Sequence of DPV Tobacco etch virus

Tobacco etch virus isolate CARDI CP4 coat protein gene, partial cds.

ACC No: DQ871311

Dated: 2007-09-11 | Length: 786 | CRC: 1463405345

                
ID   DQ871311; SV 1; linear; genomic RNA; STD; VRL; 786 BP.
XX
AC   DQ871311;
XX
DT   03-SEP-2006 (Rel. 89, Created)
DT   11-SEP-2007 (Rel. 93, Last updated, Version 2)
XX
DE   Tobacco etch virus isolate CARDI CP4 coat protein gene, partial cds.
XX
KW   .
XX
OS   Tobacco etch virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-786
RA   Spence A., Tolin S.A., McLaughlin W.A.;
RT   "Genetic Characterization of TEV Infecting Scotch Bonnet Pepper in
RT   Jamaica";
RL   Unpublished.
XX
RN   [2]
RP   1-786
RA   Spence A.;
RT   ;
RL   Submitted (31-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   Department of Basic Medical Sciences, Biochemistry Section, The University
RL   of the West Indies, Mona, Kingston 7, Jamaica
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .786
FT                   /organism="Tobacco etch virus"
FT                   /isolate="CARDI CP4"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12227"
FT   CDS             <1. .>786
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:Q0GDY1"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q0GDY1"
FT                   /protein_id="ABI34582.1"
FT                   /translation="GGTVDADADAGKKKDQKVDKVAEQASKDRDVNAGTSGTFSVPRIN
FT                   AMATKLQYPRMRGEVVVNLNHLLGYKPQQIDLSNARATHEQFAAWHQAVMTACGVNEEQ
FT                   MKILLNGFMVWCIENGTSPNLNGTWVMMDGEEQVSYPLKPMVENAQPTLRQIMTHFSDL
FT                   AEAYIEMRNRERPYMPRYGLQRNITDMSLSRYAFDFYELTSKTPVRAREAHMQMKAAAV
FT                   RNSELGYLVLMATCVLQRKTLNGTQHMMSTVHAHTIRVRQ"
XX
SQ   Sequence 786 BP; 248 A; 148 C; 209 G; 181 T; 0 other;

dq871311 Length: 786  11-SEP-2007  Type: N  Check: 1912  ..

       1  ggtggcactg tggatgctga tgctgacgct ggtaagaaga aagaccaaaa
      51  ggttgataaa gttgctgagc aggcttcaaa ggatagggat gttaacgctg
     101  gaacttcagg aacattctca gttccacgaa taaatgctat ggccacaaaa
     151  ctccaatatc caagaatgag gggagaggta gttgtaaact tgaatcacct
     201  tttaggatac aagccacagc agattgattt gtcaaatgct cgggccacac
     251  atgagcagtt tgccgcgtgg catcaggcag tgatgacagc ctgtggagtg
     301  aatgaagagc aaatgaaaat attgctaaat ggatttatgg tgtggtgcat
     351  agaaaatggg acttccccaa atttgaacgg aacttgggtc atgatggatg
     401  gtgaggagca agtttcatac ccgctgaaac caatggttga aaacgcgcag
     451  ccaacactga ggcaaattat gacacacttc agtgatctgg ctgaagcgta
     501  tattgaaatg aggaacaggg agcgaccata catgcctagg tatggtttac
     551  agagaaatat tacagacatg agtttgtcac gctatgcgtt cgacttctat
     601  gagctaactt caaaaacacc tgttagagcg agggaggcgc atatgcaaat
     651  gaaagctgct gcagtacgaa acagtgaact aggttatttg gtcttgatgg
     701  caacgtgtgt actgcagagg aagacactga acggcacaca gcacatgatg
     751  tcaaccgtac atgcacacac tattagggtt cgccag