Sequence of DPV Tobacco etch virus

Tobacco etch virus isolate CARDI HC9 helper component protein gene, partial cds.

ACC No: DQ871338

Dated: 2007-09-11 | Length: 1377 | CRC: -511106273

                
ID   DQ871338; SV 1; linear; genomic RNA; STD; VRL; 1377 BP.
XX
AC   DQ871338;
XX
DT   28-AUG-2006 (Rel. 88, Created)
DT   11-SEP-2007 (Rel. 93, Last updated, Version 2)
XX
DE   Tobacco etch virus isolate CARDI HC9 helper component protein gene, partial
DE   cds.
XX
KW   .
XX
OS   Tobacco etch virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1377
RA   Spence A.;
RT   "Genetic Characterization of TEV Infecting Scotch Bonnet Pepper in
RT   Jamaica";
RL   Unpublished.
XX
RN   [2]
RP   1-1377
RA   Spence A.;
RT   ;
RL   Submitted (31-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   Department of Basic Medical Sciences, Biochemistry Section, The University
RL   of the West Indies, Mona, Kingston 7, Jamaica
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1377
FT                   /organism="Tobacco etch virus"
FT                   /isolate="CARDI HC9"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12227"
FT   CDS             <1. .>1377
FT                   /codon_start=1
FT                   /product="helper component protein"
FT                   /note="HC"
FT                   /db_xref="GOA:Q0GDV4"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="UniProtKB/TrEMBL:Q0GDV4"
FT                   /protein_id="ABI30954.1"
FT                   /translation="SDKSISEAFFIPYSTKFLELRPDGISHECTRGVSVERCGEVAAIL
FT                   TQALSPCGKITCKRCVVETPDIVGSESGESVTNQGKLLTMLREQYPDFPMAEKLLTRFL
FT                   QQKSLVNTNLTACVSVKQLIGDRKQAPFTHVLAVSEILFKGNRLTGTDLEEASTHMLEI
FT                   ARFLNNRTENMRIGHLGSFRNKISSKAHVNNALMCDNQLDQNGNFIWGLRGAHAKRFLK
FT                   GFFTEIDPNEGYDKYVIRKHIRGSRKLAIGNLIMSTDFQTLRQQIQGETIERKEIGNYC
FT                   ISMRNGNYVYPCCCVTLEDGKAQYSDLKXPTKRHLVIGNSGDSKYLDFPVLNEEKMYIA
FT                   NEGYCYMNIFFALLVNVKEEDAKDFTKFIRDTIVPKLGAWPTMQDVATACYLLSILYPD
FT                   VLSAELPRILVDHDNKTMHVLDSYGSKTTGYHMLKMNTTSQLIEFVHSGLESEMKTYNV
FT                   G"
XX
SQ   Sequence 1377 BP; 442 A; 271 C; 308 G; 355 T; 1 other;

dq871338 Length: 1377  11-SEP-2007  Type: N  Check: 6368  ..

       1  agcgacaagt caatctctga ggcatttttt ataccatact ctacgaaatt
      51  cttggagttg agaccagatg gaatctccca tgagtgtaca agaggtgtat
     101  cagttgagcg gtgcggtgag gtggctgcaa tcctgacaca agcactttca
     151  ccgtgtggta agatcacatg taaacgttgc gtggttgaaa cacctgacat
     201  tgttggaagt gagtcgggag aaagcgtcac taaccaaggc aagctcctta
     251  caatgttgag agaacagtat ccagatttcc caatggccga gaaactactc
     301  acaaggtttt tgcaacagaa atcactagta aacacaaatt tgacggcctg
     351  cgtgagcgtc aaacagctca ttggagaccg taaacaagct ccattcacac
     401  atgtactggc tgttagcgaa attctgttca aaggcaatag actgacagga
     451  actgatctcg aagaggcaag cacgcacatg cttgaaatag caaggttctt
     501  aaacaatcgc actgagaata tgcgcattgg ccacctcggt tccttcagaa
     551  acaaaatatc atcaaaggcc catgtgaata acgcactcat gtgtgataat
     601  caactcgatc agaatgggaa ttttatttgg gggctaaggg gtgcacacgc
     651  aaagaggttt ctcaaaggat tttttactga gattgaccca aatgaaggat
     701  acgataagta tgttatcagg aaacatatca ggggtagcag aaagctagca
     751  attggcaatc tgataatgtc aactgacttc caaacgctca ggcaacagat
     801  tcaaggcgaa actattgagc gtaaagaaat tgggaattac tgcatttcaa
     851  tgcgaaacgg taattacgta tacccatgtt gttgtgttac ccttgaagat
     901  ggtaaggctc aatactcaga tttaaagcnc ccaacaaaga gacatctggt
     951  cattggcaac tctggcgatt caaagtacct ggactttcca gttcttaatg
    1001  aagagaaaat gtatatagct aacgaaggtt attgctacat gaacattttc
    1051  tttgctctac tagtgaatgt caaagaagag gatgcaaagg acttcaccaa
    1101  gtttataagg gacacaattg ttccaaagct tggagcgtgg ccaacgatgc
    1151  aggatgttgc aactgcatgc tacttacttt ctattcttta cccagatgtc
    1201  ctgagtgctg agttacccag aattttggtt gatcatgaca acaaaacaat
    1251  gcatgttttg gattcgtatg ggtctaaaac gacagggtac cacatgttga
    1301  agatgaacac aacatcccaa ctaattgaat tcgttcattc aggattggaa
    1351  tccgaaatga aaacttataa tgttgga