Sequence of DPV Tobacco etch virus

Tobacco etch virus isolate CARDI CP9 coat protein gene, partial cds.

ACC No: DQ871316

Dated: 2007-09-11 | Length: 789 | CRC: 42045746

                
ID   DQ871316; SV 1; linear; genomic RNA; STD; VRL; 789 BP.
XX
AC   DQ871316;
XX
DT   03-SEP-2006 (Rel. 89, Created)
DT   11-SEP-2007 (Rel. 93, Last updated, Version 2)
XX
DE   Tobacco etch virus isolate CARDI CP9 coat protein gene, partial cds.
XX
KW   .
XX
OS   Tobacco etch virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-789
RA   Spence A., Tolin S.A., McLaughlin W.A.;
RT   "Genetic Characterization of TEV Infecting Scotch Bonnet Pepper in
RT   Jamaica";
RL   Unpublished.
XX
RN   [2]
RP   1-789
RA   Spence A.;
RT   ;
RL   Submitted (31-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   Department of Basic Medical Sciences, Biochemistry Section, The University
RL   of the West Indies, Mona, Kingston 7, Jamaica
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .789
FT                   /organism="Tobacco etch virus"
FT                   /isolate="CARDI CP9"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12227"
FT   CDS             <1. .>789
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:Q0GDX6"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q0GDX6"
FT                   /protein_id="ABI34587.1"
FT                   /translation="SGTVDAGADAGKKKDQKDDRVAEQASKDRDVNAGTSGTFSVPRIN
FT                   AMATKLQYPRMKGEVVVNLNHLLGYKPQQIDLSNARATHEQFAAWHQAVMTAYGVNEEQ
FT                   MKILLNGFMVWCIENGTSPNLNGTWVMMDGEEQVSYPLKPMVENAQPTLRQIMTHFSDL
FT                   AEAYIEMRNTERPFMPRYGLQRNITDMSLSRYAFDFYELTSKTPVRAREAHMQMKAAAV
FT                   RNSGTRLFGLDGNVGTAEEDTERHTAHDVNRNMHTLLGVRQ"
XX
SQ   Sequence 789 BP; 248 A; 152 C; 215 G; 174 T; 0 other;

dq871316 Length: 789  11-SEP-2007  Type: N  Check: 7661  ..

       1  agtggcacag tggatgctgg tgctgacgct ggcaagaaga aagatcaaaa
      51  ggatgataga gtcgctgagc aggcttcaaa ggatagggat gtaaatgctg
     101  gaacttcagg aacattctca gtcccacgaa taaatgctat ggccacaaag
     151  cttcaatatc caaggatgaa aggggaagtg gttgtgaact tgaatcacct
     201  tttgggatac aagccacagc aaattgattt gtcaaatgct cgagccacac
     251  atgagcagtt tgctgcgtgg catcaggcag tgatgacagc ctatggagta
     301  aatgaagagc aaatgaaaat attgctaaat ggatttatgg tgtggtgcat
     351  agaaaatggg acttccccaa acttgaatgg aacttgggtc atgatggatg
     401  gtgaggagca agtttcgtac ccgctgaaac caatggttga gaacgcgcag
     451  ccaacactga ggcagattat gacacacttc agtgacctgg ctgaagcgta
     501  cattgaaatg aggaacacgg aacgaccatt tatgcctagg tatggtctac
     551  agagaaacat tacagacatg agtttgtcac gctatgcgtt cgacttctat
     601  gaactaactt cgaaaacacc tgttagagcg agggaggcgc atatgcaaat
     651  gaaagctgct gcagtacgaa acagtggaac taggttattt ggtcttgatg
     701  gcaacgtggg tactgcagag gaagacaccg aacggcacac agcgcatgat
     751  gtgaaccgta acatgcacac actattaggg gtccgccag