaagtacc ccatcaacta
     901  ttgaggactt cacctcccgc gtgttcaccg cgcgaagcgc ggtgccctgc
     951  cgcgtagcgg cccgtgaccc ccccagagtt ggccatgcct tgcaccccca
    1001  aagttgcctc cttaggatcg aaggtcggcc gaaggccgac cgagcacact
    1051  gaccttgggc catgccttgc acccccaaag ttgcctcctt aggatcgaag
    1101  gtcggccgaa ggccgaccga gcacacttat tctcgaggga aagagcggtt
    1151  ttctgactta gggttaggga aaggaatacg gctatgcgga tcgttcgtac
    1201  aataaaacac tttaattcat gtgtgtcatg ttcaattgtc tgaattcaac
    1251  ataaatagtg gctttgatct gcatctcaaa gtcagccggc catggttctg
    1301  ggaagctgaa tgccaggccg tagtggttca ctctggtccc cgatgtggtg
    1351  gaggcagtgg tttctccttt cttcatgagg ggtatccatg cccctctggg
    1401  gttgttcagc cacagcgcgg ctgttgtgtt agccgtgtca gtgtccgtaa
    1451  cggacagctg tggtcggggg cgaaacagcc gcttaaaacc ttttctcagg
    1501  gtccactttc tggcaccatc ccagtttgca agggggtcga ccgtcagccg
    1551  ggtcttctta aagaagtctc gaaggtgctg atcctgtatt gggacagtta
    1601  cccccgcccc ttcccagtgc gtccaatctt cccggcgggg tatgccttct
    1651  actttggcca gacggattct atagtcctca aagggtagct ccttcccttc
    1701  tgggaaaaag tctttgagga ttatagttac cccgtcagtg ccgaacctga
    1751  aggccccggc attttcagcc ttgccgagta tctgctggta ctgtctgacc
    1801  agctttatcc ggtagatcct gttggtgcgg tggccacgcc tgttggcagg
    1851  gatccgcctc ctgcggcgcc agtgccgcct gcgcatgcgc agatggcgtc
    1901  tccgcctcca gtgacgcatc cgcctctgaa tgaggaagtg gttccaagtg
    1951  gccgttagta tt