Sequence of DPV Chilli veinal mottle virus

Chilli veinal mottle virus isolate CM1 polyprotein gene, partial cds.

ACC No: DQ854953

Dated: 2008-05-20 | Length: 1251 | CRC: -1197736582

                
ID   DQ854953; SV 1; linear; genomic RNA; STD; VRL; 1251 BP.
XX
AC   DQ854953;
XX
DT   17-AUG-2006 (Rel. 88, Created)
DT   20-MAY-2008 (Rel. 95, Last updated, Version 3)
XX
DE   Chilli veinal mottle virus isolate CM1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Chilli veinal mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1251
RA   Tsai W.S., Huang Y.C., Zhang D.Y., Reddy K., Hidayat S.H., Srithongchai W.,
RA   Green S.K., Jan F.J.;
RT   "Molecular characterization of the CP gene and 3'UTR of Chilli veinal
RT   mottle virus from South and Southeast Asia";
RL   Plant Pathol. 57(3):408-416(2008).
XX
RN   [2]
RP   1-1251
RA   Tsai W.S., Green S.K., Huang Y.C., Zhang D., Reddy K., Hidayat S.H.,
RA   Srithongchai W.;
RT   ;
RL   Submitted (15-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   Virology unit, AVRDC-The World Vegetable Center, P.O. Box 42, Shanhua,
RL   Tainan, Taiwan 74199, R. O. C.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1251
FT                   /organism="Chilli veinal mottle virus"
FT                   /isolate="CM1"
FT                   /mol_type="genomic RNA"
FT                   /country="Thailand:Chiang Mai"
FT                   /db_xref="taxon:52280"
FT   CDS             <1. .962
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /note="contains coat protein"
FT                   /db_xref="GOA:Q0MS18"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q0MS18"
FT                   /protein_id="ABH12128.1"
FT                   /translation="HGESDISPYLRALIEGAKEEGLDDEGGEVAHQSGESIDAGRVKGE
FT                   DSSSKPADKQATEKKSKVSGQAQPQSRQSEMEVPQVRDRDVNVGTSGTFTIPRLKGISS
FT                   KLTIPKIKTKAVVNLEHLLDYAPEQIHLSNTRALQSQFASWYEGVKNDYDVTDEQMQII
FT                   LNGLMVWCIENGTSPNINGYWVMMDGDEQVEYPIKPLIDHAKPSFRQIMAHFSNLAEAY
FT                   IEKRNSEKPYMPRYGLQRNLTDMSLARYAFDFYEMTSKTPVRAREAHIQMKAAALRGAS
FT                   NRMFGLDGRVGTQEEDTERHTAEDVDRNMHNLLGVRGL"
FT   3'UTR           963. .1251
XX
SQ   Sequence 1251 BP; 387 A; 229 C; 301 G; 334 T; 0 other;

dq854953 Length: 1251  20-MAY-2008  Type: N  Check: 7571  ..

       1  agcatggaga gagcgacatt agtccatact tgagagcact tattgaaggg
      51  gccaaggagg aaggattaga tgacgagggt ggggaggttg cccatcaatc
     101  gggagagagt attgatgctg gaagagttaa gggtgaagac tcatcgagta
     151  aaccagctga caaacaagcc acagagaaga agagcaaggt aagtgggcaa
     201  gctcagccac agtctcgtca gagtgaaatg gaagtacccc aagttcgaga
     251  cagagatgtt aatgttggaa cctcggggac attcacaata ccgcgtctca
     301  agggtatctc ttcaaagcta acaataccaa agatcaaaac aaaggctgtt
     351  gttaaccttg aacaccttct tgattatgcc cctgagcaaa tacatttgag
     401  taatacaagg gcattacaat cacaatttgc atcctggtat gaaggtgtta
     451  agaatgacta tgatgtcaca gatgaacaga tgcaaataat actgaatgga
     501  ttgatggttt ggtgtattga gaatggaacg tcaccaaata tcaatggtta
     551  ttgggttatg atggatggag acgaacaagt tgaatatcca ataaagccat
     601  tgattgatca tgccaaacca tcatttagac aaatcatggc gcattttagc
     651  aatcttgctg aagcgtacat tgagaagcgc aattctgaga agccttatat
     701  gccaagatat gggcttcaac gaaaccttac cgatatgtca ttagcgcgat
     751  atgctttcga tttctatgaa atgacatcga aaactcccgt tcgagctcgt
     801  gaagcacaca ttcaaatgaa agcagctgca ttacgcggtg ctagcaacag
     851  gatgttcgga ctggacggta gggtaggcac acaggaagag gacaccgaac
     901  gacatacagc agaggatgta gatagaaata tgcacaacct gctgggtgtt
     951  cggggattat gatccgcttc aacttttaac tagtagtgga caatatattg
    1001  tagtatatgt aacttggttt atgttatcaa tcatgcatat tcttcagtgt
    1051  ggttcccacc ataagttatg tgtgcttggt ttcatactac tttatatata
    1101  tattgtttag tactctttat ctaagtagct gtgtatcccc gcccattcag
    1151  cgtggcttcc acccctttat ggagaatggt gcaacaaaga ctattgttat
    1201  gattcatgca ggtgattccg tgaatcgttg gattgttcaa tagttggcgt
    1251  t